data_5U3Y
#
_model_server_result.job_id            wd_p5BoUrNcRMZCVcZhiog 
_model_server_result.datetime_utc      '2024-11-14 23:36:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5u3y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    5U3Y 
#
_exptl.entry_id    5U3Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              278.342 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'heptyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.53 
_cell.angle_gamma         90 
_cell.entry_id            5U3Y 
_cell.length_a            39.44 
_cell.length_b            94.94 
_cell.length_c            96.01 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5U3Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,P 1 1 
B,J,K,L,M,N,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 I N N 
#
_chem_comp.formula           'C13 H26 O6' 
_chem_comp.formula_weight    278.342 
_chem_comp.id                B7G 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'heptyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'HEPTYL-BETA-D-GLUCOPYRANOSIDE;heptyl beta-D-glucoside;heptyl D-glucoside;heptyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 O5 B7G sing 135 n n 
C5 C4 B7G sing 136 n n 
C5 C6 B7G sing 137 n n 
C5 H5 B7G sing 138 n n 
O5 C1 B7G sing 139 n n 
C1 C2 B7G sing 140 n n 
C1 O1 B7G sing 141 n n 
C1 H1 B7G sing 142 n n 
C2 C3 B7G sing 143 n n 
C2 O2 B7G sing 144 n n 
C2 H2 B7G sing 145 n n 
C3 C4 B7G sing 146 n n 
C3 O3 B7G sing 147 n n 
C3 H3 B7G sing 148 n n 
C4 O4 B7G sing 149 n n 
C4 H4 B7G sing 150 n n 
C6 O6 B7G sing 151 n n 
C6 H61 B7G sing 152 n n 
C6 H62 B7G sing 153 n n 
O1 C7 B7G sing 154 n n 
C7 C8 B7G sing 155 n n 
C7 H71 B7G sing 156 n n 
C7 H72 B7G sing 157 n n 
C8 C9 B7G sing 158 n n 
C8 H81 B7G sing 159 n n 
C8 H82 B7G sing 160 n n 
C9 C10 B7G sing 161 n n 
C9 H91 B7G sing 162 n n 
C9 H92 B7G sing 163 n n 
C10 C11 B7G sing 164 n n 
C10 H101 B7G sing 165 n n 
C10 H102 B7G sing 166 n n 
C11 C12 B7G sing 167 n n 
C11 H111 B7G sing 168 n n 
C11 H112 B7G sing 169 n n 
C12 C13 B7G sing 170 n n 
C12 H121 B7G sing 171 n n 
C12 H122 B7G sing 172 n n 
O2 HO2 B7G sing 173 n n 
O3 HO3 B7G sing 174 n n 
O4 HO4 B7G sing 175 n n 
O6 HO6 B7G sing 176 n n 
C13 H131 B7G sing 177 n n 
C13 H132 B7G sing 178 n n 
C13 H133 B7G sing 179 n n 
#
_pdbx_chem_comp_identifier.comp_id            B7G 
_pdbx_chem_comp_identifier.identifier         heptyl-b-D-Glucopyranoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     5U3Y 
_atom_sites.fract_transf_matrix[1][1]    0.025355 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003352 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010533 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010506 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 B7G A 1 501 464 B7G B7G . 
D 3 7U7 A 1 502 465 7U7 LIG . 
E 4 PGO A 1 503 466 PGO PGO . 
F 4 PGO A 1 504 467 PGO PGO . 
G 5 PEG A 1 505 468 PEG PEG . 
H 5 PEG A 1 506 469 PEG PEG . 
I 2 B7G A 1 507 464 B7G B7G . 
J 3 7U7 B 1 501 465 7U7 LIG . 
K 4 PGO B 1 502 466 PGO PGO . 
L 5 PEG B 1 503 468 PEG PEG . 
M 5 PEG B 1 504 469 PEG PEG . 
N 5 PEG B 1 505 467 PEG PEG . 
O 5 PEG B 1 506 471 PEG PEG . 
P 6 HOH A 1 601 33 HOH HOH . 
P 6 HOH A 2 602 17 HOH HOH . 
P 6 HOH A 3 603 1 HOH HOH . 
P 6 HOH A 4 604 27 HOH HOH . 
P 6 HOH A 5 605 48 HOH HOH . 
P 6 HOH A 6 606 57 HOH HOH . 
P 6 HOH A 7 607 32 HOH HOH . 
P 6 HOH A 8 608 4 HOH HOH . 
P 6 HOH A 9 609 123 HOH HOH . 
P 6 HOH A 10 610 77 HOH HOH . 
P 6 HOH A 11 611 7 HOH HOH . 
P 6 HOH A 12 612 9 HOH HOH . 
P 6 HOH A 13 613 120 HOH HOH . 
P 6 HOH A 14 614 12 HOH HOH . 
P 6 HOH A 15 615 37 HOH HOH . 
P 6 HOH A 16 616 40 HOH HOH . 
P 6 HOH A 17 617 47 HOH HOH . 
P 6 HOH A 18 618 56 HOH HOH . 
P 6 HOH A 19 619 112 HOH HOH . 
P 6 HOH A 20 620 14 HOH HOH . 
P 6 HOH A 21 621 118 HOH HOH . 
P 6 HOH A 22 622 13 HOH HOH . 
P 6 HOH A 23 623 52 HOH HOH . 
P 6 HOH A 24 624 126 HOH HOH . 
P 6 HOH A 25 625 10 HOH HOH . 
P 6 HOH A 26 626 8 HOH HOH . 
P 6 HOH A 27 627 71 HOH HOH . 
P 6 HOH A 28 628 95 HOH HOH . 
P 6 HOH A 29 629 50 HOH HOH . 
P 6 HOH A 30 630 74 HOH HOH . 
P 6 HOH A 31 631 46 HOH HOH . 
P 6 HOH A 32 632 21 HOH HOH . 
P 6 HOH A 33 633 78 HOH HOH . 
P 6 HOH A 34 634 108 HOH HOH . 
P 6 HOH A 35 635 28 HOH HOH . 
P 6 HOH A 36 636 62 HOH HOH . 
P 6 HOH A 37 637 106 HOH HOH . 
P 6 HOH A 38 638 105 HOH HOH . 
P 6 HOH A 39 639 34 HOH HOH . 
P 6 HOH A 40 640 89 HOH HOH . 
P 6 HOH A 41 641 125 HOH HOH . 
P 6 HOH A 42 642 109 HOH HOH . 
P 6 HOH A 43 643 88 HOH HOH . 
P 6 HOH A 44 644 24 HOH HOH . 
P 6 HOH A 45 645 114 HOH HOH . 
P 6 HOH A 46 646 35 HOH HOH . 
P 6 HOH A 47 647 72 HOH HOH . 
P 6 HOH A 48 648 39 HOH HOH . 
P 6 HOH A 49 649 84 HOH HOH . 
P 6 HOH A 50 650 76 HOH HOH . 
P 6 HOH A 51 651 121 HOH HOH . 
P 6 HOH A 52 652 44 HOH HOH . 
P 6 HOH A 53 653 83 HOH HOH . 
P 6 HOH A 54 654 55 HOH HOH . 
P 6 HOH A 55 655 59 HOH HOH . 
P 6 HOH A 56 656 68 HOH HOH . 
P 6 HOH A 57 657 29 HOH HOH . 
P 6 HOH A 58 658 107 HOH HOH . 
P 6 HOH A 59 659 110 HOH HOH . 
Q 6 HOH B 1 601 26 HOH HOH . 
Q 6 HOH B 2 602 3 HOH HOH . 
Q 6 HOH B 3 603 119 HOH HOH . 
Q 6 HOH B 4 604 49 HOH HOH . 
Q 6 HOH B 5 605 11 HOH HOH . 
Q 6 HOH B 6 606 67 HOH HOH . 
Q 6 HOH B 7 607 122 HOH HOH . 
Q 6 HOH B 8 608 80 HOH HOH . 
Q 6 HOH B 9 609 87 HOH HOH . 
Q 6 HOH B 10 610 70 HOH HOH . 
Q 6 HOH B 11 611 82 HOH HOH . 
Q 6 HOH B 12 612 92 HOH HOH . 
Q 6 HOH B 13 613 15 HOH HOH . 
Q 6 HOH B 14 614 6 HOH HOH . 
Q 6 HOH B 15 615 91 HOH HOH . 
Q 6 HOH B 16 616 85 HOH HOH . 
Q 6 HOH B 17 617 100 HOH HOH . 
Q 6 HOH B 18 618 20 HOH HOH . 
Q 6 HOH B 19 619 73 HOH HOH . 
Q 6 HOH B 20 620 36 HOH HOH . 
Q 6 HOH B 21 621 22 HOH HOH . 
Q 6 HOH B 22 622 30 HOH HOH . 
Q 6 HOH B 23 623 53 HOH HOH . 
Q 6 HOH B 24 624 102 HOH HOH . 
Q 6 HOH B 25 625 69 HOH HOH . 
Q 6 HOH B 26 626 103 HOH HOH . 
Q 6 HOH B 27 627 116 HOH HOH . 
Q 6 HOH B 28 628 60 HOH HOH . 
Q 6 HOH B 29 629 18 HOH HOH . 
Q 6 HOH B 30 630 63 HOH HOH . 
Q 6 HOH B 31 631 101 HOH HOH . 
Q 6 HOH B 32 632 41 HOH HOH . 
Q 6 HOH B 33 633 31 HOH HOH . 
Q 6 HOH B 34 634 45 HOH HOH . 
Q 6 HOH B 35 635 99 HOH HOH . 
Q 6 HOH B 36 636 38 HOH HOH . 
Q 6 HOH B 37 637 96 HOH HOH . 
Q 6 HOH B 38 638 16 HOH HOH . 
Q 6 HOH B 39 639 117 HOH HOH . 
Q 6 HOH B 40 640 43 HOH HOH . 
Q 6 HOH B 41 641 64 HOH HOH . 
Q 6 HOH B 42 642 94 HOH HOH . 
Q 6 HOH B 43 643 90 HOH HOH . 
Q 6 HOH B 44 644 81 HOH HOH . 
Q 6 HOH B 45 645 93 HOH HOH . 
Q 6 HOH B 46 646 124 HOH HOH . 
Q 6 HOH B 47 647 115 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C5 B7G . . . C 2 -20.169 24.984 116.323 1 47.45 ? C5 B7G 501 A 1 
HETATM 2 O O5 B7G . . . C 2 -19.527 25.971 115.445 1 44.49 ? O5 B7G 501 A 1 
HETATM 3 C C1 B7G . . . C 2 -20.306 27.205 115.294 1 37.24 ? C1 B7G 501 A 1 
HETATM 4 C C2 B7G . . . C 2 -21.729 26.913 114.848 1 37.16 ? C2 B7G 501 A 1 
HETATM 5 C C3 B7G . . . C 2 -22.402 25.983 115.788 1 39.45 ? C3 B7G 501 A 1 
HETATM 6 C C4 B7G . . . C 2 -21.631 24.731 115.975 1 33.85 ? C4 B7G 501 A 1 
HETATM 7 C C6 B7G . . . C 2 -19.431 23.689 116.215 1 49.32 ? C6 B7G 501 A 1 
HETATM 8 O O1 B7G . . . C 2 -19.673 28.024 114.361 1 33.92 ? O1 B7G 501 A 1 
HETATM 9 C C7 B7G . . . C 2 -18.778 28.985 114.941 1 31.79 ? C7 B7G 501 A 1 
HETATM 10 C C8 B7G . . . C 2 -17.77 29.475 113.877 1 23.23 ? C8 B7G 501 A 1 
HETATM 11 C C9 B7G . . . C 2 -16.733 30.409 114.53 1 27.23 ? C9 B7G 501 A 1 
HETATM 12 C C10 B7G . . . C 2 -15.366 29.69 114.643 1 29.21 ? C10 B7G 501 A 1 
HETATM 13 C C11 B7G . . . C 2 -14.257 30.725 114.941 1 21.61 ? C11 B7G 501 A 1 
HETATM 14 C C12 B7G . . . C 2 -12.938 30.01 115.319 1 26.68 ? C12 B7G 501 A 1 
HETATM 15 O O2 B7G . . . C 2 -22.461 28.143 114.772 1 24.41 ? O2 B7G 501 A 1 
HETATM 16 O O3 B7G . . . C 2 -23.726 25.649 115.272 1 31.01 ? O3 B7G 501 A 1 
HETATM 17 O O4 B7G . . . C 2 -22.222 23.962 117.031 1 29.62 ? O4 B7G 501 A 1 
HETATM 18 O O6 B7G . . . C 2 -18.118 23.857 116.685 1 42.09 ? O6 B7G 501 A 1 
HETATM 19 C C13 B7G . . . C 2 -12.394 29.189 114.143 1 30.76 ? C13 B7G 501 A 1 
HETATM 20 H H5 B7G . . . C 2 -20.116 25.301 117.244 1 56.94 ? H5 B7G 501 A 1 
HETATM 21 H H1 B7G . . . C 2 -20.334 27.666 116.151 1 44.68 ? H1 B7G 501 A 1 
HETATM 22 H H2 B7G . . . C 2 -21.705 26.503 113.96 1 44.59 ? H2 B7G 501 A 1 
HETATM 23 H H3 B7G . . . C 2 -22.501 26.423 116.649 1 47.34 ? H3 B7G 501 A 1 
HETATM 24 H H4 B7G . . . C 2 -21.671 24.207 115.141 1 40.63 ? H4 B7G 501 A 1 
HETATM 25 H H61 B7G . . . C 2 -19.408 23.406 115.284 1 59.18 ? H61 B7G 501 A 1 
HETATM 26 H H62 B7G . . . C 2 -19.887 23.005 116.754 1 59.18 ? H62 B7G 501 A 1 
HETATM 27 H H71 B7G . . . C 2 -19.288 29.741 115.285 1 38.14 ? H71 B7G 501 A 1 
HETATM 28 H H72 B7G . . . C 2 -18.281 28.559 115.683 1 38.14 ? H72 B7G 501 A 1 
HETATM 29 H H81 B7G . . . C 2 -18.234 29.942 113.161 1 27.87 ? H81 B7G 501 A 1 
HETATM 30 H H82 B7G . . . C 2 -17.304 28.691 113.508 1 27.87 ? H82 B7G 501 A 1 
HETATM 31 H H91 B7G . . . C 2 -17.037 30.667 115.416 1 32.68 ? H91 B7G 501 A 1 
HETATM 32 H H92 B7G . . . C 2 -16.626 31.217 113.984 1 32.68 ? H92 B7G 501 A 1 
HETATM 33 H H101 B7G . . . C 2 -15.166 29.235 113.806 1 35.05 ? H101 B7G 501 A 1 
HETATM 34 H H102 B7G . . . C 2 -15.406 29.031 115.372 1 35.05 ? H102 B7G 501 A 1 
HETATM 35 H H111 B7G . . . C 2 -14.113 31.295 114.149 1 25.93 ? H111 B7G 501 A 1 
HETATM 36 H H112 B7G . . . C 2 -14.543 31.279 115.694 1 25.93 ? H112 B7G 501 A 1 
HETATM 37 H H121 B7G . . . C 2 -13.102 29.415 116.075 1 32.02 ? H121 B7G 501 A 1 
HETATM 38 H H122 B7G . . . C 2 -12.271 30.681 115.577 1 32.02 ? H122 B7G 501 A 1 
HETATM 39 H HO2 B7G . . . C 2 -22.978 28.139 114.037 1 29.29 ? HO2 B7G 501 A 1 
HETATM 40 H HO3 B7G . . . C 2 -24.309 26.275 115.521 1 37.22 ? HO3 B7G 501 A 1 
HETATM 41 H HO4 B7G . . . C 2 -22.59 23.219 116.691 1 35.54 ? HO4 B7G 501 A 1 
HETATM 42 H HO6 B7G . . . C 2 -17.571 23.332 116.228 1 50.51 ? HO6 B7G 501 A 1 
HETATM 43 H H131 B7G . . . C 2 -13.076 28.539 113.852 1 36.91 ? H131 B7G 501 A 1 
HETATM 44 H H132 B7G . . . C 2 -12.175 29.788 113.4 1 36.91 ? H132 B7G 501 A 1 
HETATM 45 H H133 B7G . . . C 2 -11.591 28.712 114.424 1 36.91 ? H133 B7G 501 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           361 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           45 
#