data_5U3U # _model_server_result.job_id 5aECCAWMUKrMWaZ4wedCVg _model_server_result.datetime_utc '2024-11-23 17:27:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u3u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 5U3U # _exptl.entry_id 5U3U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 76.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-1,2-PROPANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.91 _cell.angle_gamma 90 _cell.entry_id 5U3U _cell.length_a 39.6 _cell.length_b 94.55 _cell.length_c 96.57 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U3U _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,H 1 1 B,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O2' _chem_comp.formula_weight 76.094 _chem_comp.id PGO _chem_comp.mon_nstd_flag . _chem_comp.name S-1,2-PROPANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PGO sing 369 n n C1 O1 PGO sing 370 n n C1 H11 PGO sing 371 n n C1 H12 PGO sing 372 n n C2 C3 PGO sing 373 n n C2 O2 PGO sing 374 n n C2 H2 PGO sing 375 n n C3 H31 PGO sing 376 n n C3 H32 PGO sing 377 n n C3 H33 PGO sing 378 n n O1 HO1 PGO sing 379 n n O2 HO2 PGO sing 380 n n # _atom_sites.entry_id 5U3U _atom_sites.fract_transf_matrix[1][1] 0.025253 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003509 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010455 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 7TV A 1 501 465 7TV LIG . D 3 PGO A 1 502 466 PGO PGO . E 4 PEG A 1 503 467 PEG PEG . F 5 B7G A 1 504 464 B7G B7G . G 5 B7G B 1 501 464 B7G B7G . H 6 HOH A 1 601 120 HOH HOH . H 6 HOH A 2 602 73 HOH HOH . H 6 HOH A 3 603 222 HOH HOH . H 6 HOH A 4 604 112 HOH HOH . H 6 HOH A 5 605 218 HOH HOH . H 6 HOH A 6 606 2 HOH HOH . H 6 HOH A 7 607 212 HOH HOH . H 6 HOH A 8 608 123 HOH HOH . H 6 HOH A 9 609 216 HOH HOH . H 6 HOH A 10 610 34 HOH HOH . H 6 HOH A 11 611 91 HOH HOH . H 6 HOH A 12 612 94 HOH HOH . H 6 HOH A 13 613 59 HOH HOH . H 6 HOH A 14 614 7 HOH HOH . H 6 HOH A 15 615 12 HOH HOH . H 6 HOH A 16 616 39 HOH HOH . H 6 HOH A 17 617 23 HOH HOH . H 6 HOH A 18 618 46 HOH HOH . H 6 HOH A 19 619 101 HOH HOH . H 6 HOH A 20 620 103 HOH HOH . H 6 HOH A 21 621 35 HOH HOH . H 6 HOH A 22 622 183 HOH HOH . H 6 HOH A 23 623 149 HOH HOH . H 6 HOH A 24 624 150 HOH HOH . H 6 HOH A 25 625 169 HOH HOH . H 6 HOH A 26 626 45 HOH HOH . H 6 HOH A 27 627 214 HOH HOH . H 6 HOH A 28 628 104 HOH HOH . H 6 HOH A 29 629 80 HOH HOH . H 6 HOH A 30 630 115 HOH HOH . H 6 HOH A 31 631 36 HOH HOH . H 6 HOH A 32 632 109 HOH HOH . H 6 HOH A 33 633 95 HOH HOH . H 6 HOH A 34 634 10 HOH HOH . H 6 HOH A 35 635 160 HOH HOH . H 6 HOH A 36 636 141 HOH HOH . H 6 HOH A 37 637 219 HOH HOH . H 6 HOH A 38 638 22 HOH HOH . H 6 HOH A 39 639 4 HOH HOH . H 6 HOH A 40 640 111 HOH HOH . H 6 HOH A 41 641 27 HOH HOH . H 6 HOH A 42 642 54 HOH HOH . H 6 HOH A 43 643 86 HOH HOH . H 6 HOH A 44 644 44 HOH HOH . H 6 HOH A 45 645 201 HOH HOH . H 6 HOH A 46 646 217 HOH HOH . H 6 HOH A 47 647 178 HOH HOH . H 6 HOH A 48 648 77 HOH HOH . H 6 HOH A 49 649 26 HOH HOH . H 6 HOH A 50 650 124 HOH HOH . H 6 HOH A 51 651 155 HOH HOH . H 6 HOH A 52 652 193 HOH HOH . H 6 HOH A 53 653 14 HOH HOH . H 6 HOH A 54 654 96 HOH HOH . H 6 HOH A 55 655 130 HOH HOH . H 6 HOH A 56 656 188 HOH HOH . H 6 HOH A 57 657 17 HOH HOH . H 6 HOH A 58 658 5 HOH HOH . H 6 HOH A 59 659 32 HOH HOH . H 6 HOH A 60 660 154 HOH HOH . H 6 HOH A 61 661 58 HOH HOH . H 6 HOH A 62 662 1 HOH HOH . H 6 HOH A 63 663 175 HOH HOH . H 6 HOH A 64 664 215 HOH HOH . H 6 HOH A 65 665 110 HOH HOH . H 6 HOH A 66 666 93 HOH HOH . H 6 HOH A 67 667 133 HOH HOH . H 6 HOH A 68 668 102 HOH HOH . H 6 HOH A 69 669 50 HOH HOH . H 6 HOH A 70 670 65 HOH HOH . H 6 HOH A 71 671 126 HOH HOH . H 6 HOH A 72 672 136 HOH HOH . H 6 HOH A 73 673 173 HOH HOH . H 6 HOH A 74 674 128 HOH HOH . H 6 HOH A 75 675 47 HOH HOH . I 6 HOH B 1 601 195 HOH HOH . I 6 HOH B 2 602 221 HOH HOH . I 6 HOH B 3 603 116 HOH HOH . I 6 HOH B 4 604 68 HOH HOH . I 6 HOH B 5 605 142 HOH HOH . I 6 HOH B 6 606 84 HOH HOH . I 6 HOH B 7 607 60 HOH HOH . I 6 HOH B 8 608 52 HOH HOH . I 6 HOH B 9 609 6 HOH HOH . I 6 HOH B 10 610 192 HOH HOH . I 6 HOH B 11 611 205 HOH HOH . I 6 HOH B 12 612 48 HOH HOH . I 6 HOH B 13 613 145 HOH HOH . I 6 HOH B 14 614 9 HOH HOH . I 6 HOH B 15 615 137 HOH HOH . I 6 HOH B 16 616 56 HOH HOH . I 6 HOH B 17 617 13 HOH HOH . I 6 HOH B 18 618 170 HOH HOH . I 6 HOH B 19 619 209 HOH HOH . I 6 HOH B 20 620 100 HOH HOH . I 6 HOH B 21 621 174 HOH HOH . I 6 HOH B 22 622 90 HOH HOH . I 6 HOH B 23 623 151 HOH HOH . I 6 HOH B 24 624 40 HOH HOH . I 6 HOH B 25 625 87 HOH HOH . I 6 HOH B 26 626 72 HOH HOH . I 6 HOH B 27 627 83 HOH HOH . I 6 HOH B 28 628 211 HOH HOH . I 6 HOH B 29 629 82 HOH HOH . I 6 HOH B 30 630 98 HOH HOH . I 6 HOH B 31 631 28 HOH HOH . I 6 HOH B 32 632 89 HOH HOH . I 6 HOH B 33 633 99 HOH HOH . I 6 HOH B 34 634 198 HOH HOH . I 6 HOH B 35 635 213 HOH HOH . I 6 HOH B 36 636 191 HOH HOH . I 6 HOH B 37 637 220 HOH HOH . I 6 HOH B 38 638 132 HOH HOH . I 6 HOH B 39 639 171 HOH HOH . I 6 HOH B 40 640 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGO . . . D 3 -11.362 0.232 128.85 1 57.47 ? C1 PGO 502 A 1 HETATM 2 C C2 PGO . . . D 3 -12.658 -0.076 129.566 1 60.04 ? C2 PGO 502 A 1 HETATM 3 C C3 PGO . . . D 3 -13.803 0.172 128.61 1 56.31 ? C3 PGO 502 A 1 HETATM 4 O O1 PGO . . . D 3 -10.314 0.372 129.783 1 59.23 ? O1 PGO 502 A 1 HETATM 5 O O2 PGO . . . D 3 -12.805 0.74 130.71 1 64.59 ? O2 PGO 502 A 1 HETATM 6 H H11 PGO . . . D 3 -11.46 1.063 128.347 1 68.96 ? H11 PGO 502 A 1 HETATM 7 H H12 PGO . . . D 3 -11.151 -0.495 128.234 1 68.96 ? H12 PGO 502 A 1 HETATM 8 H H2 PGO . . . D 3 -12.661 -1.014 129.836 1 72.05 ? H2 PGO 502 A 1 HETATM 9 H H31 PGO . . . D 3 -13.888 1.13 128.446 1 67.57 ? H31 PGO 502 A 1 HETATM 10 H H32 PGO . . . D 3 -14.631 -0.166 129 1 67.57 ? H32 PGO 502 A 1 HETATM 11 H H33 PGO . . . D 3 -13.628 -0.288 127.767 1 67.57 ? H33 PGO 502 A 1 HETATM 12 H HO1 PGO . . . D 3 -10.629 0.731 130.531 1 71.08 ? HO1 PGO 502 A 1 HETATM 13 H HO2 PGO . . . D 3 -13.452 0.416 131.223 1 77.51 ? HO2 PGO 502 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 13 #