data_5U3X # _model_server_result.job_id 3-qhDCbHYcy3hhhgLZDmMA _model_server_result.datetime_utc '2024-11-14 23:24:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u3x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":502}' # _entry.id 5U3X # _exptl.entry_id 5U3X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 458.549 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-[2-({cyclopropyl[4-(pyridin-3-yl)benzene-1-carbonyl]amino}methyl)phenoxy]hexanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.03 _cell.angle_gamma 90 _cell.entry_id 5U3X _cell.length_a 39.1 _cell.length_b 92.94 _cell.length_c 96.16 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U3X _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,O 1 1 B,H,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # _chem_comp.formula 'C28 H30 N2 O4' _chem_comp.formula_weight 458.549 _chem_comp.id 7U4 _chem_comp.mon_nstd_flag . _chem_comp.name '6-[2-({cyclopropyl[4-(pyridin-3-yl)benzene-1-carbonyl]amino}methyl)phenoxy]hexanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C12 7U4 doub 1 n n O1 C12 7U4 sing 2 n n C12 C11 7U4 sing 3 n n C14 C15 7U4 sing 4 n n C14 C13 7U4 sing 5 n n C15 C13 7U4 sing 6 n n C2 C1 7U4 doub 7 n y C2 C3 7U4 sing 8 n y C11 C10 7U4 sing 9 n n C1 C 7U4 sing 10 n y C13 N 7U4 sing 11 n n C9 C10 7U4 sing 12 n n C9 C8 7U4 sing 13 n n C3 C4 7U4 doub 14 n y C7 O 7U4 sing 15 n n C7 C8 7U4 sing 16 n n C O 7U4 sing 17 n n C C5 7U4 doub 18 n y C4 C5 7U4 sing 19 n y C5 C6 7U4 sing 20 n n N C6 7U4 sing 21 n n N C16 7U4 sing 22 n n O3 C16 7U4 doub 23 n n C16 C17 7U4 sing 24 n n C17 C18 7U4 doub 25 n y C17 C19 7U4 sing 26 n y C18 C22 7U4 sing 27 n y C19 C20 7U4 doub 28 n y C22 C21 7U4 doub 29 n y C20 C21 7U4 sing 30 n y C21 C23 7U4 sing 31 n n C23 C25 7U4 doub 32 n y C23 C24 7U4 sing 33 n y C25 N1 7U4 sing 34 n y C24 C27 7U4 doub 35 n y N1 C26 7U4 doub 36 n y C27 C26 7U4 sing 37 n y C4 H3 7U4 sing 38 n n C6 H4 7U4 sing 39 n n C6 H5 7U4 sing 40 n n C7 H7 7U4 sing 41 n n C7 H6 7U4 sing 42 n n C8 H8 7U4 sing 43 n n C8 H9 7U4 sing 44 n n C10 H13 7U4 sing 45 n n C10 H12 7U4 sing 46 n n C13 H16 7U4 sing 47 n n C15 H19 7U4 sing 48 n n C15 H20 7U4 sing 49 n n C20 H23 7U4 sing 50 n n C22 H24 7U4 sing 51 n n C24 H25 7U4 sing 52 n n C26 H27 7U4 sing 53 n n C1 H 7U4 sing 54 n n O1 H29 7U4 sing 55 n n C2 H1 7U4 sing 56 n n C3 H2 7U4 sing 57 n n C9 H11 7U4 sing 58 n n C9 H10 7U4 sing 59 n n C11 H14 7U4 sing 60 n n C11 H15 7U4 sing 61 n n C14 H17 7U4 sing 62 n n C14 H18 7U4 sing 63 n n C18 H21 7U4 sing 64 n n C19 H22 7U4 sing 65 n n C25 H26 7U4 sing 66 n n C27 H28 7U4 sing 67 n n # _atom_sites.entry_id 5U3X _atom_sites.fract_transf_matrix[1][1] 0.025575 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003608 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01076 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010502 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 7U4 A 1 501 465 7U4 LIG . D 3 B7G A 1 502 464 B7G B7G . E 4 PGO A 1 503 3 PGO PGO . F 5 PEG A 1 504 7 PEG PEG . G 4 PGO A 1 505 12 PGO PGO . H 3 B7G B 1 501 464 B7G B7G . I 2 7U4 B 1 502 465 7U4 LIG . J 5 PEG B 1 503 1 PEG PEG . K 4 PGO B 1 504 2 PGO PGO . L 5 PEG B 1 505 4 PEG PEG . M 4 PGO B 1 506 9 PGO PGO . N 4 PGO B 1 507 14 PGO PGO . O 6 HOH A 1 601 28 HOH HOH . O 6 HOH A 2 602 156 HOH HOH . O 6 HOH A 3 603 84 HOH HOH . O 6 HOH A 4 604 55 HOH HOH . O 6 HOH A 5 605 155 HOH HOH . O 6 HOH A 6 606 96 HOH HOH . O 6 HOH A 7 607 35 HOH HOH . O 6 HOH A 8 608 39 HOH HOH . O 6 HOH A 9 609 82 HOH HOH . O 6 HOH A 10 610 1 HOH HOH . O 6 HOH A 11 611 113 HOH HOH . O 6 HOH A 12 612 49 HOH HOH . O 6 HOH A 13 613 26 HOH HOH . O 6 HOH A 14 614 154 HOH HOH . O 6 HOH A 15 615 24 HOH HOH . O 6 HOH A 16 616 150 HOH HOH . O 6 HOH A 17 617 90 HOH HOH . O 6 HOH A 18 618 31 HOH HOH . O 6 HOH A 19 619 70 HOH HOH . O 6 HOH A 20 620 5 HOH HOH . O 6 HOH A 21 621 61 HOH HOH . O 6 HOH A 22 622 72 HOH HOH . O 6 HOH A 23 623 169 HOH HOH . O 6 HOH A 24 624 50 HOH HOH . O 6 HOH A 25 625 32 HOH HOH . O 6 HOH A 26 626 3 HOH HOH . O 6 HOH A 27 627 56 HOH HOH . O 6 HOH A 28 628 16 HOH HOH . O 6 HOH A 29 629 120 HOH HOH . O 6 HOH A 30 630 60 HOH HOH . O 6 HOH A 31 631 186 HOH HOH . O 6 HOH A 32 632 57 HOH HOH . O 6 HOH A 33 633 11 HOH HOH . O 6 HOH A 34 634 73 HOH HOH . O 6 HOH A 35 635 105 HOH HOH . O 6 HOH A 36 636 18 HOH HOH . O 6 HOH A 37 637 51 HOH HOH . O 6 HOH A 38 638 157 HOH HOH . O 6 HOH A 39 639 185 HOH HOH . O 6 HOH A 40 640 22 HOH HOH . O 6 HOH A 41 641 21 HOH HOH . O 6 HOH A 42 642 107 HOH HOH . O 6 HOH A 43 643 7 HOH HOH . O 6 HOH A 44 644 122 HOH HOH . O 6 HOH A 45 645 144 HOH HOH . O 6 HOH A 46 646 67 HOH HOH . O 6 HOH A 47 647 80 HOH HOH . O 6 HOH A 48 648 40 HOH HOH . O 6 HOH A 49 649 121 HOH HOH . O 6 HOH A 50 650 64 HOH HOH . O 6 HOH A 51 651 12 HOH HOH . O 6 HOH A 52 652 23 HOH HOH . O 6 HOH A 53 653 149 HOH HOH . O 6 HOH A 54 654 93 HOH HOH . O 6 HOH A 55 655 116 HOH HOH . O 6 HOH A 56 656 20 HOH HOH . O 6 HOH A 57 657 117 HOH HOH . O 6 HOH A 58 658 191 HOH HOH . O 6 HOH A 59 659 147 HOH HOH . O 6 HOH A 60 660 123 HOH HOH . O 6 HOH A 61 661 77 HOH HOH . O 6 HOH A 62 662 182 HOH HOH . O 6 HOH A 63 663 129 HOH HOH . P 6 HOH B 1 601 8 HOH HOH . P 6 HOH B 2 602 160 HOH HOH . P 6 HOH B 3 603 47 HOH HOH . P 6 HOH B 4 604 126 HOH HOH . P 6 HOH B 5 605 45 HOH HOH . P 6 HOH B 6 606 54 HOH HOH . P 6 HOH B 7 607 75 HOH HOH . P 6 HOH B 8 608 4 HOH HOH . P 6 HOH B 9 609 43 HOH HOH . P 6 HOH B 10 610 87 HOH HOH . P 6 HOH B 11 611 94 HOH HOH . P 6 HOH B 12 612 2 HOH HOH . P 6 HOH B 13 613 66 HOH HOH . P 6 HOH B 14 614 118 HOH HOH . P 6 HOH B 15 615 142 HOH HOH . P 6 HOH B 16 616 15 HOH HOH . P 6 HOH B 17 617 159 HOH HOH . P 6 HOH B 18 618 14 HOH HOH . P 6 HOH B 19 619 189 HOH HOH . P 6 HOH B 20 620 27 HOH HOH . P 6 HOH B 21 621 53 HOH HOH . P 6 HOH B 22 622 192 HOH HOH . P 6 HOH B 23 623 109 HOH HOH . P 6 HOH B 24 624 46 HOH HOH . P 6 HOH B 25 625 13 HOH HOH . P 6 HOH B 26 626 6 HOH HOH . P 6 HOH B 27 627 180 HOH HOH . P 6 HOH B 28 628 78 HOH HOH . P 6 HOH B 29 629 79 HOH HOH . P 6 HOH B 30 630 103 HOH HOH . P 6 HOH B 31 631 115 HOH HOH . P 6 HOH B 32 632 48 HOH HOH . P 6 HOH B 33 633 188 HOH HOH . P 6 HOH B 34 634 29 HOH HOH . P 6 HOH B 35 635 148 HOH HOH . P 6 HOH B 36 636 174 HOH HOH . P 6 HOH B 37 637 95 HOH HOH . P 6 HOH B 38 638 100 HOH HOH . P 6 HOH B 39 639 165 HOH HOH . P 6 HOH B 40 640 146 HOH HOH . P 6 HOH B 41 641 83 HOH HOH . P 6 HOH B 42 642 145 HOH HOH . P 6 HOH B 43 643 52 HOH HOH . P 6 HOH B 44 644 158 HOH HOH . P 6 HOH B 45 645 59 HOH HOH . P 6 HOH B 46 646 179 HOH HOH . P 6 HOH B 47 647 104 HOH HOH . P 6 HOH B 48 648 163 HOH HOH . P 6 HOH B 49 649 99 HOH HOH . P 6 HOH B 50 650 92 HOH HOH . P 6 HOH B 51 651 65 HOH HOH . P 6 HOH B 52 652 110 HOH HOH . P 6 HOH B 53 653 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 7U4 . . . I 2 -12.888 44.882 97.888 1 47.26 ? N1 7U4 502 B 1 HETATM 2 C C4 7U4 . . . I 2 -15.116 44.908 106.423 1 19.88 ? C4 7U4 502 B 1 HETATM 3 C C5 7U4 . . . I 2 -15.795 43.718 106.128 1 28.69 ? C5 7U4 502 B 1 HETATM 4 C C6 7U4 . . . I 2 -15.052 42.464 105.718 1 23.79 ? C6 7U4 502 B 1 HETATM 5 C C7 7U4 . . . I 2 -19.198 42.296 105.924 1 42.61 ? C7 7U4 502 B 1 HETATM 6 C C8 7U4 . . . I 2 -19.553 40.957 105.288 1 38.21 ? C8 7U4 502 B 1 HETATM 7 C C10 7U4 . . . I 2 -19.612 38.554 105.77 1 31.46 ? C10 7U4 502 B 1 HETATM 8 C C13 7U4 . . . I 2 -13.581 42.317 107.72 1 42.19 ? C13 7U4 502 B 1 HETATM 9 C C15 7U4 . . . I 2 -13.439 40.817 107.996 1 39.93 ? C15 7U4 502 B 1 HETATM 10 C C17 7U4 . . . I 2 -12.563 43.038 104.099 1 27.81 ? C17 7U4 502 B 1 HETATM 11 C C20 7U4 . . . I 2 -11.605 42.466 101.953 1 28.41 ? C20 7U4 502 B 1 HETATM 12 C C21 7U4 . . . I 2 -12.32 43.502 101.349 1 36.46 ? C21 7U4 502 B 1 HETATM 13 C C22 7U4 . . . I 2 -13.156 44.303 102.159 1 35.75 ? C22 7U4 502 B 1 HETATM 14 C C24 7U4 . . . I 2 -11.232 43.054 99.101 1 36.18 ? C24 7U4 502 B 1 HETATM 15 C C26 7U4 . . . I 2 -11.979 44.233 97.157 1 35.01 ? C26 7U4 502 B 1 HETATM 16 N N 7U4 . . . I 2 -13.697 42.52 106.261 1 28.82 ? N 7U4 502 B 1 HETATM 17 C C 7U4 . . . I 2 -17.17 43.667 106.195 1 29.02 ? C 7U4 502 B 1 HETATM 18 O O 7U4 . . . I 2 -17.785 42.471 105.896 1 37.19 ? O 7U4 502 B 1 HETATM 19 C C1 7U4 . . . I 2 -17.875 44.802 106.577 1 19.42 ? C1 7U4 502 B 1 HETATM 20 O O1 7U4 . . . I 2 -18.813 36.143 108.465 1 28.3 ? O1 7U4 502 B 1 HETATM 21 C C2 7U4 . . . I 2 -17.207 45.977 106.873 1 27.39 ? C2 7U4 502 B 1 HETATM 22 O O2 7U4 . . . I 2 -20.593 37.375 108.156 1 25.98 ? O2 7U4 502 B 1 HETATM 23 C C3 7U4 . . . I 2 -15.821 46.049 106.782 1 23.76 ? C3 7U4 502 B 1 HETATM 24 O O3 7U4 . . . I 2 -11.479 42.726 106.111 1 32.02 ? O3 7U4 502 B 1 HETATM 25 C C9 7U4 . . . I 2 -18.825 39.829 105.995 1 32.94 ? C9 7U4 502 B 1 HETATM 26 C C11 7U4 . . . I 2 -18.928 37.352 106.398 1 32.59 ? C11 7U4 502 B 1 HETATM 27 C C12 7U4 . . . I 2 -19.479 36.952 107.776 1 31.22 ? C12 7U4 502 B 1 HETATM 28 C C14 7U4 . . . I 2 -14.673 41.571 108.479 1 47.73 ? C14 7U4 502 B 1 HETATM 29 C C16 7U4 . . . I 2 -12.582 42.749 105.575 1 28.41 ? C16 7U4 502 B 1 HETATM 30 C C18 7U4 . . . I 2 -13.278 44.081 103.528 1 32.4 ? C18 7U4 502 B 1 HETATM 31 C C19 7U4 . . . I 2 -11.725 42.251 103.314 1 25.38 ? C19 7U4 502 B 1 HETATM 32 C C23 7U4 . . . I 2 -12.185 43.739 99.868 1 39.51 ? C23 7U4 502 B 1 HETATM 33 C C25 7U4 . . . I 2 -13.011 44.669 99.209 1 44.27 ? C25 7U4 502 B 1 HETATM 34 C C27 7U4 . . . I 2 -11.136 43.304 97.737 1 35.45 ? C27 7U4 502 B 1 HETATM 35 H H3 7U4 . . . I 2 -14.035 44.941 106.358 1 23.86 ? H3 7U4 502 B 1 HETATM 36 H H4 7U4 . . . I 2 -15.014 42.393 104.629 1 28.54 ? H4 7U4 502 B 1 HETATM 37 H H5 7U4 . . . I 2 -15.571 41.582 106.101 1 28.54 ? H5 7U4 502 B 1 HETATM 38 H H7 7U4 . . . I 2 -19.683 43.106 105.376 1 51.13 ? H7 7U4 502 B 1 HETATM 39 H H6 7U4 . . . I 2 -19.554 42.32 106.957 1 51.13 ? H6 7U4 502 B 1 HETATM 40 H H8 7U4 . . . I 2 -20.631 40.794 105.351 1 45.85 ? H8 7U4 502 B 1 HETATM 41 H H9 7U4 . . . I 2 -19.274 40.967 104.232 1 45.85 ? H9 7U4 502 B 1 HETATM 42 H H13 7U4 . . . I 2 -20.61 38.665 106.197 1 37.75 ? H13 7U4 502 B 1 HETATM 43 H H12 7U4 . . . I 2 -19.725 38.385 104.697 1 37.75 ? H12 7U4 502 B 1 HETATM 44 H H16 7U4 . . . I 2 -12.862 42.904 108.308 1 50.63 ? H16 7U4 502 B 1 HETATM 45 H H19 7U4 . . . I 2 -12.717 40.536 108.765 1 47.92 ? H19 7U4 502 B 1 HETATM 46 H H20 7U4 . . . I 2 -13.585 40.155 107.14 1 47.92 ? H20 7U4 502 B 1 HETATM 47 H H23 7U4 . . . I 2 -10.955 41.836 101.358 1 34.09 ? H23 7U4 502 B 1 HETATM 48 H H24 7U4 . . . I 2 -13.72 45.107 101.702 1 42.9 ? H24 7U4 502 B 1 HETATM 49 H H25 7U4 . . . I 2 -10.575 42.331 99.569 1 43.42 ? H25 7U4 502 B 1 HETATM 50 H H27 7U4 . . . I 2 -11.909 44.428 96.094 1 42.01 ? H27 7U4 502 B 1 HETATM 51 H H 7U4 . . . I 2 -18.956 44.769 106.635 1 23.3 ? H 7U4 502 B 1 HETATM 52 H H1 7U4 . . . I 2 -17.771 46.858 107.155 1 32.87 ? H1 7U4 502 B 1 HETATM 53 H H2 7U4 . . . I 2 -15.299 46.967 107.022 1 28.52 ? H2 7U4 502 B 1 HETATM 54 H H11 7U4 . . . I 2 -17.815 39.723 105.593 1 39.52 ? H11 7U4 502 B 1 HETATM 55 H H10 7U4 . . . I 2 -18.753 40.041 107.064 1 39.52 ? H10 7U4 502 B 1 HETATM 56 H H14 7U4 . . . I 2 -17.862 37.567 106.496 1 39.11 ? H14 7U4 502 B 1 HETATM 57 H H15 7U4 . . . I 2 -19.025 36.5 105.721 1 39.11 ? H15 7U4 502 B 1 HETATM 58 H H17 7U4 . . . I 2 -15.597 41.382 107.928 1 57.27 ? H17 7U4 502 B 1 HETATM 59 H H18 7U4 . . . I 2 -14.729 41.763 109.552 1 57.27 ? H18 7U4 502 B 1 HETATM 60 H H21 7U4 . . . I 2 -13.917 44.71 104.135 1 38.88 ? H21 7U4 502 B 1 HETATM 61 H H22 7U4 . . . I 2 -11.159 41.451 103.776 1 30.46 ? H22 7U4 502 B 1 HETATM 62 H H26 7U4 . . . I 2 -13.756 45.216 99.772 1 53.12 ? H26 7U4 502 B 1 HETATM 63 H H28 7U4 . . . I 2 -10.404 42.78 97.136 1 42.55 ? H28 7U4 502 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 63 #