data_5U3X # _model_server_result.job_id 7wn1G5Lf7xYFAyJ9VG7ikg _model_server_result.datetime_utc '2024-11-14 23:49:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u3x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":506}' # _entry.id 5U3X # _exptl.entry_id 5U3X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 76.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-1,2-PROPANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.03 _cell.angle_gamma 90 _cell.entry_id 5U3X _cell.length_a 39.1 _cell.length_b 92.94 _cell.length_c 96.16 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U3X _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,O 1 1 B,H,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N ? 4 K N N ? 4 M N N ? 4 N N N # _chem_comp.formula 'C3 H8 O2' _chem_comp.formula_weight 76.094 _chem_comp.id PGO _chem_comp.mon_nstd_flag . _chem_comp.name S-1,2-PROPANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PGO sing 365 n n C1 O1 PGO sing 366 n n C1 H11 PGO sing 367 n n C1 H12 PGO sing 368 n n C2 C3 PGO sing 369 n n C2 O2 PGO sing 370 n n C2 H2 PGO sing 371 n n C3 H31 PGO sing 372 n n C3 H32 PGO sing 373 n n C3 H33 PGO sing 374 n n O1 HO1 PGO sing 375 n n O2 HO2 PGO sing 376 n n # _atom_sites.entry_id 5U3X _atom_sites.fract_transf_matrix[1][1] 0.025575 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003608 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01076 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010502 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 7U4 A 1 501 465 7U4 LIG . D 3 B7G A 1 502 464 B7G B7G . E 4 PGO A 1 503 3 PGO PGO . F 5 PEG A 1 504 7 PEG PEG . G 4 PGO A 1 505 12 PGO PGO . H 3 B7G B 1 501 464 B7G B7G . I 2 7U4 B 1 502 465 7U4 LIG . J 5 PEG B 1 503 1 PEG PEG . K 4 PGO B 1 504 2 PGO PGO . L 5 PEG B 1 505 4 PEG PEG . M 4 PGO B 1 506 9 PGO PGO . N 4 PGO B 1 507 14 PGO PGO . O 6 HOH A 1 601 28 HOH HOH . O 6 HOH A 2 602 156 HOH HOH . O 6 HOH A 3 603 84 HOH HOH . O 6 HOH A 4 604 55 HOH HOH . O 6 HOH A 5 605 155 HOH HOH . O 6 HOH A 6 606 96 HOH HOH . O 6 HOH A 7 607 35 HOH HOH . O 6 HOH A 8 608 39 HOH HOH . O 6 HOH A 9 609 82 HOH HOH . O 6 HOH A 10 610 1 HOH HOH . O 6 HOH A 11 611 113 HOH HOH . O 6 HOH A 12 612 49 HOH HOH . O 6 HOH A 13 613 26 HOH HOH . O 6 HOH A 14 614 154 HOH HOH . O 6 HOH A 15 615 24 HOH HOH . O 6 HOH A 16 616 150 HOH HOH . O 6 HOH A 17 617 90 HOH HOH . O 6 HOH A 18 618 31 HOH HOH . O 6 HOH A 19 619 70 HOH HOH . O 6 HOH A 20 620 5 HOH HOH . O 6 HOH A 21 621 61 HOH HOH . O 6 HOH A 22 622 72 HOH HOH . O 6 HOH A 23 623 169 HOH HOH . O 6 HOH A 24 624 50 HOH HOH . O 6 HOH A 25 625 32 HOH HOH . O 6 HOH A 26 626 3 HOH HOH . O 6 HOH A 27 627 56 HOH HOH . O 6 HOH A 28 628 16 HOH HOH . O 6 HOH A 29 629 120 HOH HOH . O 6 HOH A 30 630 60 HOH HOH . O 6 HOH A 31 631 186 HOH HOH . O 6 HOH A 32 632 57 HOH HOH . O 6 HOH A 33 633 11 HOH HOH . O 6 HOH A 34 634 73 HOH HOH . O 6 HOH A 35 635 105 HOH HOH . O 6 HOH A 36 636 18 HOH HOH . O 6 HOH A 37 637 51 HOH HOH . O 6 HOH A 38 638 157 HOH HOH . O 6 HOH A 39 639 185 HOH HOH . O 6 HOH A 40 640 22 HOH HOH . O 6 HOH A 41 641 21 HOH HOH . O 6 HOH A 42 642 107 HOH HOH . O 6 HOH A 43 643 7 HOH HOH . O 6 HOH A 44 644 122 HOH HOH . O 6 HOH A 45 645 144 HOH HOH . O 6 HOH A 46 646 67 HOH HOH . O 6 HOH A 47 647 80 HOH HOH . O 6 HOH A 48 648 40 HOH HOH . O 6 HOH A 49 649 121 HOH HOH . O 6 HOH A 50 650 64 HOH HOH . O 6 HOH A 51 651 12 HOH HOH . O 6 HOH A 52 652 23 HOH HOH . O 6 HOH A 53 653 149 HOH HOH . O 6 HOH A 54 654 93 HOH HOH . O 6 HOH A 55 655 116 HOH HOH . O 6 HOH A 56 656 20 HOH HOH . O 6 HOH A 57 657 117 HOH HOH . O 6 HOH A 58 658 191 HOH HOH . O 6 HOH A 59 659 147 HOH HOH . O 6 HOH A 60 660 123 HOH HOH . O 6 HOH A 61 661 77 HOH HOH . O 6 HOH A 62 662 182 HOH HOH . O 6 HOH A 63 663 129 HOH HOH . P 6 HOH B 1 601 8 HOH HOH . P 6 HOH B 2 602 160 HOH HOH . P 6 HOH B 3 603 47 HOH HOH . P 6 HOH B 4 604 126 HOH HOH . P 6 HOH B 5 605 45 HOH HOH . P 6 HOH B 6 606 54 HOH HOH . P 6 HOH B 7 607 75 HOH HOH . P 6 HOH B 8 608 4 HOH HOH . P 6 HOH B 9 609 43 HOH HOH . P 6 HOH B 10 610 87 HOH HOH . P 6 HOH B 11 611 94 HOH HOH . P 6 HOH B 12 612 2 HOH HOH . P 6 HOH B 13 613 66 HOH HOH . P 6 HOH B 14 614 118 HOH HOH . P 6 HOH B 15 615 142 HOH HOH . P 6 HOH B 16 616 15 HOH HOH . P 6 HOH B 17 617 159 HOH HOH . P 6 HOH B 18 618 14 HOH HOH . P 6 HOH B 19 619 189 HOH HOH . P 6 HOH B 20 620 27 HOH HOH . P 6 HOH B 21 621 53 HOH HOH . P 6 HOH B 22 622 192 HOH HOH . P 6 HOH B 23 623 109 HOH HOH . P 6 HOH B 24 624 46 HOH HOH . P 6 HOH B 25 625 13 HOH HOH . P 6 HOH B 26 626 6 HOH HOH . P 6 HOH B 27 627 180 HOH HOH . P 6 HOH B 28 628 78 HOH HOH . P 6 HOH B 29 629 79 HOH HOH . P 6 HOH B 30 630 103 HOH HOH . P 6 HOH B 31 631 115 HOH HOH . P 6 HOH B 32 632 48 HOH HOH . P 6 HOH B 33 633 188 HOH HOH . P 6 HOH B 34 634 29 HOH HOH . P 6 HOH B 35 635 148 HOH HOH . P 6 HOH B 36 636 174 HOH HOH . P 6 HOH B 37 637 95 HOH HOH . P 6 HOH B 38 638 100 HOH HOH . P 6 HOH B 39 639 165 HOH HOH . P 6 HOH B 40 640 146 HOH HOH . P 6 HOH B 41 641 83 HOH HOH . P 6 HOH B 42 642 145 HOH HOH . P 6 HOH B 43 643 52 HOH HOH . P 6 HOH B 44 644 158 HOH HOH . P 6 HOH B 45 645 59 HOH HOH . P 6 HOH B 46 646 179 HOH HOH . P 6 HOH B 47 647 104 HOH HOH . P 6 HOH B 48 648 163 HOH HOH . P 6 HOH B 49 649 99 HOH HOH . P 6 HOH B 50 650 92 HOH HOH . P 6 HOH B 51 651 65 HOH HOH . P 6 HOH B 52 652 110 HOH HOH . P 6 HOH B 53 653 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGO . . . M 4 -24.606 49.494 118.267 1 78.13 ? C1 PGO 506 B 1 HETATM 2 C C2 PGO . . . M 4 -23.793 50.619 118.877 1 75.76 ? C2 PGO 506 B 1 HETATM 3 C C3 PGO . . . M 4 -24.715 51.708 119.374 1 74.26 ? C3 PGO 506 B 1 HETATM 4 O O1 PGO . . . M 4 -24.667 49.606 116.859 1 80.17 ? O1 PGO 506 B 1 HETATM 5 O O2 PGO . . . M 4 -22.918 51.156 117.913 1 80.7 ? O2 PGO 506 B 1 HETATM 6 H H11 PGO . . . M 4 -24.196 48.64 118.502 1 93.75 ? H11 PGO 506 B 1 HETATM 7 H H12 PGO . . . M 4 -25.512 49.523 118.629 1 93.75 ? H12 PGO 506 B 1 HETATM 8 H H2 PGO . . . M 4 -23.272 50.271 119.626 1 90.92 ? H2 PGO 506 B 1 HETATM 9 H H31 PGO . . . M 4 -25.196 51.392 120.162 1 89.11 ? H31 PGO 506 B 1 HETATM 10 H H32 PGO . . . M 4 -25.354 51.938 118.673 1 89.11 ? H32 PGO 506 B 1 HETATM 11 H H33 PGO . . . M 4 -24.19 52.497 119.607 1 89.11 ? H33 PGO 506 B 1 HETATM 12 H HO1 PGO . . . M 4 -24.983 48.851 116.515 1 96.2 ? HO1 PGO 506 B 1 HETATM 13 H HO2 PGO . . . M 4 -22.094 51.186 118.244 1 96.84 ? HO2 PGO 506 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #