data_5U3Y # _model_server_result.job_id 9OgI2PGGu9_Taz9GdVTQgQ _model_server_result.datetime_utc '2024-11-14 23:34:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u3y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":507}' # _entry.id 5U3Y # _exptl.entry_id 5U3Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.342 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'heptyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.53 _cell.angle_gamma 90 _cell.entry_id 5U3Y _cell.length_a 39.44 _cell.length_b 94.94 _cell.length_c 96.01 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U3Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,P 1 1 B,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # _chem_comp.formula 'C13 H26 O6' _chem_comp.formula_weight 278.342 _chem_comp.id B7G _chem_comp.mon_nstd_flag n _chem_comp.name 'heptyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'HEPTYL-BETA-D-GLUCOPYRANOSIDE;heptyl beta-D-glucoside;heptyl D-glucoside;heptyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 O5 B7G sing 135 n n C5 C4 B7G sing 136 n n C5 C6 B7G sing 137 n n C5 H5 B7G sing 138 n n O5 C1 B7G sing 139 n n C1 C2 B7G sing 140 n n C1 O1 B7G sing 141 n n C1 H1 B7G sing 142 n n C2 C3 B7G sing 143 n n C2 O2 B7G sing 144 n n C2 H2 B7G sing 145 n n C3 C4 B7G sing 146 n n C3 O3 B7G sing 147 n n C3 H3 B7G sing 148 n n C4 O4 B7G sing 149 n n C4 H4 B7G sing 150 n n C6 O6 B7G sing 151 n n C6 H61 B7G sing 152 n n C6 H62 B7G sing 153 n n O1 C7 B7G sing 154 n n C7 C8 B7G sing 155 n n C7 H71 B7G sing 156 n n C7 H72 B7G sing 157 n n C8 C9 B7G sing 158 n n C8 H81 B7G sing 159 n n C8 H82 B7G sing 160 n n C9 C10 B7G sing 161 n n C9 H91 B7G sing 162 n n C9 H92 B7G sing 163 n n C10 C11 B7G sing 164 n n C10 H101 B7G sing 165 n n C10 H102 B7G sing 166 n n C11 C12 B7G sing 167 n n C11 H111 B7G sing 168 n n C11 H112 B7G sing 169 n n C12 C13 B7G sing 170 n n C12 H121 B7G sing 171 n n C12 H122 B7G sing 172 n n O2 HO2 B7G sing 173 n n O3 HO3 B7G sing 174 n n O4 HO4 B7G sing 175 n n O6 HO6 B7G sing 176 n n C13 H131 B7G sing 177 n n C13 H132 B7G sing 178 n n C13 H133 B7G sing 179 n n # _pdbx_chem_comp_identifier.comp_id B7G _pdbx_chem_comp_identifier.identifier heptyl-b-D-Glucopyranoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 5U3Y _atom_sites.fract_transf_matrix[1][1] 0.025355 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003352 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010506 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B7G A 1 501 464 B7G B7G . D 3 7U7 A 1 502 465 7U7 LIG . E 4 PGO A 1 503 466 PGO PGO . F 4 PGO A 1 504 467 PGO PGO . G 5 PEG A 1 505 468 PEG PEG . H 5 PEG A 1 506 469 PEG PEG . I 2 B7G A 1 507 464 B7G B7G . J 3 7U7 B 1 501 465 7U7 LIG . K 4 PGO B 1 502 466 PGO PGO . L 5 PEG B 1 503 468 PEG PEG . M 5 PEG B 1 504 469 PEG PEG . N 5 PEG B 1 505 467 PEG PEG . O 5 PEG B 1 506 471 PEG PEG . P 6 HOH A 1 601 33 HOH HOH . P 6 HOH A 2 602 17 HOH HOH . P 6 HOH A 3 603 1 HOH HOH . P 6 HOH A 4 604 27 HOH HOH . P 6 HOH A 5 605 48 HOH HOH . P 6 HOH A 6 606 57 HOH HOH . P 6 HOH A 7 607 32 HOH HOH . P 6 HOH A 8 608 4 HOH HOH . P 6 HOH A 9 609 123 HOH HOH . P 6 HOH A 10 610 77 HOH HOH . P 6 HOH A 11 611 7 HOH HOH . P 6 HOH A 12 612 9 HOH HOH . P 6 HOH A 13 613 120 HOH HOH . P 6 HOH A 14 614 12 HOH HOH . P 6 HOH A 15 615 37 HOH HOH . P 6 HOH A 16 616 40 HOH HOH . P 6 HOH A 17 617 47 HOH HOH . P 6 HOH A 18 618 56 HOH HOH . P 6 HOH A 19 619 112 HOH HOH . P 6 HOH A 20 620 14 HOH HOH . P 6 HOH A 21 621 118 HOH HOH . P 6 HOH A 22 622 13 HOH HOH . P 6 HOH A 23 623 52 HOH HOH . P 6 HOH A 24 624 126 HOH HOH . P 6 HOH A 25 625 10 HOH HOH . P 6 HOH A 26 626 8 HOH HOH . P 6 HOH A 27 627 71 HOH HOH . P 6 HOH A 28 628 95 HOH HOH . P 6 HOH A 29 629 50 HOH HOH . P 6 HOH A 30 630 74 HOH HOH . P 6 HOH A 31 631 46 HOH HOH . P 6 HOH A 32 632 21 HOH HOH . P 6 HOH A 33 633 78 HOH HOH . P 6 HOH A 34 634 108 HOH HOH . P 6 HOH A 35 635 28 HOH HOH . P 6 HOH A 36 636 62 HOH HOH . P 6 HOH A 37 637 106 HOH HOH . P 6 HOH A 38 638 105 HOH HOH . P 6 HOH A 39 639 34 HOH HOH . P 6 HOH A 40 640 89 HOH HOH . P 6 HOH A 41 641 125 HOH HOH . P 6 HOH A 42 642 109 HOH HOH . P 6 HOH A 43 643 88 HOH HOH . P 6 HOH A 44 644 24 HOH HOH . P 6 HOH A 45 645 114 HOH HOH . P 6 HOH A 46 646 35 HOH HOH . P 6 HOH A 47 647 72 HOH HOH . P 6 HOH A 48 648 39 HOH HOH . P 6 HOH A 49 649 84 HOH HOH . P 6 HOH A 50 650 76 HOH HOH . P 6 HOH A 51 651 121 HOH HOH . P 6 HOH A 52 652 44 HOH HOH . P 6 HOH A 53 653 83 HOH HOH . P 6 HOH A 54 654 55 HOH HOH . P 6 HOH A 55 655 59 HOH HOH . P 6 HOH A 56 656 68 HOH HOH . P 6 HOH A 57 657 29 HOH HOH . P 6 HOH A 58 658 107 HOH HOH . P 6 HOH A 59 659 110 HOH HOH . Q 6 HOH B 1 601 26 HOH HOH . Q 6 HOH B 2 602 3 HOH HOH . Q 6 HOH B 3 603 119 HOH HOH . Q 6 HOH B 4 604 49 HOH HOH . Q 6 HOH B 5 605 11 HOH HOH . Q 6 HOH B 6 606 67 HOH HOH . Q 6 HOH B 7 607 122 HOH HOH . Q 6 HOH B 8 608 80 HOH HOH . Q 6 HOH B 9 609 87 HOH HOH . Q 6 HOH B 10 610 70 HOH HOH . Q 6 HOH B 11 611 82 HOH HOH . Q 6 HOH B 12 612 92 HOH HOH . Q 6 HOH B 13 613 15 HOH HOH . Q 6 HOH B 14 614 6 HOH HOH . Q 6 HOH B 15 615 91 HOH HOH . Q 6 HOH B 16 616 85 HOH HOH . Q 6 HOH B 17 617 100 HOH HOH . Q 6 HOH B 18 618 20 HOH HOH . Q 6 HOH B 19 619 73 HOH HOH . Q 6 HOH B 20 620 36 HOH HOH . Q 6 HOH B 21 621 22 HOH HOH . Q 6 HOH B 22 622 30 HOH HOH . Q 6 HOH B 23 623 53 HOH HOH . Q 6 HOH B 24 624 102 HOH HOH . Q 6 HOH B 25 625 69 HOH HOH . Q 6 HOH B 26 626 103 HOH HOH . Q 6 HOH B 27 627 116 HOH HOH . Q 6 HOH B 28 628 60 HOH HOH . Q 6 HOH B 29 629 18 HOH HOH . Q 6 HOH B 30 630 63 HOH HOH . Q 6 HOH B 31 631 101 HOH HOH . Q 6 HOH B 32 632 41 HOH HOH . Q 6 HOH B 33 633 31 HOH HOH . Q 6 HOH B 34 634 45 HOH HOH . Q 6 HOH B 35 635 99 HOH HOH . Q 6 HOH B 36 636 38 HOH HOH . Q 6 HOH B 37 637 96 HOH HOH . Q 6 HOH B 38 638 16 HOH HOH . Q 6 HOH B 39 639 117 HOH HOH . Q 6 HOH B 40 640 43 HOH HOH . Q 6 HOH B 41 641 64 HOH HOH . Q 6 HOH B 42 642 94 HOH HOH . Q 6 HOH B 43 643 90 HOH HOH . Q 6 HOH B 44 644 81 HOH HOH . Q 6 HOH B 45 645 93 HOH HOH . Q 6 HOH B 46 646 124 HOH HOH . Q 6 HOH B 47 647 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 B7G . . . I 2 -20.776 24.021 120.447 1 48.02 ? C5 B7G 507 A 1 HETATM 2 O O5 B7G . . . I 2 -20.434 23.007 121.454 1 40.19 ? O5 B7G 507 A 1 HETATM 3 C C1 B7G . . . I 2 -21.211 21.775 121.277 1 32.34 ? C1 B7G 507 A 1 HETATM 4 C C2 B7G . . . I 2 -22.699 22.074 121.326 1 31.94 ? C2 B7G 507 A 1 HETATM 5 C C3 B7G . . . I 2 -23.085 23.05 120.279 1 32.56 ? C3 B7G 507 A 1 HETATM 6 C C4 B7G . . . I 2 -22.274 24.289 120.343 1 38.78 ? C4 B7G 507 A 1 HETATM 7 C C6 B7G . . . I 2 -20.096 25.307 120.793 1 51.45 ? C6 B7G 507 A 1 HETATM 8 O O1 B7G . . . I 2 -20.923 20.831 122.264 1 30.34 ? O1 B7G 507 A 1 HETATM 9 C C7 B7G . . . I 2 -19.552 20.714 122.668 1 37.51 ? C7 B7G 507 A 1 HETATM 10 C C8 B7G . . . I 2 -19.095 19.25 122.499 1 47.53 ? C8 B7G 507 A 1 HETATM 11 C C9 B7G . . . I 2 -17.939 18.91 123.46 1 55.03 ? C9 B7G 507 A 1 HETATM 12 C C10 B7G . . . I 2 -16.567 19.246 122.828 1 56.01 ? C10 B7G 507 A 1 HETATM 13 C C11 B7G . . . I 2 -15.491 18.325 123.453 1 29.12 ? C11 B7G 507 A 1 HETATM 14 C C12 B7G . . . I 2 -14.081 18.93 123.283 1 34.23 ? C12 B7G 507 A 1 HETATM 15 O O2 B7G . . . I 2 -23.428 20.855 121.146 1 30.09 ? O2 B7G 507 A 1 HETATM 16 O O3 B7G . . . I 2 -24.49 23.403 120.45 1 27.19 ? O3 B7G 507 A 1 HETATM 17 O O4 B7G . . . I 2 -22.52 25.063 119.161 1 28.04 ? O4 B7G 507 A 1 HETATM 18 O O6 B7G . . . I 2 -18.795 25.301 120.266 1 44.96 ? O6 B7G 507 A 1 HETATM 19 C C13 B7G . . . I 2 -13.862 20.039 124.32 1 43.17 ? C13 B7G 507 A 1 HETATM 20 H H5 B7G . . . I 2 -20.452 23.72 119.578 1 57.62 ? H5 B7G 507 A 1 HETATM 21 H H1 B7G . . . I 2 -20.997 21.393 120.407 1 38.8 ? H1 B7G 507 A 1 HETATM 22 H H2 B7G . . . I 2 -22.919 22.448 122.202 1 38.33 ? H2 B7G 507 A 1 HETATM 23 H H3 B7G . . . I 2 -22.966 22.64 119.406 1 39.07 ? H3 B7G 507 A 1 HETATM 24 H H4 B7G . . . I 2 -22.558 24.812 121.129 1 46.54 ? H4 B7G 507 A 1 HETATM 25 H H61 B7G . . . I 2 -20.054 25.402 121.76 1 61.73 ? H61 B7G 507 A 1 HETATM 26 H H62 B7G . . . I 2 -20.602 26.058 120.41 1 61.73 ? H62 B7G 507 A 1 HETATM 27 H H71 B7G . . . I 2 -18.994 21.296 122.12 1 45.02 ? H71 B7G 507 A 1 HETATM 28 H H72 B7G . . . I 2 -19.47 20.977 123.618 1 45.02 ? H72 B7G 507 A 1 HETATM 29 H H81 B7G . . . I 2 -18.788 19.131 121.583 1 57.04 ? H81 B7G 507 A 1 HETATM 30 H H82 B7G . . . I 2 -19.848 18.641 122.669 1 57.04 ? H82 B7G 507 A 1 HETATM 31 H H91 B7G . . . I 2 -18.046 19.405 124.289 1 66.04 ? H91 B7G 507 A 1 HETATM 32 H H92 B7G . . . I 2 -17.967 17.949 123.654 1 66.04 ? H92 B7G 507 A 1 HETATM 33 H H101 B7G . . . I 2 -16.602 19.089 121.868 1 67.21 ? H101 B7G 507 A 1 HETATM 34 H H102 B7G . . . I 2 -16.338 20.187 122.992 1 67.21 ? H102 B7G 507 A 1 HETATM 35 H H111 B7G . . . I 2 -15.68 18.205 124.413 1 34.94 ? H111 B7G 507 A 1 HETATM 36 H H112 B7G . . . I 2 -15.524 17.457 123.006 1 34.94 ? H112 B7G 507 A 1 HETATM 37 H H121 B7G . . . I 2 -13.412 18.232 123.415 1 41.07 ? H121 B7G 507 A 1 HETATM 38 H H122 B7G . . . I 2 -13.99 19.301 122.38 1 41.07 ? H122 B7G 507 A 1 HETATM 39 H HO2 B7G . . . I 2 -24.132 20.841 121.705 1 36.11 ? HO2 B7G 507 A 1 HETATM 40 H HO3 B7G . . . I 2 -24.998 22.838 119.984 1 32.63 ? HO3 B7G 507 A 1 HETATM 41 H HO4 B7G . . . I 2 -23.122 25.701 119.341 1 33.65 ? HO4 B7G 507 A 1 HETATM 42 H HO6 B7G . . . I 2 -18.213 25.459 120.915 1 53.95 ? HO6 B7G 507 A 1 HETATM 43 H H131 B7G . . . I 2 -14.566 20.723 124.224 1 51.81 ? H131 B7G 507 A 1 HETATM 44 H H132 B7G . . . I 2 -13.9 19.656 125.22 1 51.81 ? H132 B7G 507 A 1 HETATM 45 H H133 B7G . . . I 2 -12.989 20.45 124.177 1 51.81 ? H133 B7G 507 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 45 #