data_5U3U # _model_server_result.job_id 8GnWShMqXUSJG4ip7cBqvQ _model_server_result.datetime_utc '2024-11-14 23:35:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u3u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 5U3U # _exptl.entry_id 5U3U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.342 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'heptyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.91 _cell.angle_gamma 90 _cell.entry_id 5U3U _cell.length_a 39.6 _cell.length_b 94.55 _cell.length_c 96.57 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U3U _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,H 1 1 B,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # _chem_comp.formula 'C13 H26 O6' _chem_comp.formula_weight 278.342 _chem_comp.id B7G _chem_comp.mon_nstd_flag n _chem_comp.name 'heptyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'HEPTYL-BETA-D-GLUCOPYRANOSIDE;heptyl beta-D-glucoside;heptyl D-glucoside;heptyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 O5 B7G sing 141 n n C5 C4 B7G sing 142 n n C5 C6 B7G sing 143 n n C5 H5 B7G sing 144 n n O5 C1 B7G sing 145 n n C1 C2 B7G sing 146 n n C1 O1 B7G sing 147 n n C1 H1 B7G sing 148 n n C2 C3 B7G sing 149 n n C2 O2 B7G sing 150 n n C2 H2 B7G sing 151 n n C3 C4 B7G sing 152 n n C3 O3 B7G sing 153 n n C3 H3 B7G sing 154 n n C4 O4 B7G sing 155 n n C4 H4 B7G sing 156 n n C6 O6 B7G sing 157 n n C6 H61 B7G sing 158 n n C6 H62 B7G sing 159 n n O1 C7 B7G sing 160 n n C7 C8 B7G sing 161 n n C7 H71 B7G sing 162 n n C7 H72 B7G sing 163 n n C8 C9 B7G sing 164 n n C8 H81 B7G sing 165 n n C8 H82 B7G sing 166 n n C9 C10 B7G sing 167 n n C9 H91 B7G sing 168 n n C9 H92 B7G sing 169 n n C10 C11 B7G sing 170 n n C10 H101 B7G sing 171 n n C10 H102 B7G sing 172 n n C11 C12 B7G sing 173 n n C11 H111 B7G sing 174 n n C11 H112 B7G sing 175 n n C12 C13 B7G sing 176 n n C12 H121 B7G sing 177 n n C12 H122 B7G sing 178 n n O2 HO2 B7G sing 179 n n O3 HO3 B7G sing 180 n n O4 HO4 B7G sing 181 n n O6 HO6 B7G sing 182 n n C13 H131 B7G sing 183 n n C13 H132 B7G sing 184 n n C13 H133 B7G sing 185 n n # _pdbx_chem_comp_identifier.comp_id B7G _pdbx_chem_comp_identifier.identifier heptyl-b-D-Glucopyranoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 5U3U _atom_sites.fract_transf_matrix[1][1] 0.025253 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003509 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010455 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 7TV A 1 501 465 7TV LIG . D 3 PGO A 1 502 466 PGO PGO . E 4 PEG A 1 503 467 PEG PEG . F 5 B7G A 1 504 464 B7G B7G . G 5 B7G B 1 501 464 B7G B7G . H 6 HOH A 1 601 120 HOH HOH . H 6 HOH A 2 602 73 HOH HOH . H 6 HOH A 3 603 222 HOH HOH . H 6 HOH A 4 604 112 HOH HOH . H 6 HOH A 5 605 218 HOH HOH . H 6 HOH A 6 606 2 HOH HOH . H 6 HOH A 7 607 212 HOH HOH . H 6 HOH A 8 608 123 HOH HOH . H 6 HOH A 9 609 216 HOH HOH . H 6 HOH A 10 610 34 HOH HOH . H 6 HOH A 11 611 91 HOH HOH . H 6 HOH A 12 612 94 HOH HOH . H 6 HOH A 13 613 59 HOH HOH . H 6 HOH A 14 614 7 HOH HOH . H 6 HOH A 15 615 12 HOH HOH . H 6 HOH A 16 616 39 HOH HOH . H 6 HOH A 17 617 23 HOH HOH . H 6 HOH A 18 618 46 HOH HOH . H 6 HOH A 19 619 101 HOH HOH . H 6 HOH A 20 620 103 HOH HOH . H 6 HOH A 21 621 35 HOH HOH . H 6 HOH A 22 622 183 HOH HOH . H 6 HOH A 23 623 149 HOH HOH . H 6 HOH A 24 624 150 HOH HOH . H 6 HOH A 25 625 169 HOH HOH . H 6 HOH A 26 626 45 HOH HOH . H 6 HOH A 27 627 214 HOH HOH . H 6 HOH A 28 628 104 HOH HOH . H 6 HOH A 29 629 80 HOH HOH . H 6 HOH A 30 630 115 HOH HOH . H 6 HOH A 31 631 36 HOH HOH . H 6 HOH A 32 632 109 HOH HOH . H 6 HOH A 33 633 95 HOH HOH . H 6 HOH A 34 634 10 HOH HOH . H 6 HOH A 35 635 160 HOH HOH . H 6 HOH A 36 636 141 HOH HOH . H 6 HOH A 37 637 219 HOH HOH . H 6 HOH A 38 638 22 HOH HOH . H 6 HOH A 39 639 4 HOH HOH . H 6 HOH A 40 640 111 HOH HOH . H 6 HOH A 41 641 27 HOH HOH . H 6 HOH A 42 642 54 HOH HOH . H 6 HOH A 43 643 86 HOH HOH . H 6 HOH A 44 644 44 HOH HOH . H 6 HOH A 45 645 201 HOH HOH . H 6 HOH A 46 646 217 HOH HOH . H 6 HOH A 47 647 178 HOH HOH . H 6 HOH A 48 648 77 HOH HOH . H 6 HOH A 49 649 26 HOH HOH . H 6 HOH A 50 650 124 HOH HOH . H 6 HOH A 51 651 155 HOH HOH . H 6 HOH A 52 652 193 HOH HOH . H 6 HOH A 53 653 14 HOH HOH . H 6 HOH A 54 654 96 HOH HOH . H 6 HOH A 55 655 130 HOH HOH . H 6 HOH A 56 656 188 HOH HOH . H 6 HOH A 57 657 17 HOH HOH . H 6 HOH A 58 658 5 HOH HOH . H 6 HOH A 59 659 32 HOH HOH . H 6 HOH A 60 660 154 HOH HOH . H 6 HOH A 61 661 58 HOH HOH . H 6 HOH A 62 662 1 HOH HOH . H 6 HOH A 63 663 175 HOH HOH . H 6 HOH A 64 664 215 HOH HOH . H 6 HOH A 65 665 110 HOH HOH . H 6 HOH A 66 666 93 HOH HOH . H 6 HOH A 67 667 133 HOH HOH . H 6 HOH A 68 668 102 HOH HOH . H 6 HOH A 69 669 50 HOH HOH . H 6 HOH A 70 670 65 HOH HOH . H 6 HOH A 71 671 126 HOH HOH . H 6 HOH A 72 672 136 HOH HOH . H 6 HOH A 73 673 173 HOH HOH . H 6 HOH A 74 674 128 HOH HOH . H 6 HOH A 75 675 47 HOH HOH . I 6 HOH B 1 601 195 HOH HOH . I 6 HOH B 2 602 221 HOH HOH . I 6 HOH B 3 603 116 HOH HOH . I 6 HOH B 4 604 68 HOH HOH . I 6 HOH B 5 605 142 HOH HOH . I 6 HOH B 6 606 84 HOH HOH . I 6 HOH B 7 607 60 HOH HOH . I 6 HOH B 8 608 52 HOH HOH . I 6 HOH B 9 609 6 HOH HOH . I 6 HOH B 10 610 192 HOH HOH . I 6 HOH B 11 611 205 HOH HOH . I 6 HOH B 12 612 48 HOH HOH . I 6 HOH B 13 613 145 HOH HOH . I 6 HOH B 14 614 9 HOH HOH . I 6 HOH B 15 615 137 HOH HOH . I 6 HOH B 16 616 56 HOH HOH . I 6 HOH B 17 617 13 HOH HOH . I 6 HOH B 18 618 170 HOH HOH . I 6 HOH B 19 619 209 HOH HOH . I 6 HOH B 20 620 100 HOH HOH . I 6 HOH B 21 621 174 HOH HOH . I 6 HOH B 22 622 90 HOH HOH . I 6 HOH B 23 623 151 HOH HOH . I 6 HOH B 24 624 40 HOH HOH . I 6 HOH B 25 625 87 HOH HOH . I 6 HOH B 26 626 72 HOH HOH . I 6 HOH B 27 627 83 HOH HOH . I 6 HOH B 28 628 211 HOH HOH . I 6 HOH B 29 629 82 HOH HOH . I 6 HOH B 30 630 98 HOH HOH . I 6 HOH B 31 631 28 HOH HOH . I 6 HOH B 32 632 89 HOH HOH . I 6 HOH B 33 633 99 HOH HOH . I 6 HOH B 34 634 198 HOH HOH . I 6 HOH B 35 635 213 HOH HOH . I 6 HOH B 36 636 191 HOH HOH . I 6 HOH B 37 637 220 HOH HOH . I 6 HOH B 38 638 132 HOH HOH . I 6 HOH B 39 639 171 HOH HOH . I 6 HOH B 40 640 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 B7G . . . G 5 -21.929 20.671 116.676 1 49.52 ? C5 B7G 501 B 1 HETATM 2 O O5 B7G . . . G 5 -21.332 21.682 115.786 1 49.14 ? O5 B7G 501 B 1 HETATM 3 C C1 B7G . . . G 5 -22.082 22.937 115.799 1 41.44 ? C1 B7G 501 B 1 HETATM 4 C C2 B7G . . . G 5 -23.534 22.696 115.427 1 44.28 ? C2 B7G 501 B 1 HETATM 5 C C3 B7G . . . G 5 -24.169 21.698 116.336 1 42.65 ? C3 B7G 501 B 1 HETATM 6 C C4 B7G . . . G 5 -23.406 20.43 116.379 1 39.38 ? C4 B7G 501 B 1 HETATM 7 C C6 B7G . . . G 5 -21.162 19.394 116.535 1 49.55 ? C6 B7G 501 B 1 HETATM 8 O O1 B7G . . . G 5 -21.509 23.844 114.91 1 40.62 ? O1 B7G 501 B 1 HETATM 9 C C7 B7G . . . G 5 -20.114 24.103 115.138 1 42.46 ? C7 B7G 501 B 1 HETATM 10 C C8 B7G . . . G 5 -19.766 25.587 114.87 1 39.47 ? C8 B7G 501 B 1 HETATM 11 C C9 B7G . . . G 5 -18.327 25.722 114.342 1 39.1 ? C9 B7G 501 B 1 HETATM 12 C C10 B7G . . . G 5 -17.287 25.435 115.457 1 31.71 ? C10 B7G 501 B 1 HETATM 13 C C11 B7G . . . G 5 -16.121 26.452 115.393 1 32.98 ? C11 B7G 501 B 1 HETATM 14 C C12 B7G . . . G 5 -14.793 25.819 115.868 1 38.16 ? C12 B7G 501 B 1 HETATM 15 O O2 B7G . . . G 5 -24.221 23.949 115.501 1 46.71 ? O2 B7G 501 B 1 HETATM 16 O O3 B7G . . . G 5 -25.537 21.386 115.92 1 42.74 ? O3 B7G 501 B 1 HETATM 17 O O4 B7G . . . G 5 -23.969 19.59 117.394 1 32.93 ? O4 B7G 501 B 1 HETATM 18 O O6 B7G . . . G 5 -20.019 19.473 117.348 1 46.63 ? O6 B7G 501 B 1 HETATM 19 C C13 B7G . . . G 5 -14.193 24.95 114.751 1 45.27 ? C13 B7G 501 B 1 HETATM 20 H H5 B7G . . . G 5 -21.846 20.982 117.597 1 59.42 ? H5 B7G 501 B 1 HETATM 21 H H1 B7G . . . G 5 -22.047 23.314 116.696 1 49.73 ? H1 B7G 501 B 1 HETATM 22 H H2 B7G . . . G 5 -23.577 22.363 114.509 1 53.13 ? H2 B7G 501 B 1 HETATM 23 H H3 B7G . . . G 5 -24.197 22.072 117.233 1 51.19 ? H3 B7G 501 B 1 HETATM 24 H H4 B7G . . . G 5 -23.488 19.978 115.507 1 47.26 ? H4 B7G 501 B 1 HETATM 25 H H61 B7G . . . G 5 -20.897 19.272 115.607 1 59.46 ? H61 B7G 501 B 1 HETATM 26 H H62 B7G . . . G 5 -21.722 18.638 116.822 1 59.46 ? H62 B7G 501 B 1 HETATM 27 H H71 B7G . . . G 5 -19.573 23.532 114.561 1 50.95 ? H71 B7G 501 B 1 HETATM 28 H H72 B7G . . . G 5 -19.899 23.894 116.08 1 50.95 ? H72 B7G 501 B 1 HETATM 29 H H81 B7G . . . G 5 -19.843 26.076 115.708 1 47.37 ? H81 B7G 501 B 1 HETATM 30 H H82 B7G . . . G 5 -20.392 25.968 114.214 1 47.37 ? H82 B7G 501 B 1 HETATM 31 H H91 B7G . . . G 5 -18.188 26.622 114.005 1 46.92 ? H91 B7G 501 B 1 HETATM 32 H H92 B7G . . . G 5 -18.193 25.087 113.606 1 46.92 ? H92 B7G 501 B 1 HETATM 33 H H101 B7G . . . G 5 -17.72 25.511 116.325 1 38.05 ? H101 B7G 501 B 1 HETATM 34 H H102 B7G . . . G 5 -16.934 24.523 115.359 1 38.05 ? H102 B7G 501 B 1 HETATM 35 H H111 B7G . . . G 5 -16.013 26.766 114.464 1 39.58 ? H111 B7G 501 B 1 HETATM 36 H H112 B7G . . . G 5 -16.337 27.212 115.967 1 39.58 ? H112 B7G 501 B 1 HETATM 37 H H121 B7G . . . G 5 -14.959 25.27 116.657 1 45.79 ? H121 B7G 501 B 1 HETATM 38 H H122 B7G . . . G 5 -14.159 26.532 116.096 1 45.79 ? H122 B7G 501 B 1 HETATM 39 H HO2 B7G . . . G 5 -24.142 24.381 114.716 1 56.06 ? HO2 B7G 501 B 1 HETATM 40 H HO3 B7G . . . G 5 -26.113 21.798 116.46 1 51.29 ? HO3 B7G 501 B 1 HETATM 41 H HO4 B7G . . . G 5 -24.752 19.26 117.109 1 39.52 ? HO4 B7G 501 B 1 HETATM 42 H HO6 B7G . . . G 5 -19.311 19.202 116.889 1 55.96 ? HO6 B7G 501 B 1 HETATM 43 H H131 B7G . . . G 5 -14.847 24.263 114.482 1 54.32 ? H131 B7G 501 B 1 HETATM 44 H H132 B7G . . . G 5 -13.977 25.513 113.98 1 54.32 ? H132 B7G 501 B 1 HETATM 45 H H133 B7G . . . G 5 -13.382 24.518 115.076 1 54.32 ? H133 B7G 501 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 45 #