data_5U3I # _model_server_result.job_id DBMoV2GArb_oJoFixTxn3Q _model_server_result.datetime_utc '2025-03-05 22:13:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u3i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":203}' # _entry.id 5U3I # _exptl.entry_id 5U3I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 352.387 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methoxy-5-({2-[1-(propan-2-yl)-1H-pyrazol-5-yl]pyridin-3-yl}methoxy)pyridine-4-carbaldehyde _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5U3I _cell.length_a 57.385 _cell.length_b 59.04 _cell.length_c 172.637 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U3I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 E FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc2 E FE HEM . A HEM 201 1_555 F O CMO . A CMO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 H FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc4 C NE2 HIS 87 C HIS 87 1_555 J FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc5 J FE HEM . C HEM 201 1_555 K O CMO . C CMO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc6 D NE2 HIS 92 D HIS 92 1_555 L FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc7 L FE HEM . D HEM 201 1_555 M O CMO . D CMO 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? # _chem_comp.formula 'C19 H20 N4 O3' _chem_comp.formula_weight 352.387 _chem_comp.id 7SJ _chem_comp.mon_nstd_flag . _chem_comp.name 2-methoxy-5-({2-[1-(propan-2-yl)-1H-pyrazol-5-yl]pyridin-3-yl}methoxy)pyridine-4-carbaldehyde _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C22 7SJ sing 1 n n N20 N21 7SJ sing 2 n y N20 C19 7SJ doub 3 n y C22 N21 7SJ sing 4 n n C22 C23 7SJ sing 5 n n N21 C17 7SJ sing 6 n y C19 C18 7SJ sing 7 n y C17 C18 7SJ doub 8 n y C17 C16 7SJ sing 9 n n N15 C16 7SJ doub 10 n y N15 C14 7SJ sing 11 n y C16 C11 7SJ sing 12 n y C04 C05 7SJ doub 13 n y C04 C03 7SJ sing 14 n y C06 C05 7SJ sing 15 n n O02 C03 7SJ sing 16 n n O02 C01 7SJ sing 17 n n C05 C08 7SJ sing 18 n y C03 N26 7SJ doub 19 n y C14 C13 7SJ doub 20 n y C08 O09 7SJ sing 21 n n C08 C25 7SJ doub 22 n y N26 C25 7SJ sing 23 n y O09 C10 7SJ sing 24 n n C11 C10 7SJ sing 25 n n C11 C12 7SJ doub 26 n y C13 C12 7SJ sing 27 n y C01 H012 7SJ sing 28 n n C01 H013 7SJ sing 29 n n C01 H011 7SJ sing 30 n n C04 H041 7SJ sing 31 n n C06 H1 7SJ sing 32 n n C10 H101 7SJ sing 33 n n C10 H102 7SJ sing 34 n n C12 H121 7SJ sing 35 n n C13 H131 7SJ sing 36 n n C14 H141 7SJ sing 37 n n C18 H181 7SJ sing 38 n n C19 H191 7SJ sing 39 n n C22 H221 7SJ sing 40 n n C23 H231 7SJ sing 41 n n C23 H232 7SJ sing 42 n n C23 H233 7SJ sing 43 n n C24 H241 7SJ sing 44 n n C24 H242 7SJ sing 45 n n C24 H243 7SJ sing 46 n n C25 H251 7SJ sing 47 n n C06 O1 7SJ doub 48 n n # _atom_sites.entry_id 5U3I _atom_sites.fract_transf_matrix[1][1] 0.017426 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016938 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HEM A 1 201 142 HEM HEM . F 4 CMO A 1 202 143 CMO CMO . G 5 7SJ A 1 203 1 7SJ GBT . H 3 HEM B 1 201 147 HEM HEM . I 4 CMO B 1 202 148 CMO CMO . J 3 HEM C 1 201 142 HEM HEM . K 4 CMO C 1 202 143 CMO CMO . L 3 HEM D 1 201 147 HEM HEM . M 4 CMO D 1 202 148 CMO CMO . N 6 HOH A 1 301 17 HOH HOH . N 6 HOH A 2 302 3 HOH HOH . N 6 HOH A 3 303 16 HOH HOH . N 6 HOH A 4 304 34 HOH HOH . N 6 HOH A 5 305 14 HOH HOH . N 6 HOH A 6 306 10 HOH HOH . N 6 HOH A 7 307 37 HOH HOH . N 6 HOH A 8 308 46 HOH HOH . N 6 HOH A 9 309 18 HOH HOH . N 6 HOH A 10 310 35 HOH HOH . N 6 HOH A 11 311 15 HOH HOH . N 6 HOH A 12 312 49 HOH HOH . O 6 HOH B 1 301 52 HOH HOH . O 6 HOH B 2 302 13 HOH HOH . O 6 HOH B 3 303 36 HOH HOH . O 6 HOH B 4 304 11 HOH HOH . O 6 HOH B 5 305 50 HOH HOH . O 6 HOH B 6 306 51 HOH HOH . O 6 HOH B 7 307 12 HOH HOH . O 6 HOH B 8 308 38 HOH HOH . P 6 HOH C 1 301 32 HOH HOH . P 6 HOH C 2 302 41 HOH HOH . P 6 HOH C 3 303 31 HOH HOH . P 6 HOH C 4 304 25 HOH HOH . P 6 HOH C 5 305 42 HOH HOH . P 6 HOH C 6 306 29 HOH HOH . P 6 HOH C 7 307 28 HOH HOH . P 6 HOH C 8 308 5 HOH HOH . P 6 HOH C 9 309 30 HOH HOH . P 6 HOH C 10 310 23 HOH HOH . P 6 HOH C 11 311 20 HOH HOH . P 6 HOH C 12 312 24 HOH HOH . P 6 HOH C 13 313 21 HOH HOH . P 6 HOH C 14 314 9 HOH HOH . P 6 HOH C 15 315 1 HOH HOH . P 6 HOH C 16 316 54 HOH HOH . P 6 HOH C 17 317 6 HOH HOH . P 6 HOH C 18 318 48 HOH HOH . P 6 HOH C 19 319 53 HOH HOH . P 6 HOH C 20 320 4 HOH HOH . P 6 HOH C 21 321 2 HOH HOH . P 6 HOH C 22 322 47 HOH HOH . Q 6 HOH D 1 301 22 HOH HOH . Q 6 HOH D 2 302 55 HOH HOH . Q 6 HOH D 3 303 33 HOH HOH . Q 6 HOH D 4 304 7 HOH HOH . Q 6 HOH D 5 305 8 HOH HOH . Q 6 HOH D 6 306 19 HOH HOH . Q 6 HOH D 7 307 39 HOH HOH . Q 6 HOH D 8 308 40 HOH HOH . Q 6 HOH D 9 309 26 HOH HOH . Q 6 HOH D 10 310 45 HOH HOH . Q 6 HOH D 11 311 27 HOH HOH . Q 6 HOH D 12 312 44 HOH HOH . Q 6 HOH D 13 313 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 7SJ . . . G 5 25.54 -4.634 -20.214 1 75.62 ? C01 7SJ 203 A 1 HETATM 2 C C04 7SJ . . . G 5 28.789 -6.273 -20.77 1 76.81 ? C04 7SJ 203 A 1 HETATM 3 C C06 7SJ . . . G 5 30.759 -7.825 -21.024 1 78.5 2 C06 7SJ 203 A 1 HETATM 4 C C10 7SJ . . . G 5 28.016 -10.858 -19.973 1 87.02 ? C10 7SJ 203 A 1 HETATM 5 C C11 7SJ . . . G 5 28.84 -12.1 -20.057 1 88.32 ? C11 7SJ 203 A 1 HETATM 6 C C12 7SJ . . . G 5 29.87 -12.265 -19.139 1 96.31 ? C12 7SJ 203 A 1 HETATM 7 C C13 7SJ . . . G 5 30.662 -13.39 -19.18 1 101.74 ? C13 7SJ 203 A 1 HETATM 8 C C14 7SJ . . . G 5 30.416 -14.319 -20.152 1 102.74 ? C14 7SJ 203 A 1 HETATM 9 C C17 7SJ . . . G 5 27.693 -13.079 -22.03 1 90.24 ? C17 7SJ 203 A 1 HETATM 10 C C18 7SJ . . . G 5 26.352 -13.326 -21.985 1 88.49 ? C18 7SJ 203 A 1 HETATM 11 C C19 7SJ . . . G 5 25.899 -13.167 -23.287 1 74.56 ? C19 7SJ 203 A 1 HETATM 12 N N21 7SJ . . . G 5 27.965 -12.796 -23.328 1 85.08 ? N21 7SJ 203 A 1 HETATM 13 C C22 7SJ . . . G 5 29.219 -12.479 -23.976 1 89.28 ? C22 7SJ 203 A 1 HETATM 14 C C23 7SJ . . . G 5 30.299 -11.962 -23.036 1 91.66 ? C23 7SJ 203 A 1 HETATM 15 C C24 7SJ . . . G 5 28.983 -11.499 -25.107 1 88.38 ? C24 7SJ 203 A 1 HETATM 16 O O02 7SJ . . . G 5 26.912 -4.807 -20.538 1 78.91 ? O02 7SJ 203 A 1 HETATM 17 C C03 7SJ . . . G 5 27.434 -6.088 -20.446 1 74.37 ? C03 7SJ 203 A 1 HETATM 18 C C05 7SJ . . . G 5 29.317 -7.558 -20.687 1 80.63 ? C05 7SJ 203 A 1 HETATM 19 C C08 7SJ . . . G 5 28.473 -8.573 -20.28 1 80.38 ? C08 7SJ 203 A 1 HETATM 20 O O09 7SJ . . . G 5 28.975 -9.825 -20.192 1 86.36 ? O09 7SJ 203 A 1 HETATM 21 N N15 7SJ . . . G 5 29.44 -14.205 -21.052 1 97.65 ? N15 7SJ 203 A 1 HETATM 22 C C16 7SJ . . . G 5 28.679 -13.104 -20.988 1 90.21 ? C16 7SJ 203 A 1 HETATM 23 N N20 7SJ . . . G 5 26.882 -12.853 -24.093 1 80.09 ? N20 7SJ 203 A 1 HETATM 24 C C25 7SJ . . . G 5 27.145 -8.305 -19.988 1 70.91 ? C25 7SJ 203 A 1 HETATM 25 N N26 7SJ . . . G 5 26.622 -7.087 -20.066 1 67.62 ? N26 7SJ 203 A 1 HETATM 26 H H012 7SJ . . . G 5 25.302 -3.572 -20.322 1 90.75 ? H012 7SJ 203 A 1 HETATM 27 H H013 7SJ . . . G 5 25.341 -4.919 -19.176 1 90.75 ? H013 7SJ 203 A 1 HETATM 28 H H011 7SJ . . . G 5 24.9 -5.194 -20.904 1 90.75 ? H011 7SJ 203 A 1 HETATM 29 H H041 7SJ . . . G 5 29.49 -5.446 -20.917 1 92.17 ? H041 7SJ 203 A 1 HETATM 30 H H1 7SJ . . . G 5 31.267 -8.277 -20.167 1 94.2 ? H1 7SJ 203 A 1 HETATM 31 H H101 7SJ . . . G 5 27.178 -10.889 -20.698 1 104.43 ? H101 7SJ 203 A 1 HETATM 32 H H102 7SJ . . . G 5 27.579 -10.763 -18.972 1 104.43 ? H102 7SJ 203 A 1 HETATM 33 H H121 7SJ . . . G 5 29.982 -11.598 -18.285 1 115.58 ? H121 7SJ 203 A 1 HETATM 34 H H131 7SJ . . . G 5 31.446 -13.544 -18.448 1 122.09 ? H131 7SJ 203 A 1 HETATM 35 H H141 7SJ . . . G 5 31.061 -15.183 -20.276 1 123.29 ? H141 7SJ 203 A 1 HETATM 36 H H181 7SJ . . . G 5 25.78 -13.622 -21.117 1 106.19 ? H181 7SJ 203 A 1 HETATM 37 H H191 7SJ . . . G 5 24.883 -13.061 -23.636 1 89.47 ? H191 7SJ 203 A 1 HETATM 38 H H221 7SJ . . . G 5 29.589 -13.405 -24.429 1 107.13 ? H221 7SJ 203 A 1 HETATM 39 H H231 7SJ . . . G 5 29.924 -11.148 -22.404 1 110 ? H231 7SJ 203 A 1 HETATM 40 H H232 7SJ . . . G 5 31.187 -11.593 -23.566 1 110 ? H232 7SJ 203 A 1 HETATM 41 H H233 7SJ . . . G 5 30.652 -12.756 -22.373 1 110 ? H233 7SJ 203 A 1 HETATM 42 H H241 7SJ . . . G 5 28.542 -10.563 -24.748 1 106.06 ? H241 7SJ 203 A 1 HETATM 43 H H242 7SJ . . . G 5 28.306 -11.92 -25.858 1 106.06 ? H242 7SJ 203 A 1 HETATM 44 H H243 7SJ . . . G 5 29.924 -11.252 -25.612 1 106.06 ? H243 7SJ 203 A 1 HETATM 45 H H251 7SJ . . . G 5 26.379 -9.069 -20.056 1 85.09 ? H251 7SJ 203 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 45 #