data_5U3X # _model_server_result.job_id D9HsDHPaODMjDHPW20isyA _model_server_result.datetime_utc '2024-11-23 15:51:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u3x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":501}' # _entry.id 5U3X # _exptl.entry_id 5U3X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.342 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'heptyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.03 _cell.angle_gamma 90 _cell.entry_id 5U3X _cell.length_a 39.1 _cell.length_b 92.94 _cell.length_c 96.16 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U3X _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,O 1 1 B,H,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # _chem_comp.formula 'C13 H26 O6' _chem_comp.formula_weight 278.342 _chem_comp.id B7G _chem_comp.mon_nstd_flag n _chem_comp.name 'heptyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'HEPTYL-BETA-D-GLUCOPYRANOSIDE;heptyl beta-D-glucoside;heptyl D-glucoside;heptyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 O5 B7G sing 137 n n C5 C4 B7G sing 138 n n C5 C6 B7G sing 139 n n C5 H5 B7G sing 140 n n O5 C1 B7G sing 141 n n C1 C2 B7G sing 142 n n C1 O1 B7G sing 143 n n C1 H1 B7G sing 144 n n C2 C3 B7G sing 145 n n C2 O2 B7G sing 146 n n C2 H2 B7G sing 147 n n C3 C4 B7G sing 148 n n C3 O3 B7G sing 149 n n C3 H3 B7G sing 150 n n C4 O4 B7G sing 151 n n C4 H4 B7G sing 152 n n C6 O6 B7G sing 153 n n C6 H61 B7G sing 154 n n C6 H62 B7G sing 155 n n O1 C7 B7G sing 156 n n C7 C8 B7G sing 157 n n C7 H71 B7G sing 158 n n C7 H72 B7G sing 159 n n C8 C9 B7G sing 160 n n C8 H81 B7G sing 161 n n C8 H82 B7G sing 162 n n C9 C10 B7G sing 163 n n C9 H91 B7G sing 164 n n C9 H92 B7G sing 165 n n C10 C11 B7G sing 166 n n C10 H101 B7G sing 167 n n C10 H102 B7G sing 168 n n C11 C12 B7G sing 169 n n C11 H111 B7G sing 170 n n C11 H112 B7G sing 171 n n C12 C13 B7G sing 172 n n C12 H121 B7G sing 173 n n C12 H122 B7G sing 174 n n O2 HO2 B7G sing 175 n n O3 HO3 B7G sing 176 n n O4 HO4 B7G sing 177 n n O6 HO6 B7G sing 178 n n C13 H131 B7G sing 179 n n C13 H132 B7G sing 180 n n C13 H133 B7G sing 181 n n # _pdbx_chem_comp_identifier.comp_id B7G _pdbx_chem_comp_identifier.identifier heptyl-b-D-Glucopyranoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 5U3X _atom_sites.fract_transf_matrix[1][1] 0.025575 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003608 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01076 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010502 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 7U4 A 1 501 465 7U4 LIG . D 3 B7G A 1 502 464 B7G B7G . E 4 PGO A 1 503 3 PGO PGO . F 5 PEG A 1 504 7 PEG PEG . G 4 PGO A 1 505 12 PGO PGO . H 3 B7G B 1 501 464 B7G B7G . I 2 7U4 B 1 502 465 7U4 LIG . J 5 PEG B 1 503 1 PEG PEG . K 4 PGO B 1 504 2 PGO PGO . L 5 PEG B 1 505 4 PEG PEG . M 4 PGO B 1 506 9 PGO PGO . N 4 PGO B 1 507 14 PGO PGO . O 6 HOH A 1 601 28 HOH HOH . O 6 HOH A 2 602 156 HOH HOH . O 6 HOH A 3 603 84 HOH HOH . O 6 HOH A 4 604 55 HOH HOH . O 6 HOH A 5 605 155 HOH HOH . O 6 HOH A 6 606 96 HOH HOH . O 6 HOH A 7 607 35 HOH HOH . O 6 HOH A 8 608 39 HOH HOH . O 6 HOH A 9 609 82 HOH HOH . O 6 HOH A 10 610 1 HOH HOH . O 6 HOH A 11 611 113 HOH HOH . O 6 HOH A 12 612 49 HOH HOH . O 6 HOH A 13 613 26 HOH HOH . O 6 HOH A 14 614 154 HOH HOH . O 6 HOH A 15 615 24 HOH HOH . O 6 HOH A 16 616 150 HOH HOH . O 6 HOH A 17 617 90 HOH HOH . O 6 HOH A 18 618 31 HOH HOH . O 6 HOH A 19 619 70 HOH HOH . O 6 HOH A 20 620 5 HOH HOH . O 6 HOH A 21 621 61 HOH HOH . O 6 HOH A 22 622 72 HOH HOH . O 6 HOH A 23 623 169 HOH HOH . O 6 HOH A 24 624 50 HOH HOH . O 6 HOH A 25 625 32 HOH HOH . O 6 HOH A 26 626 3 HOH HOH . O 6 HOH A 27 627 56 HOH HOH . O 6 HOH A 28 628 16 HOH HOH . O 6 HOH A 29 629 120 HOH HOH . O 6 HOH A 30 630 60 HOH HOH . O 6 HOH A 31 631 186 HOH HOH . O 6 HOH A 32 632 57 HOH HOH . O 6 HOH A 33 633 11 HOH HOH . O 6 HOH A 34 634 73 HOH HOH . O 6 HOH A 35 635 105 HOH HOH . O 6 HOH A 36 636 18 HOH HOH . O 6 HOH A 37 637 51 HOH HOH . O 6 HOH A 38 638 157 HOH HOH . O 6 HOH A 39 639 185 HOH HOH . O 6 HOH A 40 640 22 HOH HOH . O 6 HOH A 41 641 21 HOH HOH . O 6 HOH A 42 642 107 HOH HOH . O 6 HOH A 43 643 7 HOH HOH . O 6 HOH A 44 644 122 HOH HOH . O 6 HOH A 45 645 144 HOH HOH . O 6 HOH A 46 646 67 HOH HOH . O 6 HOH A 47 647 80 HOH HOH . O 6 HOH A 48 648 40 HOH HOH . O 6 HOH A 49 649 121 HOH HOH . O 6 HOH A 50 650 64 HOH HOH . O 6 HOH A 51 651 12 HOH HOH . O 6 HOH A 52 652 23 HOH HOH . O 6 HOH A 53 653 149 HOH HOH . O 6 HOH A 54 654 93 HOH HOH . O 6 HOH A 55 655 116 HOH HOH . O 6 HOH A 56 656 20 HOH HOH . O 6 HOH A 57 657 117 HOH HOH . O 6 HOH A 58 658 191 HOH HOH . O 6 HOH A 59 659 147 HOH HOH . O 6 HOH A 60 660 123 HOH HOH . O 6 HOH A 61 661 77 HOH HOH . O 6 HOH A 62 662 182 HOH HOH . O 6 HOH A 63 663 129 HOH HOH . P 6 HOH B 1 601 8 HOH HOH . P 6 HOH B 2 602 160 HOH HOH . P 6 HOH B 3 603 47 HOH HOH . P 6 HOH B 4 604 126 HOH HOH . P 6 HOH B 5 605 45 HOH HOH . P 6 HOH B 6 606 54 HOH HOH . P 6 HOH B 7 607 75 HOH HOH . P 6 HOH B 8 608 4 HOH HOH . P 6 HOH B 9 609 43 HOH HOH . P 6 HOH B 10 610 87 HOH HOH . P 6 HOH B 11 611 94 HOH HOH . P 6 HOH B 12 612 2 HOH HOH . P 6 HOH B 13 613 66 HOH HOH . P 6 HOH B 14 614 118 HOH HOH . P 6 HOH B 15 615 142 HOH HOH . P 6 HOH B 16 616 15 HOH HOH . P 6 HOH B 17 617 159 HOH HOH . P 6 HOH B 18 618 14 HOH HOH . P 6 HOH B 19 619 189 HOH HOH . P 6 HOH B 20 620 27 HOH HOH . P 6 HOH B 21 621 53 HOH HOH . P 6 HOH B 22 622 192 HOH HOH . P 6 HOH B 23 623 109 HOH HOH . P 6 HOH B 24 624 46 HOH HOH . P 6 HOH B 25 625 13 HOH HOH . P 6 HOH B 26 626 6 HOH HOH . P 6 HOH B 27 627 180 HOH HOH . P 6 HOH B 28 628 78 HOH HOH . P 6 HOH B 29 629 79 HOH HOH . P 6 HOH B 30 630 103 HOH HOH . P 6 HOH B 31 631 115 HOH HOH . P 6 HOH B 32 632 48 HOH HOH . P 6 HOH B 33 633 188 HOH HOH . P 6 HOH B 34 634 29 HOH HOH . P 6 HOH B 35 635 148 HOH HOH . P 6 HOH B 36 636 174 HOH HOH . P 6 HOH B 37 637 95 HOH HOH . P 6 HOH B 38 638 100 HOH HOH . P 6 HOH B 39 639 165 HOH HOH . P 6 HOH B 40 640 146 HOH HOH . P 6 HOH B 41 641 83 HOH HOH . P 6 HOH B 42 642 145 HOH HOH . P 6 HOH B 43 643 52 HOH HOH . P 6 HOH B 44 644 158 HOH HOH . P 6 HOH B 45 645 59 HOH HOH . P 6 HOH B 46 646 179 HOH HOH . P 6 HOH B 47 647 104 HOH HOH . P 6 HOH B 48 648 163 HOH HOH . P 6 HOH B 49 649 99 HOH HOH . P 6 HOH B 50 650 92 HOH HOH . P 6 HOH B 51 651 65 HOH HOH . P 6 HOH B 52 652 110 HOH HOH . P 6 HOH B 53 653 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 B7G . . . H 3 -21.671 22.753 116.112 1 49.58 ? C5 B7G 501 B 1 HETATM 2 O O5 B7G . . . H 3 -21.051 23.822 115.288 1 47.01 ? O5 B7G 501 B 1 HETATM 3 C C1 B7G . . . H 3 -21.869 25.037 115.257 1 44.84 ? C1 B7G 501 B 1 HETATM 4 C C2 B7G . . . H 3 -23.282 24.743 114.761 1 40.19 ? C2 B7G 501 B 1 HETATM 5 C C3 B7G . . . H 3 -23.945 23.771 115.688 1 44.29 ? C3 B7G 501 B 1 HETATM 6 C C4 B7G . . . H 3 -23.147 22.512 115.797 1 43.04 ? C4 B7G 501 B 1 HETATM 7 C C6 B7G . . . H 3 -20.949 21.456 115.9 1 50.92 ? C6 B7G 501 B 1 HETATM 8 O O1 B7G . . . H 3 -21.257 25.999 114.464 1 47.38 ? O1 B7G 501 B 1 HETATM 9 C C7 B7G . . . H 3 -19.842 26.117 114.642 1 45.96 ? C7 B7G 501 B 1 HETATM 10 C C8 B7G . . . H 3 -19.428 27.599 114.576 1 44.68 ? C8 B7G 501 B 1 HETATM 11 C C9 B7G . . . H 3 -17.99 27.727 114.036 1 39.67 ? C9 B7G 501 B 1 HETATM 12 C C10 B7G . . . H 3 -17.026 28.11 115.179 1 30.43 ? C10 B7G 501 B 1 HETATM 13 C C11 B7G . . . H 3 -15.606 28.257 114.608 1 30.45 ? C11 B7G 501 B 1 HETATM 14 C C12 B7G . . . H 3 -14.565 27.427 115.393 1 38.63 ? C12 B7G 501 B 1 HETATM 15 O O2 B7G . . . H 3 -24.016 25.977 114.685 1 34.16 ? O2 B7G 501 B 1 HETATM 16 O O3 B7G . . . H 3 -25.316 23.466 115.26 1 38.34 ? O3 B7G 501 B 1 HETATM 17 O O4 B7G . . . H 3 -23.648 21.666 116.84 1 42.1 ? O4 B7G 501 B 1 HETATM 18 O O6 B7G . . . H 3 -20.015 21.284 116.932 1 60.75 ? O6 B7G 501 B 1 HETATM 19 C C13 B7G . . . H 3 -13.421 27.021 114.443 1 36.51 ? C13 B7G 501 B 1 HETATM 20 H H5 B7G . . . H 3 -21.592 23.002 117.052 1 59.5 ? H5 B7G 501 B 1 HETATM 21 H H1 B7G . . . H 3 -21.932 25.385 116.164 1 53.81 ? H1 B7G 501 B 1 HETATM 22 H H2 B7G . . . H 3 -23.231 24.348 113.868 1 48.23 ? H2 B7G 501 B 1 HETATM 23 H H3 B7G . . . H 3 -23.988 24.177 116.57 1 53.15 ? H3 B7G 501 B 1 HETATM 24 H H4 B7G . . . H 3 -23.21 22.026 114.942 1 51.65 ? H4 B7G 501 B 1 HETATM 25 H H61 B7G . . . H 3 -20.489 21.476 115.043 1 61.1 ? H61 B7G 501 B 1 HETATM 26 H H62 B7G . . . H 3 -21.593 20.714 115.911 1 61.1 ? H62 B7G 501 B 1 HETATM 27 H H71 B7G . . . H 3 -19.375 25.612 113.95 1 55.15 ? H71 B7G 501 B 1 HETATM 28 H H72 B7G . . . H 3 -19.593 25.754 115.527 1 55.15 ? H72 B7G 501 B 1 HETATM 29 H H81 B7G . . . H 3 -19.466 27.971 115.474 1 53.61 ? H81 B7G 501 B 1 HETATM 30 H H82 B7G . . . H 3 -20.043 28.097 113.991 1 53.61 ? H82 B7G 501 B 1 HETATM 31 H H91 B7G . . . H 3 -17.959 28.415 113.351 1 47.6 ? H91 B7G 501 B 1 HETATM 32 H H92 B7G . . . H 3 -17.706 26.875 113.642 1 47.6 ? H92 B7G 501 B 1 HETATM 33 H H101 B7G . . . H 3 -17.031 27.401 115.846 1 36.52 ? H101 B7G 501 B 1 HETATM 34 H H102 B7G . . . H 3 -17.31 28.954 115.596 1 36.52 ? H102 B7G 501 B 1 HETATM 35 H H111 B7G . . . H 3 -15.601 27.962 113.667 1 36.54 ? H111 B7G 501 B 1 HETATM 36 H H112 B7G . . . H 3 -15.347 29.199 114.638 1 36.54 ? H112 B7G 501 B 1 HETATM 37 H H121 B7G . . . H 3 -14.211 27.957 116.132 1 46.36 ? H121 B7G 501 B 1 HETATM 38 H H122 B7G . . . H 3 -14.994 26.618 115.746 1 46.36 ? H122 B7G 501 B 1 HETATM 39 H HO2 B7G . . . H 3 -24.027 26.268 113.835 1 40.99 ? HO2 B7G 501 B 1 HETATM 40 H HO3 B7G . . . H 3 -25.887 23.993 115.695 1 46.01 ? HO3 B7G 501 B 1 HETATM 41 H HO4 B7G . . . H 3 -24.034 20.943 116.479 1 50.52 ? HO4 B7G 501 B 1 HETATM 42 H HO6 B7G . . . H 3 -19.482 20.604 116.737 1 72.9 ? HO6 B7G 501 B 1 HETATM 43 H H131 B7G . . . H 3 -12.778 26.451 114.927 1 43.81 ? H131 B7G 501 B 1 HETATM 44 H H132 B7G . . . H 3 -13.788 26.526 113.682 1 43.81 ? H132 B7G 501 B 1 HETATM 45 H H133 B7G . . . H 3 -12.966 27.821 114.121 1 43.81 ? H133 B7G 501 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 45 #