data_5U3X
#
_model_server_result.job_id            q_Jl8RE9tqgiBtOXzE8MXQ 
_model_server_result.datetime_utc      '2024-11-14 23:22:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5u3x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":507}' 
#
_entry.id    5U3X 
#
_exptl.entry_id    5U3X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              76.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-1,2-PROPANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.03 
_cell.angle_gamma         90 
_cell.entry_id            5U3X 
_cell.length_a            39.1 
_cell.length_b            92.94 
_cell.length_c            96.16 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5U3X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,O 1 1 
B,H,I,J,K,L,M,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 G N N 
? 4 K N N 
? 4 M N N 
? 4 N N N 
#
_chem_comp.formula           'C3 H8 O2' 
_chem_comp.formula_weight    76.094 
_chem_comp.id                PGO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-1,2-PROPANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PGO sing 365 n n 
C1 O1 PGO sing 366 n n 
C1 H11 PGO sing 367 n n 
C1 H12 PGO sing 368 n n 
C2 C3 PGO sing 369 n n 
C2 O2 PGO sing 370 n n 
C2 H2 PGO sing 371 n n 
C3 H31 PGO sing 372 n n 
C3 H32 PGO sing 373 n n 
C3 H33 PGO sing 374 n n 
O1 HO1 PGO sing 375 n n 
O2 HO2 PGO sing 376 n n 
#
_atom_sites.entry_id                     5U3X 
_atom_sites.fract_transf_matrix[1][1]    0.025575 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003608 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01076 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010502 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 7U4 A 1 501 465 7U4 LIG . 
D 3 B7G A 1 502 464 B7G B7G . 
E 4 PGO A 1 503 3 PGO PGO . 
F 5 PEG A 1 504 7 PEG PEG . 
G 4 PGO A 1 505 12 PGO PGO . 
H 3 B7G B 1 501 464 B7G B7G . 
I 2 7U4 B 1 502 465 7U4 LIG . 
J 5 PEG B 1 503 1 PEG PEG . 
K 4 PGO B 1 504 2 PGO PGO . 
L 5 PEG B 1 505 4 PEG PEG . 
M 4 PGO B 1 506 9 PGO PGO . 
N 4 PGO B 1 507 14 PGO PGO . 
O 6 HOH A 1 601 28 HOH HOH . 
O 6 HOH A 2 602 156 HOH HOH . 
O 6 HOH A 3 603 84 HOH HOH . 
O 6 HOH A 4 604 55 HOH HOH . 
O 6 HOH A 5 605 155 HOH HOH . 
O 6 HOH A 6 606 96 HOH HOH . 
O 6 HOH A 7 607 35 HOH HOH . 
O 6 HOH A 8 608 39 HOH HOH . 
O 6 HOH A 9 609 82 HOH HOH . 
O 6 HOH A 10 610 1 HOH HOH . 
O 6 HOH A 11 611 113 HOH HOH . 
O 6 HOH A 12 612 49 HOH HOH . 
O 6 HOH A 13 613 26 HOH HOH . 
O 6 HOH A 14 614 154 HOH HOH . 
O 6 HOH A 15 615 24 HOH HOH . 
O 6 HOH A 16 616 150 HOH HOH . 
O 6 HOH A 17 617 90 HOH HOH . 
O 6 HOH A 18 618 31 HOH HOH . 
O 6 HOH A 19 619 70 HOH HOH . 
O 6 HOH A 20 620 5 HOH HOH . 
O 6 HOH A 21 621 61 HOH HOH . 
O 6 HOH A 22 622 72 HOH HOH . 
O 6 HOH A 23 623 169 HOH HOH . 
O 6 HOH A 24 624 50 HOH HOH . 
O 6 HOH A 25 625 32 HOH HOH . 
O 6 HOH A 26 626 3 HOH HOH . 
O 6 HOH A 27 627 56 HOH HOH . 
O 6 HOH A 28 628 16 HOH HOH . 
O 6 HOH A 29 629 120 HOH HOH . 
O 6 HOH A 30 630 60 HOH HOH . 
O 6 HOH A 31 631 186 HOH HOH . 
O 6 HOH A 32 632 57 HOH HOH . 
O 6 HOH A 33 633 11 HOH HOH . 
O 6 HOH A 34 634 73 HOH HOH . 
O 6 HOH A 35 635 105 HOH HOH . 
O 6 HOH A 36 636 18 HOH HOH . 
O 6 HOH A 37 637 51 HOH HOH . 
O 6 HOH A 38 638 157 HOH HOH . 
O 6 HOH A 39 639 185 HOH HOH . 
O 6 HOH A 40 640 22 HOH HOH . 
O 6 HOH A 41 641 21 HOH HOH . 
O 6 HOH A 42 642 107 HOH HOH . 
O 6 HOH A 43 643 7 HOH HOH . 
O 6 HOH A 44 644 122 HOH HOH . 
O 6 HOH A 45 645 144 HOH HOH . 
O 6 HOH A 46 646 67 HOH HOH . 
O 6 HOH A 47 647 80 HOH HOH . 
O 6 HOH A 48 648 40 HOH HOH . 
O 6 HOH A 49 649 121 HOH HOH . 
O 6 HOH A 50 650 64 HOH HOH . 
O 6 HOH A 51 651 12 HOH HOH . 
O 6 HOH A 52 652 23 HOH HOH . 
O 6 HOH A 53 653 149 HOH HOH . 
O 6 HOH A 54 654 93 HOH HOH . 
O 6 HOH A 55 655 116 HOH HOH . 
O 6 HOH A 56 656 20 HOH HOH . 
O 6 HOH A 57 657 117 HOH HOH . 
O 6 HOH A 58 658 191 HOH HOH . 
O 6 HOH A 59 659 147 HOH HOH . 
O 6 HOH A 60 660 123 HOH HOH . 
O 6 HOH A 61 661 77 HOH HOH . 
O 6 HOH A 62 662 182 HOH HOH . 
O 6 HOH A 63 663 129 HOH HOH . 
P 6 HOH B 1 601 8 HOH HOH . 
P 6 HOH B 2 602 160 HOH HOH . 
P 6 HOH B 3 603 47 HOH HOH . 
P 6 HOH B 4 604 126 HOH HOH . 
P 6 HOH B 5 605 45 HOH HOH . 
P 6 HOH B 6 606 54 HOH HOH . 
P 6 HOH B 7 607 75 HOH HOH . 
P 6 HOH B 8 608 4 HOH HOH . 
P 6 HOH B 9 609 43 HOH HOH . 
P 6 HOH B 10 610 87 HOH HOH . 
P 6 HOH B 11 611 94 HOH HOH . 
P 6 HOH B 12 612 2 HOH HOH . 
P 6 HOH B 13 613 66 HOH HOH . 
P 6 HOH B 14 614 118 HOH HOH . 
P 6 HOH B 15 615 142 HOH HOH . 
P 6 HOH B 16 616 15 HOH HOH . 
P 6 HOH B 17 617 159 HOH HOH . 
P 6 HOH B 18 618 14 HOH HOH . 
P 6 HOH B 19 619 189 HOH HOH . 
P 6 HOH B 20 620 27 HOH HOH . 
P 6 HOH B 21 621 53 HOH HOH . 
P 6 HOH B 22 622 192 HOH HOH . 
P 6 HOH B 23 623 109 HOH HOH . 
P 6 HOH B 24 624 46 HOH HOH . 
P 6 HOH B 25 625 13 HOH HOH . 
P 6 HOH B 26 626 6 HOH HOH . 
P 6 HOH B 27 627 180 HOH HOH . 
P 6 HOH B 28 628 78 HOH HOH . 
P 6 HOH B 29 629 79 HOH HOH . 
P 6 HOH B 30 630 103 HOH HOH . 
P 6 HOH B 31 631 115 HOH HOH . 
P 6 HOH B 32 632 48 HOH HOH . 
P 6 HOH B 33 633 188 HOH HOH . 
P 6 HOH B 34 634 29 HOH HOH . 
P 6 HOH B 35 635 148 HOH HOH . 
P 6 HOH B 36 636 174 HOH HOH . 
P 6 HOH B 37 637 95 HOH HOH . 
P 6 HOH B 38 638 100 HOH HOH . 
P 6 HOH B 39 639 165 HOH HOH . 
P 6 HOH B 40 640 146 HOH HOH . 
P 6 HOH B 41 641 83 HOH HOH . 
P 6 HOH B 42 642 145 HOH HOH . 
P 6 HOH B 43 643 52 HOH HOH . 
P 6 HOH B 44 644 158 HOH HOH . 
P 6 HOH B 45 645 59 HOH HOH . 
P 6 HOH B 46 646 179 HOH HOH . 
P 6 HOH B 47 647 104 HOH HOH . 
P 6 HOH B 48 648 163 HOH HOH . 
P 6 HOH B 49 649 99 HOH HOH . 
P 6 HOH B 50 650 92 HOH HOH . 
P 6 HOH B 51 651 65 HOH HOH . 
P 6 HOH B 52 652 110 HOH HOH . 
P 6 HOH B 53 653 132 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PGO . . . N 4 -4.799 56.993 103.309 1 68.72 ? C1 PGO 507 B 1 
HETATM 2 C C2 PGO . . . N 4 -3.715 55.944 103.426 1 65.83 ? C2 PGO 507 B 1 
HETATM 3 C C3 PGO . . . N 4 -2.362 56.568 103.147 1 66.11 ? C3 PGO 507 B 1 
HETATM 4 O O1 PGO . . . N 4 -5.573 57.022 104.49 1 66.99 ? O1 PGO 507 B 1 
HETATM 5 O O2 PGO . . . N 4 -3.976 54.924 102.495 1 68.55 ? O2 PGO 507 B 1 
HETATM 6 H H11 PGO . . . N 4 -5.374 56.781 102.55 1 82.46 ? H11 PGO 507 B 1 
HETATM 7 H H12 PGO . . . N 4 -4.389 57.868 103.169 1 82.46 ? H12 PGO 507 B 1 
HETATM 8 H H2 PGO . . . N 4 -3.72 55.57 104.328 1 78.99 ? H2 PGO 507 B 1 
HETATM 9 H H31 PGO . . . N 4 -1.673 55.878 103.175 1 79.34 ? H31 PGO 507 B 1 
HETATM 10 H H32 PGO . . . N 4 -2.372 56.983 102.263 1 79.34 ? H32 PGO 507 B 1 
HETATM 11 H H33 PGO . . . N 4 -2.171 57.247 103.822 1 79.34 ? H33 PGO 507 B 1 
HETATM 12 H HO1 PGO . . . N 4 -6.283 57.541 104.366 1 80.39 ? HO1 PGO 507 B 1 
HETATM 13 H HO2 PGO . . . N 4 -3.778 54.137 102.855 1 82.26 ? HO2 PGO 507 B 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           394 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           13 
#