data_5U3U # _model_server_result.job_id KFv-z0z0hbvayFMYQy5iyA _model_server_result.datetime_utc '2025-04-06 04:18:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u3u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5U3U # _exptl.entry_id 5U3U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 475.576 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-[2-({cyclopentyl[4-(furan-2-yl)benzene-1-carbonyl]amino}methyl)phenoxy]hexanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.91 _cell.angle_gamma 90 _cell.entry_id 5U3U _cell.length_a 39.6 _cell.length_b 94.55 _cell.length_c 96.57 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U3U _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,H 1 1 B,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H33 N O5' _chem_comp.formula_weight 475.576 _chem_comp.id 7TV _chem_comp.mon_nstd_flag . _chem_comp.name '6-[2-({cyclopentyl[4-(furan-2-yl)benzene-1-carbonyl]amino}methyl)phenoxy]hexanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C12 7TV doub 1 n n O2 C12 7TV sing 2 n n C27 C26 7TV sing 3 n n C27 C28 7TV sing 4 n n C12 C11 7TV sing 5 n n C26 C25 7TV sing 6 n n C28 C13 7TV sing 7 n n C11 C10 7TV sing 8 n n C2 C1 7TV doub 9 n y C2 C3 7TV sing 10 n y C1 C 7TV sing 11 n y C8 C9 7TV sing 12 n n C8 C7 7TV sing 13 n n C3 C4 7TV doub 14 n y C9 C10 7TV sing 15 n n C7 O 7TV sing 16 n n C13 C25 7TV sing 17 n n C13 N 7TV sing 18 n n C O 7TV sing 19 n n C C5 7TV doub 20 n y C4 C5 7TV sing 21 n y C5 C6 7TV sing 22 n n N C6 7TV sing 23 n n N C14 7TV sing 24 n n O3 C14 7TV doub 25 n n C14 C15 7TV sing 26 n n C15 C17 7TV doub 27 n y C15 C16 7TV sing 28 n y C17 C18 7TV sing 29 n y C16 C20 7TV doub 30 n y C18 C19 7TV doub 31 n y C20 C19 7TV sing 32 n y C19 C21 7TV sing 33 n n C21 O4 7TV sing 34 n y C21 C22 7TV doub 35 n y O4 C24 7TV sing 36 n y C22 C23 7TV sing 37 n y C24 C23 7TV doub 38 n y C4 H3 7TV sing 39 n n C6 H4 7TV sing 40 n n C6 H5 7TV sing 41 n n C7 H6 7TV sing 42 n n C7 H7 7TV sing 43 n n C8 H8 7TV sing 44 n n C8 H9 7TV sing 45 n n C10 H13 7TV sing 46 n n C10 H12 7TV sing 47 n n C13 H16 7TV sing 48 n n C17 H18 7TV sing 49 n n C20 H20 7TV sing 50 n n C22 H21 7TV sing 51 n n C24 H23 7TV sing 52 n n C26 H26 7TV sing 53 n n C26 H27 7TV sing 54 n n C28 H31 7TV sing 55 n n C28 H30 7TV sing 56 n n C1 H 7TV sing 57 n n C2 H1 7TV sing 58 n n O2 H32 7TV sing 59 n n C3 H2 7TV sing 60 n n C9 H11 7TV sing 61 n n C9 H10 7TV sing 62 n n C11 H14 7TV sing 63 n n C11 H15 7TV sing 64 n n C16 H17 7TV sing 65 n n C18 H19 7TV sing 66 n n C23 H22 7TV sing 67 n n C25 H24 7TV sing 68 n n C25 H25 7TV sing 69 n n C27 H28 7TV sing 70 n n C27 H29 7TV sing 71 n n # _atom_sites.entry_id 5U3U _atom_sites.fract_transf_matrix[1][1] 0.025253 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003509 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010455 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 7TV A 1 501 465 7TV LIG . D 3 PGO A 1 502 466 PGO PGO . E 4 PEG A 1 503 467 PEG PEG . F 5 B7G A 1 504 464 B7G B7G . G 5 B7G B 1 501 464 B7G B7G . H 6 HOH A 1 601 120 HOH HOH . H 6 HOH A 2 602 73 HOH HOH . H 6 HOH A 3 603 222 HOH HOH . H 6 HOH A 4 604 112 HOH HOH . H 6 HOH A 5 605 218 HOH HOH . H 6 HOH A 6 606 2 HOH HOH . H 6 HOH A 7 607 212 HOH HOH . H 6 HOH A 8 608 123 HOH HOH . H 6 HOH A 9 609 216 HOH HOH . H 6 HOH A 10 610 34 HOH HOH . H 6 HOH A 11 611 91 HOH HOH . H 6 HOH A 12 612 94 HOH HOH . H 6 HOH A 13 613 59 HOH HOH . H 6 HOH A 14 614 7 HOH HOH . H 6 HOH A 15 615 12 HOH HOH . H 6 HOH A 16 616 39 HOH HOH . H 6 HOH A 17 617 23 HOH HOH . H 6 HOH A 18 618 46 HOH HOH . H 6 HOH A 19 619 101 HOH HOH . H 6 HOH A 20 620 103 HOH HOH . H 6 HOH A 21 621 35 HOH HOH . H 6 HOH A 22 622 183 HOH HOH . H 6 HOH A 23 623 149 HOH HOH . H 6 HOH A 24 624 150 HOH HOH . H 6 HOH A 25 625 169 HOH HOH . H 6 HOH A 26 626 45 HOH HOH . H 6 HOH A 27 627 214 HOH HOH . H 6 HOH A 28 628 104 HOH HOH . H 6 HOH A 29 629 80 HOH HOH . H 6 HOH A 30 630 115 HOH HOH . H 6 HOH A 31 631 36 HOH HOH . H 6 HOH A 32 632 109 HOH HOH . H 6 HOH A 33 633 95 HOH HOH . H 6 HOH A 34 634 10 HOH HOH . H 6 HOH A 35 635 160 HOH HOH . H 6 HOH A 36 636 141 HOH HOH . H 6 HOH A 37 637 219 HOH HOH . H 6 HOH A 38 638 22 HOH HOH . H 6 HOH A 39 639 4 HOH HOH . H 6 HOH A 40 640 111 HOH HOH . H 6 HOH A 41 641 27 HOH HOH . H 6 HOH A 42 642 54 HOH HOH . H 6 HOH A 43 643 86 HOH HOH . H 6 HOH A 44 644 44 HOH HOH . H 6 HOH A 45 645 201 HOH HOH . H 6 HOH A 46 646 217 HOH HOH . H 6 HOH A 47 647 178 HOH HOH . H 6 HOH A 48 648 77 HOH HOH . H 6 HOH A 49 649 26 HOH HOH . H 6 HOH A 50 650 124 HOH HOH . H 6 HOH A 51 651 155 HOH HOH . H 6 HOH A 52 652 193 HOH HOH . H 6 HOH A 53 653 14 HOH HOH . H 6 HOH A 54 654 96 HOH HOH . H 6 HOH A 55 655 130 HOH HOH . H 6 HOH A 56 656 188 HOH HOH . H 6 HOH A 57 657 17 HOH HOH . H 6 HOH A 58 658 5 HOH HOH . H 6 HOH A 59 659 32 HOH HOH . H 6 HOH A 60 660 154 HOH HOH . H 6 HOH A 61 661 58 HOH HOH . H 6 HOH A 62 662 1 HOH HOH . H 6 HOH A 63 663 175 HOH HOH . H 6 HOH A 64 664 215 HOH HOH . H 6 HOH A 65 665 110 HOH HOH . H 6 HOH A 66 666 93 HOH HOH . H 6 HOH A 67 667 133 HOH HOH . H 6 HOH A 68 668 102 HOH HOH . H 6 HOH A 69 669 50 HOH HOH . H 6 HOH A 70 670 65 HOH HOH . H 6 HOH A 71 671 126 HOH HOH . H 6 HOH A 72 672 136 HOH HOH . H 6 HOH A 73 673 173 HOH HOH . H 6 HOH A 74 674 128 HOH HOH . H 6 HOH A 75 675 47 HOH HOH . I 6 HOH B 1 601 195 HOH HOH . I 6 HOH B 2 602 221 HOH HOH . I 6 HOH B 3 603 116 HOH HOH . I 6 HOH B 4 604 68 HOH HOH . I 6 HOH B 5 605 142 HOH HOH . I 6 HOH B 6 606 84 HOH HOH . I 6 HOH B 7 607 60 HOH HOH . I 6 HOH B 8 608 52 HOH HOH . I 6 HOH B 9 609 6 HOH HOH . I 6 HOH B 10 610 192 HOH HOH . I 6 HOH B 11 611 205 HOH HOH . I 6 HOH B 12 612 48 HOH HOH . I 6 HOH B 13 613 145 HOH HOH . I 6 HOH B 14 614 9 HOH HOH . I 6 HOH B 15 615 137 HOH HOH . I 6 HOH B 16 616 56 HOH HOH . I 6 HOH B 17 617 13 HOH HOH . I 6 HOH B 18 618 170 HOH HOH . I 6 HOH B 19 619 209 HOH HOH . I 6 HOH B 20 620 100 HOH HOH . I 6 HOH B 21 621 174 HOH HOH . I 6 HOH B 22 622 90 HOH HOH . I 6 HOH B 23 623 151 HOH HOH . I 6 HOH B 24 624 40 HOH HOH . I 6 HOH B 25 625 87 HOH HOH . I 6 HOH B 26 626 72 HOH HOH . I 6 HOH B 27 627 83 HOH HOH . I 6 HOH B 28 628 211 HOH HOH . I 6 HOH B 29 629 82 HOH HOH . I 6 HOH B 30 630 98 HOH HOH . I 6 HOH B 31 631 28 HOH HOH . I 6 HOH B 32 632 89 HOH HOH . I 6 HOH B 33 633 99 HOH HOH . I 6 HOH B 34 634 198 HOH HOH . I 6 HOH B 35 635 213 HOH HOH . I 6 HOH B 36 636 191 HOH HOH . I 6 HOH B 37 637 220 HOH HOH . I 6 HOH B 38 638 132 HOH HOH . I 6 HOH B 39 639 171 HOH HOH . I 6 HOH B 40 640 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 7TV . . . C 2 -19.08 -2.866 132.23 1 34.89 ? C4 7TV 501 A 1 HETATM 2 C C5 7TV . . . C 2 -19.782 -1.695 132.479 1 37.07 ? C5 7TV 501 A 1 HETATM 3 C C6 7TV . . . C 2 -19.138 -0.535 133.208 1 38.31 ? C6 7TV 501 A 1 HETATM 4 C C7 7TV . . . C 2 -22.854 0.17 131.726 1 45.26 ? C7 7TV 501 A 1 HETATM 5 C C8 7TV . . . C 2 -22.492 1.629 131.488 1 46.04 ? C8 7TV 501 A 1 HETATM 6 C C10 7TV . . . C 2 -23.124 3.987 131.876 1 39.37 ? C10 7TV 501 A 1 HETATM 7 C C13 7TV . . . C 2 -17.137 -0.231 131.744 1 43.15 ? C13 7TV 501 A 1 HETATM 8 C C15 7TV . . . C 2 -17.211 -1.049 135.491 1 21.14 ? C15 7TV 501 A 1 HETATM 9 C C17 7TV . . . C 2 -17.911 -2.187 135.842 1 17.44 ? C17 7TV 501 A 1 HETATM 10 C C20 7TV . . . C 2 -17.213 -0.35 137.801 1 26.64 ? C20 7TV 501 A 1 HETATM 11 C C21 7TV . . . C 2 -18.275 -1.771 139.555 1 21.39 ? C21 7TV 501 A 1 HETATM 12 C C22 7TV . . . C 2 -17.778 -1.126 140.671 1 33.02 ? C22 7TV 501 A 1 HETATM 13 C C24 7TV . . . C 2 -19.134 -2.75 141.353 1 36.32 ? C24 7TV 501 A 1 HETATM 14 C C26 7TV . . . C 2 -16.477 1.74 130.455 1 50.39 ? C26 7TV 501 A 1 HETATM 15 C C28 7TV . . . C 2 -18.145 -0.043 130.608 1 43.96 ? C28 7TV 501 A 1 HETATM 16 N N 7TV . . . C 2 -17.689 -0.538 133.081 1 34.56 ? N 7TV 501 A 1 HETATM 17 C C 7TV . . . C 2 -21.085 -1.555 132.062 1 33.96 ? C 7TV 501 A 1 HETATM 18 O O 7TV . . . C 2 -21.704 -0.374 132.363 1 38.63 ? O 7TV 501 A 1 HETATM 19 C C1 7TV . . . C 2 -21.719 -2.596 131.405 1 39.89 ? C1 7TV 501 A 1 HETATM 20 O O1 7TV . . . C 2 -23.551 4.124 128.858 1 38.65 ? O1 7TV 501 A 1 HETATM 21 C C2 7TV . . . C 2 -21.026 -3.772 131.155 1 41.84 ? C2 7TV 501 A 1 HETATM 22 O O2 7TV . . . C 2 -22.59 6.016 129.367 1 48.71 ? O2 7TV 501 A 1 HETATM 23 C C3 7TV . . . C 2 -19.708 -3.909 131.566 1 35.3 ? C3 7TV 501 A 1 HETATM 24 O O3 7TV . . . C 2 -15.615 -0.819 133.795 1 30.42 ? O3 7TV 501 A 1 HETATM 25 O O4 7TV . . . C 2 -19.087 -2.775 139.974 1 35.62 ? O4 7TV 501 A 1 HETATM 26 C C9 7TV . . . C 2 -23.655 2.574 131.691 1 41.23 ? C9 7TV 501 A 1 HETATM 27 C C11 7TV . . . C 2 -23.914 4.975 131.035 1 47.48 ? C11 7TV 501 A 1 HETATM 28 C C12 7TV . . . C 2 -23.313 5.045 129.655 1 41.59 ? C12 7TV 501 A 1 HETATM 29 C C14 7TV . . . C 2 -16.811 -0.792 134.052 1 28.75 ? C14 7TV 501 A 1 HETATM 30 C C16 7TV . . . C 2 -16.861 -0.127 136.469 1 20.09 ? C16 7TV 501 A 1 HETATM 31 C C18 7TV . . . C 2 -18.266 -2.414 137.172 1 24.65 ? C18 7TV 501 A 1 HETATM 32 C C19 7TV . . . C 2 -17.927 -1.489 138.148 1 23.46 ? C19 7TV 501 A 1 HETATM 33 C C23 7TV . . . C 2 -18.324 -1.725 141.787 1 37.55 ? C23 7TV 501 A 1 HETATM 34 C C25 7TV . . . C 2 -16.4 1.106 131.833 1 46.48 ? C25 7TV 501 A 1 HETATM 35 C C27 7TV . . . C 2 -17.431 0.875 129.636 1 52.96 ? C27 7TV 501 A 1 HETATM 36 H H3 7TV . . . C 2 -18.053 -2.967 132.556 1 41.87 ? H3 7TV 501 A 1 HETATM 37 H H4 7TV . . . C 2 -19.406 -0.583 134.265 1 45.97 ? H4 7TV 501 A 1 HETATM 38 H H5 7TV . . . C 2 -19.531 0.402 132.808 1 45.97 ? H5 7TV 501 A 1 HETATM 39 H H6 7TV . . . C 2 -23.052 -0.34 130.781 1 54.31 ? H6 7TV 501 A 1 HETATM 40 H H7 7TV . . . C 2 -23.73 0.088 132.372 1 54.31 ? H7 7TV 501 A 1 HETATM 41 H H8 7TV . . . C 2 -21.683 1.91 132.166 1 55.25 ? H8 7TV 501 A 1 HETATM 42 H H9 7TV . . . C 2 -22.117 1.74 130.468 1 55.25 ? H9 7TV 501 A 1 HETATM 43 H H13 7TV . . . C 2 -23.194 4.267 132.93 1 47.25 ? H13 7TV 501 A 1 HETATM 44 H H12 7TV . . . C 2 -22.071 4.022 131.588 1 47.25 ? H12 7TV 501 A 1 HETATM 45 H H16 7TV . . . C 2 -16.418 -1.009 131.45 1 51.78 ? H16 7TV 501 A 1 HETATM 46 H H18 7TV . . . C 2 -18.185 -2.907 135.082 1 20.93 ? H18 7TV 501 A 1 HETATM 47 H H20 7TV . . . C 2 -16.934 0.367 138.563 1 31.97 ? H20 7TV 501 A 1 HETATM 48 H H21 7TV . . . C 2 -17.095 -0.285 140.669 1 39.62 ? H21 7TV 501 A 1 HETATM 49 H H23 7TV . . . C 2 -19.714 -3.414 141.982 1 43.58 ? H23 7TV 501 A 1 HETATM 50 H H26 7TV . . . C 2 -16.856 2.761 130.527 1 60.47 ? H26 7TV 501 A 1 HETATM 51 H H27 7TV . . . C 2 -15.489 1.761 129.99 1 60.47 ? H27 7TV 501 A 1 HETATM 52 H H31 7TV . . . C 2 -18.384 -0.998 130.137 1 52.75 ? H31 7TV 501 A 1 HETATM 53 H H30 7TV . . . C 2 -19.064 0.419 130.976 1 52.75 ? H30 7TV 501 A 1 HETATM 54 H H 7TV . . . C 2 -22.748 -2.491 131.082 1 47.86 ? H 7TV 501 A 1 HETATM 55 H H1 7TV . . . C 2 -21.514 -4.585 130.631 1 50.2 ? H1 7TV 501 A 1 HETATM 56 H H2 7TV . . . C 2 -19.169 -4.827 131.365 1 42.35 ? H2 7TV 501 A 1 HETATM 57 H H11 7TV . . . C 2 -24.227 2.274 132.571 1 49.48 ? H11 7TV 501 A 1 HETATM 58 H H10 7TV . . . C 2 -24.317 2.538 130.823 1 49.48 ? H10 7TV 501 A 1 HETATM 59 H H14 7TV . . . C 2 -24.956 4.656 130.969 1 56.98 ? H14 7TV 501 A 1 HETATM 60 H H15 7TV . . . C 2 -23.887 5.962 131.501 1 56.98 ? H15 7TV 501 A 1 HETATM 61 H H17 7TV . . . C 2 -16.312 0.766 136.199 1 24.11 ? H17 7TV 501 A 1 HETATM 62 H H19 7TV . . . C 2 -18.809 -3.311 137.441 1 29.59 ? H19 7TV 501 A 1 HETATM 63 H H22 7TV . . . C 2 -18.149 -1.439 142.817 1 45.06 ? H22 7TV 501 A 1 HETATM 64 H H24 7TV . . . C 2 -16.874 1.752 132.575 1 55.77 ? H24 7TV 501 A 1 HETATM 65 H H25 7TV . . . C 2 -15.358 0.947 132.12 1 55.77 ? H25 7TV 501 A 1 HETATM 66 H H28 7TV . . . C 2 -16.874 0.289 128.902 1 63.55 ? H28 7TV 501 A 1 HETATM 67 H H29 7TV . . . C 2 -18.152 1.503 129.109 1 63.55 ? H29 7TV 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 67 #