data_5U3X
#
_model_server_result.job_id            YMSdgjzWr7XeXcI-0D8Flg 
_model_server_result.datetime_utc      '2024-11-14 23:29:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5u3x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    5U3X 
#
_exptl.entry_id    5U3X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              278.342 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'heptyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.03 
_cell.angle_gamma         90 
_cell.entry_id            5U3X 
_cell.length_a            39.1 
_cell.length_b            92.94 
_cell.length_c            96.16 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5U3X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,O 1 1 
B,H,I,J,K,L,M,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
_chem_comp.formula           'C13 H26 O6' 
_chem_comp.formula_weight    278.342 
_chem_comp.id                B7G 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'heptyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'HEPTYL-BETA-D-GLUCOPYRANOSIDE;heptyl beta-D-glucoside;heptyl D-glucoside;heptyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 O5 B7G sing 137 n n 
C5 C4 B7G sing 138 n n 
C5 C6 B7G sing 139 n n 
C5 H5 B7G sing 140 n n 
O5 C1 B7G sing 141 n n 
C1 C2 B7G sing 142 n n 
C1 O1 B7G sing 143 n n 
C1 H1 B7G sing 144 n n 
C2 C3 B7G sing 145 n n 
C2 O2 B7G sing 146 n n 
C2 H2 B7G sing 147 n n 
C3 C4 B7G sing 148 n n 
C3 O3 B7G sing 149 n n 
C3 H3 B7G sing 150 n n 
C4 O4 B7G sing 151 n n 
C4 H4 B7G sing 152 n n 
C6 O6 B7G sing 153 n n 
C6 H61 B7G sing 154 n n 
C6 H62 B7G sing 155 n n 
O1 C7 B7G sing 156 n n 
C7 C8 B7G sing 157 n n 
C7 H71 B7G sing 158 n n 
C7 H72 B7G sing 159 n n 
C8 C9 B7G sing 160 n n 
C8 H81 B7G sing 161 n n 
C8 H82 B7G sing 162 n n 
C9 C10 B7G sing 163 n n 
C9 H91 B7G sing 164 n n 
C9 H92 B7G sing 165 n n 
C10 C11 B7G sing 166 n n 
C10 H101 B7G sing 167 n n 
C10 H102 B7G sing 168 n n 
C11 C12 B7G sing 169 n n 
C11 H111 B7G sing 170 n n 
C11 H112 B7G sing 171 n n 
C12 C13 B7G sing 172 n n 
C12 H121 B7G sing 173 n n 
C12 H122 B7G sing 174 n n 
O2 HO2 B7G sing 175 n n 
O3 HO3 B7G sing 176 n n 
O4 HO4 B7G sing 177 n n 
O6 HO6 B7G sing 178 n n 
C13 H131 B7G sing 179 n n 
C13 H132 B7G sing 180 n n 
C13 H133 B7G sing 181 n n 
#
_pdbx_chem_comp_identifier.comp_id            B7G 
_pdbx_chem_comp_identifier.identifier         heptyl-b-D-Glucopyranoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     5U3X 
_atom_sites.fract_transf_matrix[1][1]    0.025575 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003608 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01076 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010502 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 7U4 A 1 501 465 7U4 LIG . 
D 3 B7G A 1 502 464 B7G B7G . 
E 4 PGO A 1 503 3 PGO PGO . 
F 5 PEG A 1 504 7 PEG PEG . 
G 4 PGO A 1 505 12 PGO PGO . 
H 3 B7G B 1 501 464 B7G B7G . 
I 2 7U4 B 1 502 465 7U4 LIG . 
J 5 PEG B 1 503 1 PEG PEG . 
K 4 PGO B 1 504 2 PGO PGO . 
L 5 PEG B 1 505 4 PEG PEG . 
M 4 PGO B 1 506 9 PGO PGO . 
N 4 PGO B 1 507 14 PGO PGO . 
O 6 HOH A 1 601 28 HOH HOH . 
O 6 HOH A 2 602 156 HOH HOH . 
O 6 HOH A 3 603 84 HOH HOH . 
O 6 HOH A 4 604 55 HOH HOH . 
O 6 HOH A 5 605 155 HOH HOH . 
O 6 HOH A 6 606 96 HOH HOH . 
O 6 HOH A 7 607 35 HOH HOH . 
O 6 HOH A 8 608 39 HOH HOH . 
O 6 HOH A 9 609 82 HOH HOH . 
O 6 HOH A 10 610 1 HOH HOH . 
O 6 HOH A 11 611 113 HOH HOH . 
O 6 HOH A 12 612 49 HOH HOH . 
O 6 HOH A 13 613 26 HOH HOH . 
O 6 HOH A 14 614 154 HOH HOH . 
O 6 HOH A 15 615 24 HOH HOH . 
O 6 HOH A 16 616 150 HOH HOH . 
O 6 HOH A 17 617 90 HOH HOH . 
O 6 HOH A 18 618 31 HOH HOH . 
O 6 HOH A 19 619 70 HOH HOH . 
O 6 HOH A 20 620 5 HOH HOH . 
O 6 HOH A 21 621 61 HOH HOH . 
O 6 HOH A 22 622 72 HOH HOH . 
O 6 HOH A 23 623 169 HOH HOH . 
O 6 HOH A 24 624 50 HOH HOH . 
O 6 HOH A 25 625 32 HOH HOH . 
O 6 HOH A 26 626 3 HOH HOH . 
O 6 HOH A 27 627 56 HOH HOH . 
O 6 HOH A 28 628 16 HOH HOH . 
O 6 HOH A 29 629 120 HOH HOH . 
O 6 HOH A 30 630 60 HOH HOH . 
O 6 HOH A 31 631 186 HOH HOH . 
O 6 HOH A 32 632 57 HOH HOH . 
O 6 HOH A 33 633 11 HOH HOH . 
O 6 HOH A 34 634 73 HOH HOH . 
O 6 HOH A 35 635 105 HOH HOH . 
O 6 HOH A 36 636 18 HOH HOH . 
O 6 HOH A 37 637 51 HOH HOH . 
O 6 HOH A 38 638 157 HOH HOH . 
O 6 HOH A 39 639 185 HOH HOH . 
O 6 HOH A 40 640 22 HOH HOH . 
O 6 HOH A 41 641 21 HOH HOH . 
O 6 HOH A 42 642 107 HOH HOH . 
O 6 HOH A 43 643 7 HOH HOH . 
O 6 HOH A 44 644 122 HOH HOH . 
O 6 HOH A 45 645 144 HOH HOH . 
O 6 HOH A 46 646 67 HOH HOH . 
O 6 HOH A 47 647 80 HOH HOH . 
O 6 HOH A 48 648 40 HOH HOH . 
O 6 HOH A 49 649 121 HOH HOH . 
O 6 HOH A 50 650 64 HOH HOH . 
O 6 HOH A 51 651 12 HOH HOH . 
O 6 HOH A 52 652 23 HOH HOH . 
O 6 HOH A 53 653 149 HOH HOH . 
O 6 HOH A 54 654 93 HOH HOH . 
O 6 HOH A 55 655 116 HOH HOH . 
O 6 HOH A 56 656 20 HOH HOH . 
O 6 HOH A 57 657 117 HOH HOH . 
O 6 HOH A 58 658 191 HOH HOH . 
O 6 HOH A 59 659 147 HOH HOH . 
O 6 HOH A 60 660 123 HOH HOH . 
O 6 HOH A 61 661 77 HOH HOH . 
O 6 HOH A 62 662 182 HOH HOH . 
O 6 HOH A 63 663 129 HOH HOH . 
P 6 HOH B 1 601 8 HOH HOH . 
P 6 HOH B 2 602 160 HOH HOH . 
P 6 HOH B 3 603 47 HOH HOH . 
P 6 HOH B 4 604 126 HOH HOH . 
P 6 HOH B 5 605 45 HOH HOH . 
P 6 HOH B 6 606 54 HOH HOH . 
P 6 HOH B 7 607 75 HOH HOH . 
P 6 HOH B 8 608 4 HOH HOH . 
P 6 HOH B 9 609 43 HOH HOH . 
P 6 HOH B 10 610 87 HOH HOH . 
P 6 HOH B 11 611 94 HOH HOH . 
P 6 HOH B 12 612 2 HOH HOH . 
P 6 HOH B 13 613 66 HOH HOH . 
P 6 HOH B 14 614 118 HOH HOH . 
P 6 HOH B 15 615 142 HOH HOH . 
P 6 HOH B 16 616 15 HOH HOH . 
P 6 HOH B 17 617 159 HOH HOH . 
P 6 HOH B 18 618 14 HOH HOH . 
P 6 HOH B 19 619 189 HOH HOH . 
P 6 HOH B 20 620 27 HOH HOH . 
P 6 HOH B 21 621 53 HOH HOH . 
P 6 HOH B 22 622 192 HOH HOH . 
P 6 HOH B 23 623 109 HOH HOH . 
P 6 HOH B 24 624 46 HOH HOH . 
P 6 HOH B 25 625 13 HOH HOH . 
P 6 HOH B 26 626 6 HOH HOH . 
P 6 HOH B 27 627 180 HOH HOH . 
P 6 HOH B 28 628 78 HOH HOH . 
P 6 HOH B 29 629 79 HOH HOH . 
P 6 HOH B 30 630 103 HOH HOH . 
P 6 HOH B 31 631 115 HOH HOH . 
P 6 HOH B 32 632 48 HOH HOH . 
P 6 HOH B 33 633 188 HOH HOH . 
P 6 HOH B 34 634 29 HOH HOH . 
P 6 HOH B 35 635 148 HOH HOH . 
P 6 HOH B 36 636 174 HOH HOH . 
P 6 HOH B 37 637 95 HOH HOH . 
P 6 HOH B 38 638 100 HOH HOH . 
P 6 HOH B 39 639 165 HOH HOH . 
P 6 HOH B 40 640 146 HOH HOH . 
P 6 HOH B 41 641 83 HOH HOH . 
P 6 HOH B 42 642 145 HOH HOH . 
P 6 HOH B 43 643 52 HOH HOH . 
P 6 HOH B 44 644 158 HOH HOH . 
P 6 HOH B 45 645 59 HOH HOH . 
P 6 HOH B 46 646 179 HOH HOH . 
P 6 HOH B 47 647 104 HOH HOH . 
P 6 HOH B 48 648 163 HOH HOH . 
P 6 HOH B 49 649 99 HOH HOH . 
P 6 HOH B 50 650 92 HOH HOH . 
P 6 HOH B 51 651 65 HOH HOH . 
P 6 HOH B 52 652 110 HOH HOH . 
P 6 HOH B 53 653 132 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C5 B7G . . . D 3 -22.208 21.79 120.425 1 48.18 ? C5 B7G 502 A 1 
HETATM 2 O O5 B7G . . . D 3 -21.851 20.78 121.439 1 47.67 ? O5 B7G 502 A 1 
HETATM 3 C C1 B7G . . . D 3 -22.617 19.531 121.323 1 42.13 ? C1 B7G 502 A 1 
HETATM 4 C C2 B7G . . . D 3 -24.119 19.795 121.362 1 42.5 ? C2 B7G 502 A 1 
HETATM 5 C C3 B7G . . . D 3 -24.501 20.799 120.317 1 42.22 ? C3 B7G 502 A 1 
HETATM 6 C C4 B7G . . . D 3 -23.709 22.06 120.407 1 40.15 ? C4 B7G 502 A 1 
HETATM 7 C C6 B7G . . . D 3 -21.465 23.062 120.692 1 51.08 ? C6 B7G 502 A 1 
HETATM 8 O O1 B7G . . . D 3 -22.209 18.676 122.343 1 41.14 ? O1 B7G 502 A 1 
HETATM 9 C C7 B7G . . . D 3 -21.105 17.833 121.966 1 38.61 ? C7 B7G 502 A 1 
HETATM 10 C C8 B7G . . . D 3 -20.486 17.158 123.215 1 34.75 ? C8 B7G 502 A 1 
HETATM 11 C C9 B7G . . . D 3 -19.317 16.225 122.806 1 32.57 ? C9 B7G 502 A 1 
HETATM 12 C C10 B7G . . . D 3 -17.977 16.946 122.998 1 32.88 ? C10 B7G 502 A 1 
HETATM 13 C C11 B7G . . . D 3 -16.876 15.919 123.274 1 21.92 ? C11 B7G 502 A 1 
HETATM 14 C C12 B7G . . . D 3 -15.509 16.657 123.222 1 33.61 ? C12 B7G 502 A 1 
HETATM 15 O O2 B7G . . . D 3 -24.85 18.564 121.164 1 34.08 ? O2 B7G 502 A 1 
HETATM 16 O O3 B7G . . . D 3 -25.917 21.133 120.426 1 42.24 ? O3 B7G 502 A 1 
HETATM 17 O O4 B7G . . . D 3 -24.015 22.895 119.289 1 40.76 ? O4 B7G 502 A 1 
HETATM 18 O O6 B7G . . . D 3 -20.279 23.048 119.923 1 53.91 ? O6 B7G 502 A 1 
HETATM 19 C C13 B7G . . . D 3 -15.155 17.297 124.578 1 41.56 ? C13 B7G 502 A 1 
HETATM 20 H H5 B7G . . . D 3 -21.943 21.454 119.548 1 57.82 ? H5 B7G 502 A 1 
HETATM 21 H H1 B7G . . . D 3 -22.4 19.115 120.469 1 50.56 ? H1 B7G 502 A 1 
HETATM 22 H H2 B7G . . . D 3 -24.349 20.157 122.241 1 51 ? H2 B7G 502 A 1 
HETATM 23 H H3 B7G . . . D 3 -24.346 20.403 119.443 1 50.66 ? H3 B7G 502 A 1 
HETATM 24 H H4 B7G . . . D 3 -23.957 22.532 121.235 1 48.18 ? H4 B7G 502 A 1 
HETATM 25 H H61 B7G . . . D 3 -22.014 23.823 120.435 1 61.29 ? H61 B7G 502 A 1 
HETATM 26 H H62 B7G . . . D 3 -21.241 23.122 121.647 1 61.29 ? H62 B7G 502 A 1 
HETATM 27 H H71 B7G . . . D 3 -21.419 17.149 121.346 1 46.34 ? H71 B7G 502 A 1 
HETATM 28 H H72 B7G . . . D 3 -20.414 18.384 121.521 1 46.34 ? H72 B7G 502 A 1 
HETATM 29 H H81 B7G . . . D 3 -21.163 16.647 123.691 1 41.7 ? H81 B7G 502 A 1 
HETATM 30 H H82 B7G . . . D 3 -20.136 17.863 123.805 1 41.7 ? H82 B7G 502 A 1 
HETATM 31 H H91 B7G . . . D 3 -19.416 15.969 121.875 1 39.09 ? H91 B7G 502 A 1 
HETATM 32 H H92 B7G . . . D 3 -19.329 15.416 123.361 1 39.09 ? H92 B7G 502 A 1 
HETATM 33 H H101 B7G . . . D 3 -17.756 17.459 122.202 1 39.46 ? H101 B7G 502 A 1 
HETATM 34 H H102 B7G . . . D 3 -18.042 17.558 123.765 1 39.46 ? H102 B7G 502 A 1 
HETATM 35 H H111 B7G . . . D 3 -16.896 15.199 122.601 1 26.31 ? H111 B7G 502 A 1 
HETATM 36 H H112 B7G . . . D 3 -17.01 15.543 124.166 1 26.31 ? H112 B7G 502 A 1 
HETATM 37 H H121 B7G . . . D 3 -14.812 16.015 122.987 1 40.33 ? H121 B7G 502 A 1 
HETATM 38 H H122 B7G . . . D 3 -15.546 17.355 122.533 1 40.33 ? H122 B7G 502 A 1 
HETATM 39 H HO2 B7G . . . D 3 -25.307 18.363 121.912 1 40.9 ? HO2 B7G 502 A 1 
HETATM 40 H HO3 B7G . . . D 3 -26.35 20.831 119.708 1 50.69 ? HO3 B7G 502 A 1 
HETATM 41 H HO4 B7G . . . D 3 -24.676 23.459 119.51 1 48.91 ? HO4 B7G 502 A 1 
HETATM 42 H HO6 B7G . . . D 3 -20.1 23.868 119.64 1 64.69 ? HO6 B7G 502 A 1 
HETATM 43 H H131 B7G . . . D 3 -14.308 17.796 124.496 1 49.87 ? H131 B7G 502 A 1 
HETATM 44 H H132 B7G . . . D 3 -15.056 16.596 125.254 1 49.87 ? H132 B7G 502 A 1 
HETATM 45 H H133 B7G . . . D 3 -15.866 17.908 124.845 1 49.87 ? H133 B7G 502 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           369 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           45 
#