data_5U3Y # _model_server_result.job_id M4cm8UWtDQ9oHZI5eReByw _model_server_result.datetime_utc '2024-11-27 18:08:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u3y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":506}' # _entry.id 5U3Y # _exptl.entry_id 5U3Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.53 _cell.angle_gamma 90 _cell.entry_id 5U3Y _cell.length_a 39.44 _cell.length_b 94.94 _cell.length_c 96.01 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U3Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,P 1 1 B,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 347 n n C1 C2 PEG sing 348 n n C1 H11 PEG sing 349 n n C1 H12 PEG sing 350 n n O1 HO1 PEG sing 351 n n C2 O2 PEG sing 352 n n C2 H21 PEG sing 353 n n C2 H22 PEG sing 354 n n O2 C3 PEG sing 355 n n C3 C4 PEG sing 356 n n C3 H31 PEG sing 357 n n C3 H32 PEG sing 358 n n C4 O4 PEG sing 359 n n C4 H41 PEG sing 360 n n C4 H42 PEG sing 361 n n O4 HO4 PEG sing 362 n n # _atom_sites.entry_id 5U3Y _atom_sites.fract_transf_matrix[1][1] 0.025355 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003352 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010506 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B7G A 1 501 464 B7G B7G . D 3 7U7 A 1 502 465 7U7 LIG . E 4 PGO A 1 503 466 PGO PGO . F 4 PGO A 1 504 467 PGO PGO . G 5 PEG A 1 505 468 PEG PEG . H 5 PEG A 1 506 469 PEG PEG . I 2 B7G A 1 507 464 B7G B7G . J 3 7U7 B 1 501 465 7U7 LIG . K 4 PGO B 1 502 466 PGO PGO . L 5 PEG B 1 503 468 PEG PEG . M 5 PEG B 1 504 469 PEG PEG . N 5 PEG B 1 505 467 PEG PEG . O 5 PEG B 1 506 471 PEG PEG . P 6 HOH A 1 601 33 HOH HOH . P 6 HOH A 2 602 17 HOH HOH . P 6 HOH A 3 603 1 HOH HOH . P 6 HOH A 4 604 27 HOH HOH . P 6 HOH A 5 605 48 HOH HOH . P 6 HOH A 6 606 57 HOH HOH . P 6 HOH A 7 607 32 HOH HOH . P 6 HOH A 8 608 4 HOH HOH . P 6 HOH A 9 609 123 HOH HOH . P 6 HOH A 10 610 77 HOH HOH . P 6 HOH A 11 611 7 HOH HOH . P 6 HOH A 12 612 9 HOH HOH . P 6 HOH A 13 613 120 HOH HOH . P 6 HOH A 14 614 12 HOH HOH . P 6 HOH A 15 615 37 HOH HOH . P 6 HOH A 16 616 40 HOH HOH . P 6 HOH A 17 617 47 HOH HOH . P 6 HOH A 18 618 56 HOH HOH . P 6 HOH A 19 619 112 HOH HOH . P 6 HOH A 20 620 14 HOH HOH . P 6 HOH A 21 621 118 HOH HOH . P 6 HOH A 22 622 13 HOH HOH . P 6 HOH A 23 623 52 HOH HOH . P 6 HOH A 24 624 126 HOH HOH . P 6 HOH A 25 625 10 HOH HOH . P 6 HOH A 26 626 8 HOH HOH . P 6 HOH A 27 627 71 HOH HOH . P 6 HOH A 28 628 95 HOH HOH . P 6 HOH A 29 629 50 HOH HOH . P 6 HOH A 30 630 74 HOH HOH . P 6 HOH A 31 631 46 HOH HOH . P 6 HOH A 32 632 21 HOH HOH . P 6 HOH A 33 633 78 HOH HOH . P 6 HOH A 34 634 108 HOH HOH . P 6 HOH A 35 635 28 HOH HOH . P 6 HOH A 36 636 62 HOH HOH . P 6 HOH A 37 637 106 HOH HOH . P 6 HOH A 38 638 105 HOH HOH . P 6 HOH A 39 639 34 HOH HOH . P 6 HOH A 40 640 89 HOH HOH . P 6 HOH A 41 641 125 HOH HOH . P 6 HOH A 42 642 109 HOH HOH . P 6 HOH A 43 643 88 HOH HOH . P 6 HOH A 44 644 24 HOH HOH . P 6 HOH A 45 645 114 HOH HOH . P 6 HOH A 46 646 35 HOH HOH . P 6 HOH A 47 647 72 HOH HOH . P 6 HOH A 48 648 39 HOH HOH . P 6 HOH A 49 649 84 HOH HOH . P 6 HOH A 50 650 76 HOH HOH . P 6 HOH A 51 651 121 HOH HOH . P 6 HOH A 52 652 44 HOH HOH . P 6 HOH A 53 653 83 HOH HOH . P 6 HOH A 54 654 55 HOH HOH . P 6 HOH A 55 655 59 HOH HOH . P 6 HOH A 56 656 68 HOH HOH . P 6 HOH A 57 657 29 HOH HOH . P 6 HOH A 58 658 107 HOH HOH . P 6 HOH A 59 659 110 HOH HOH . Q 6 HOH B 1 601 26 HOH HOH . Q 6 HOH B 2 602 3 HOH HOH . Q 6 HOH B 3 603 119 HOH HOH . Q 6 HOH B 4 604 49 HOH HOH . Q 6 HOH B 5 605 11 HOH HOH . Q 6 HOH B 6 606 67 HOH HOH . Q 6 HOH B 7 607 122 HOH HOH . Q 6 HOH B 8 608 80 HOH HOH . Q 6 HOH B 9 609 87 HOH HOH . Q 6 HOH B 10 610 70 HOH HOH . Q 6 HOH B 11 611 82 HOH HOH . Q 6 HOH B 12 612 92 HOH HOH . Q 6 HOH B 13 613 15 HOH HOH . Q 6 HOH B 14 614 6 HOH HOH . Q 6 HOH B 15 615 91 HOH HOH . Q 6 HOH B 16 616 85 HOH HOH . Q 6 HOH B 17 617 100 HOH HOH . Q 6 HOH B 18 618 20 HOH HOH . Q 6 HOH B 19 619 73 HOH HOH . Q 6 HOH B 20 620 36 HOH HOH . Q 6 HOH B 21 621 22 HOH HOH . Q 6 HOH B 22 622 30 HOH HOH . Q 6 HOH B 23 623 53 HOH HOH . Q 6 HOH B 24 624 102 HOH HOH . Q 6 HOH B 25 625 69 HOH HOH . Q 6 HOH B 26 626 103 HOH HOH . Q 6 HOH B 27 627 116 HOH HOH . Q 6 HOH B 28 628 60 HOH HOH . Q 6 HOH B 29 629 18 HOH HOH . Q 6 HOH B 30 630 63 HOH HOH . Q 6 HOH B 31 631 101 HOH HOH . Q 6 HOH B 32 632 41 HOH HOH . Q 6 HOH B 33 633 31 HOH HOH . Q 6 HOH B 34 634 45 HOH HOH . Q 6 HOH B 35 635 99 HOH HOH . Q 6 HOH B 36 636 38 HOH HOH . Q 6 HOH B 37 637 96 HOH HOH . Q 6 HOH B 38 638 16 HOH HOH . Q 6 HOH B 39 639 117 HOH HOH . Q 6 HOH B 40 640 43 HOH HOH . Q 6 HOH B 41 641 64 HOH HOH . Q 6 HOH B 42 642 94 HOH HOH . Q 6 HOH B 43 643 90 HOH HOH . Q 6 HOH B 44 644 81 HOH HOH . Q 6 HOH B 45 645 93 HOH HOH . Q 6 HOH B 46 646 124 HOH HOH . Q 6 HOH B 47 647 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . H 5 -29.023 17.714 135.937 1 74.52 ? C1 PEG 506 A 1 HETATM 2 O O1 PEG . . . H 5 -28.366 17.458 134.711 1 43.49 ? O1 PEG 506 A 1 HETATM 3 C C2 PEG . . . H 5 -28.127 18.589 136.821 1 99.04 ? C2 PEG 506 A 1 HETATM 4 O O2 PEG . . . H 5 -26.909 18.847 136.14 1 108.54 ? O2 PEG 506 A 1 HETATM 5 C C3 PEG . . . H 5 -25.836 19.303 136.995 1 104.69 ? C3 PEG 506 A 1 HETATM 6 C C4 PEG . . . H 5 -24.922 20.12 136.217 1 80.27 ? C4 PEG 506 A 1 HETATM 7 O O4 PEG . . . H 5 -23.672 20.143 136.842 1 56.19 ? O4 PEG 506 A 1 HETATM 8 H H11 PEG . . . H 5 -29.205 16.867 136.393 1 89.43 ? H11 PEG 506 A 1 HETATM 9 H H12 PEG . . . H 5 -29.871 18.183 135.763 1 89.43 ? H12 PEG 506 A 1 HETATM 10 H HO1 PEG . . . H 5 -28.875 16.957 134.206 1 52.18 ? HO1 PEG 506 A 1 HETATM 11 H H21 PEG . . . H 5 -27.942 18.127 137.652 1 118.85 ? H21 PEG 506 A 1 HETATM 12 H H22 PEG . . . H 5 -28.579 19.431 137.01 1 118.85 ? H22 PEG 506 A 1 HETATM 13 H H31 PEG . . . H 5 -25.358 18.536 137.357 1 125.62 ? H31 PEG 506 A 1 HETATM 14 H H32 PEG . . . H 5 -26.203 19.831 137.726 1 125.62 ? H32 PEG 506 A 1 HETATM 15 H H41 PEG . . . H 5 -24.832 19.745 135.327 1 96.33 ? H41 PEG 506 A 1 HETATM 16 H H42 PEG . . . H 5 -25.266 21.017 136.154 1 96.33 ? H42 PEG 506 A 1 HETATM 17 H HO4 PEG . . . H 5 -23.288 20.866 136.671 1 67.43 ? HO4 PEG 506 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #