data_5U3C
#
_model_server_result.job_id            SZ3a9fGrRX4qNiig9DBngQ 
_model_server_result.datetime_utc      '2024-11-15 05:51:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5u3c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":601}' 
#
_entry.id    5U3C 
#
_exptl.entry_id    5U3C 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              483.156 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "CYTIDINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? 28-meric 28 'representative helical assembly' 1 
? tetrameric 4 'helical asymmetric unit' 2 
? tetrameric 4 'helical asymmetric unit, std helical frame' 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L 1 (1-7) 
A,B,C,D,E,F,G,H,I,J,K,L 2 4 
A,B,C,D,E,F,G,H,I,J,K,L 3 H 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
H 'transform to helical frame' ? ? 1 0 0 0 1 0 0 0 1 0 0 0 
1 'helical symmetry operation' ? ? -0.82599 0.563685 0 -0.563685 -0.82599 0 0 0 1 0 0 -244.773 
2 'helical symmetry operation' ? ? -0.124052 0.992276 0 -0.992276 -0.124052 0 0 0 1 0 0 -163.182 
3 'helical symmetry operation' ? ? 0.661796 0.749684 0 -0.749684 0.661796 0 0 0 1 0 0 -81.591 
4 'helical symmetry operation' ? ? 1 0 0 0 1 0 0 0 1 0 0 0 
5 'helical symmetry operation' ? ? 0.661796 -0.749684 0 0.749684 0.661796 0 0 0 1 0 0 81.591 
6 'helical symmetry operation' ? ? -0.124052 -0.992276 0 0.992276 -0.124052 0 0 0 1 0 0 163.182 
7 'helical symmetry operation' ? ? -0.82599 -0.563685 0 0.563685 -0.82599 0 0 0 1 0 0 244.773 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 261 A CYS 261 1_555 A SG CYS 268 A CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
disulf ? disulf2 B SG CYS 261 B CYS 261 1_555 B SG CYS 268 B CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf3 C SG CYS 261 C CYS 261 1_555 C SG CYS 268 C CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf4 D SG CYS 261 D CYS 261 1_555 D SG CYS 268 D CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
#
_chem_comp.formula           'C9 H16 N3 O14 P3' 
_chem_comp.formula_weight    483.156 
_chem_comp.id                CTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "CYTIDINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5U3C 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 CTP A 1 601 602 CTP CTP . 
F 3 ADP A 1 602 601 ADP ADP . 
G 2 CTP B 1 601 602 CTP CTP . 
H 3 ADP B 1 602 601 ADP ADP . 
I 2 CTP C 1 601 602 CTP CTP . 
J 3 ADP C 1 602 601 ADP ADP . 
K 2 CTP D 1 601 602 CTP CTP . 
L 3 ADP D 1 602 601 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 CTP . . . K 2 0.503 13.425 -11.357 1 38.6 ? N1 CTP 601 D 1 
HETATM 2 C C2 CTP . . . K 2 -0.176 13.345 -10.096 1 41.36 ? C2 CTP 601 D 1 
HETATM 3 N N3 CTP . . . K 2 0.235 12.403 -9.2 1 40.2 ? N3 CTP 601 D 1 
HETATM 4 C C4 CTP . . . K 2 1.437 11.741 -9.432 1 38.26 ? C4 CTP 601 D 1 
HETATM 5 C C5 CTP . . . K 2 2.252 12.119 -10.51 1 35.37 ? C5 CTP 601 D 1 
HETATM 6 C C6 CTP . . . K 2 1.786 12.966 -11.486 1 36.32 ? C6 CTP 601 D 1 
HETATM 7 O O2 CTP . . . K 2 -1.22 13.951 -9.894 1 42.93 ? O2 CTP 601 D 1 
HETATM 8 N N4 CTP . . . K 2 1.659 10.58 -8.813 1 43.37 ? N4 CTP 601 D 1 
HETATM 9 C C1' CTP . . . K 2 -0.249 13.811 -12.558 1 38.7 ? C1' CTP 601 D 1 
HETATM 10 C C2' CTP . . . K 2 -0.12 15.222 -13.008 1 41.49 ? C2' CTP 601 D 1 
HETATM 11 O O2' CTP . . . K 2 -1.195 15.998 -12.472 1 42.81 ? O2' CTP 601 D 1 
HETATM 12 C C3' CTP . . . K 2 -0.259 15.115 -14.537 1 43.09 ? C3' CTP 601 D 1 
HETATM 13 C C4' CTP . . . K 2 -0.101 13.631 -14.831 1 36.38 ? C4' CTP 601 D 1 
HETATM 14 O O4' CTP . . . K 2 0.441 13.089 -13.62 1 38.44 ? O4' CTP 601 D 1 
HETATM 15 O O3' CTP . . . K 2 -1.563 15.53 -14.923 1 48.47 ? O3' CTP 601 D 1 
HETATM 16 C C5' CTP . . . K 2 0.853 13.4 -16.019 1 42.49 ? C5' CTP 601 D 1 
HETATM 17 O O5' CTP . . . K 2 0.233 12.537 -16.93 1 43.36 ? O5' CTP 601 D 1 
HETATM 18 P PA CTP . . . K 2 -0.903 13.068 -17.927 1 40.11 ? PA CTP 601 D 1 
HETATM 19 O O1A CTP . . . K 2 -1.507 11.922 -18.634 1 41.92 ? O1A CTP 601 D 1 
HETATM 20 O O2A CTP . . . K 2 -1.805 14.057 -17.282 1 29.56 ? O2A CTP 601 D 1 
HETATM 21 O O3A CTP . . . K 2 -0.027 13.965 -18.94 1 44.15 ? O3A CTP 601 D 1 
HETATM 22 P PB CTP . . . K 2 1.588 14.305 -18.833 1 37.55 ? PB CTP 601 D 1 
HETATM 23 O O1B CTP . . . K 2 2.088 14.952 -20.055 1 38.41 ? O1B CTP 601 D 1 
HETATM 24 O O2B CTP . . . K 2 1.944 14.935 -17.539 1 44.65 ? O2B CTP 601 D 1 
HETATM 25 O O3B CTP . . . K 2 2.179 12.802 -18.759 1 39.65 ? O3B CTP 601 D 1 
HETATM 26 P PG CTP . . . K 2 1.36 11.424 -19.221 1 43.25 ? PG CTP 601 D 1 
HETATM 27 O O1G CTP . . . K 2 0.374 11.62 -20.308 1 52.65 ? O1G CTP 601 D 1 
HETATM 28 O O2G CTP . . . K 2 0.719 10.829 -17.874 1 42.39 ? O2G CTP 601 D 1 
HETATM 29 O O3G CTP . . . K 2 2.511 10.389 -19.655 1 48.69 ? O3G CTP 601 D 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    53 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           29 
#