data_5U3Z # _model_server_result.job_id zXsPhzkpDvw3EDfXxsxLqQ _model_server_result.datetime_utc '2024-11-24 01:29:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u3z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 5U3Z # _exptl.entry_id 5U3Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 76.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-1,2-PROPANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.68 _cell.angle_gamma 90 _cell.entry_id 5U3Z _cell.length_a 39.43 _cell.length_b 94.75 _cell.length_c 96.05 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U3Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,R 1 1 B,L,M,N,O,P,Q,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N ? 3 I N N ? 3 K N N ? 3 P N N # _chem_comp.formula 'C3 H8 O2' _chem_comp.formula_weight 76.094 _chem_comp.id PGO _chem_comp.mon_nstd_flag . _chem_comp.name S-1,2-PROPANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PGO sing 363 n n C1 O1 PGO sing 364 n n C1 H11 PGO sing 365 n n C1 H12 PGO sing 366 n n C2 C3 PGO sing 367 n n C2 O2 PGO sing 368 n n C2 H2 PGO sing 369 n n C3 H31 PGO sing 370 n n C3 H32 PGO sing 371 n n C3 H33 PGO sing 372 n n O1 HO1 PGO sing 373 n n O2 HO2 PGO sing 374 n n # _atom_sites.entry_id 5U3Z _atom_sites.fract_transf_matrix[1][1] 0.025361 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00342 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 7UA A 1 501 443 7UA LIG . D 3 PGO A 1 502 444 PGO PGO . E 4 PEG A 1 503 445 PEG PEG . F 3 PGO A 1 504 446 PGO PGO . G 5 B7G A 1 505 447 B7G B7G . H 4 PEG A 1 506 448 PEG PEG . I 3 PGO A 1 507 449 PGO PGO . J 5 B7G A 1 508 442 B7G B7G . K 3 PGO A 1 509 450 PGO PGO . L 5 B7G B 1 501 442 B7G B7G . M 2 7UA B 1 502 443 7UA LIG . N 4 PEG B 1 503 444 PEG PEG . O 4 PEG B 1 504 445 PEG PEG . P 3 PGO B 1 505 446 PGO PGO . Q 4 PEG B 1 506 449 PEG PEG . R 6 HOH A 1 601 119 HOH HOH . R 6 HOH A 2 602 54 HOH HOH . R 6 HOH A 3 603 299 HOH HOH . R 6 HOH A 4 604 70 HOH HOH . R 6 HOH A 5 605 342 HOH HOH . R 6 HOH A 6 606 110 HOH HOH . R 6 HOH A 7 607 200 HOH HOH . R 6 HOH A 8 608 150 HOH HOH . R 6 HOH A 9 609 271 HOH HOH . R 6 HOH A 10 610 38 HOH HOH . R 6 HOH A 11 611 220 HOH HOH . R 6 HOH A 12 612 303 HOH HOH . R 6 HOH A 13 613 104 HOH HOH . R 6 HOH A 14 614 1 HOH HOH . R 6 HOH A 15 615 152 HOH HOH . R 6 HOH A 16 616 139 HOH HOH . R 6 HOH A 17 617 88 HOH HOH . R 6 HOH A 18 618 23 HOH HOH . R 6 HOH A 19 619 162 HOH HOH . R 6 HOH A 20 620 172 HOH HOH . R 6 HOH A 21 621 92 HOH HOH . R 6 HOH A 22 622 26 HOH HOH . R 6 HOH A 23 623 4 HOH HOH . R 6 HOH A 24 624 202 HOH HOH . R 6 HOH A 25 625 64 HOH HOH . R 6 HOH A 26 626 22 HOH HOH . R 6 HOH A 27 627 67 HOH HOH . R 6 HOH A 28 628 131 HOH HOH . R 6 HOH A 29 629 74 HOH HOH . R 6 HOH A 30 630 12 HOH HOH . R 6 HOH A 31 631 194 HOH HOH . R 6 HOH A 32 632 60 HOH HOH . R 6 HOH A 33 633 33 HOH HOH . R 6 HOH A 34 634 44 HOH HOH . R 6 HOH A 35 635 334 HOH HOH . R 6 HOH A 36 636 144 HOH HOH . R 6 HOH A 37 637 19 HOH HOH . R 6 HOH A 38 638 59 HOH HOH . R 6 HOH A 39 639 79 HOH HOH . R 6 HOH A 40 640 6 HOH HOH . R 6 HOH A 41 641 331 HOH HOH . R 6 HOH A 42 642 27 HOH HOH . R 6 HOH A 43 643 302 HOH HOH . R 6 HOH A 44 644 10 HOH HOH . R 6 HOH A 45 645 81 HOH HOH . R 6 HOH A 46 646 71 HOH HOH . R 6 HOH A 47 647 107 HOH HOH . R 6 HOH A 48 648 304 HOH HOH . R 6 HOH A 49 649 306 HOH HOH . R 6 HOH A 50 650 2 HOH HOH . R 6 HOH A 51 651 195 HOH HOH . R 6 HOH A 52 652 78 HOH HOH . R 6 HOH A 53 653 123 HOH HOH . R 6 HOH A 54 654 240 HOH HOH . R 6 HOH A 55 655 116 HOH HOH . R 6 HOH A 56 656 49 HOH HOH . R 6 HOH A 57 657 187 HOH HOH . R 6 HOH A 58 658 274 HOH HOH . R 6 HOH A 59 659 199 HOH HOH . R 6 HOH A 60 660 203 HOH HOH . R 6 HOH A 61 661 316 HOH HOH . R 6 HOH A 62 662 143 HOH HOH . R 6 HOH A 63 663 9 HOH HOH . R 6 HOH A 64 664 11 HOH HOH . R 6 HOH A 65 665 61 HOH HOH . R 6 HOH A 66 666 13 HOH HOH . R 6 HOH A 67 667 35 HOH HOH . R 6 HOH A 68 668 42 HOH HOH . R 6 HOH A 69 669 18 HOH HOH . R 6 HOH A 70 670 91 HOH HOH . R 6 HOH A 71 671 147 HOH HOH . R 6 HOH A 72 672 225 HOH HOH . R 6 HOH A 73 673 73 HOH HOH . R 6 HOH A 74 674 237 HOH HOH . R 6 HOH A 75 675 163 HOH HOH . R 6 HOH A 76 676 112 HOH HOH . R 6 HOH A 77 677 317 HOH HOH . R 6 HOH A 78 678 329 HOH HOH . R 6 HOH A 79 679 242 HOH HOH . R 6 HOH A 80 680 177 HOH HOH . R 6 HOH A 81 681 36 HOH HOH . R 6 HOH A 82 682 338 HOH HOH . R 6 HOH A 83 683 101 HOH HOH . R 6 HOH A 84 684 174 HOH HOH . R 6 HOH A 85 685 30 HOH HOH . R 6 HOH A 86 686 262 HOH HOH . R 6 HOH A 87 687 216 HOH HOH . R 6 HOH A 88 688 318 HOH HOH . R 6 HOH A 89 689 50 HOH HOH . R 6 HOH A 90 690 47 HOH HOH . R 6 HOH A 91 691 311 HOH HOH . R 6 HOH A 92 692 313 HOH HOH . R 6 HOH A 93 693 25 HOH HOH . R 6 HOH A 94 694 178 HOH HOH . R 6 HOH A 95 695 102 HOH HOH . R 6 HOH A 96 696 323 HOH HOH . R 6 HOH A 97 697 117 HOH HOH . R 6 HOH A 98 698 320 HOH HOH . R 6 HOH A 99 699 98 HOH HOH . R 6 HOH A 100 700 132 HOH HOH . R 6 HOH A 101 701 281 HOH HOH . R 6 HOH A 102 702 37 HOH HOH . R 6 HOH A 103 703 167 HOH HOH . R 6 HOH A 104 704 106 HOH HOH . R 6 HOH A 105 705 291 HOH HOH . R 6 HOH A 106 706 343 HOH HOH . R 6 HOH A 107 707 193 HOH HOH . R 6 HOH A 108 708 20 HOH HOH . R 6 HOH A 109 709 122 HOH HOH . R 6 HOH A 110 710 246 HOH HOH . R 6 HOH A 111 711 8 HOH HOH . R 6 HOH A 112 712 256 HOH HOH . R 6 HOH A 113 713 336 HOH HOH . R 6 HOH A 114 714 248 HOH HOH . R 6 HOH A 115 715 314 HOH HOH . R 6 HOH A 116 716 236 HOH HOH . R 6 HOH A 117 717 184 HOH HOH . R 6 HOH A 118 718 207 HOH HOH . R 6 HOH A 119 719 276 HOH HOH . R 6 HOH A 120 720 161 HOH HOH . R 6 HOH A 121 721 341 HOH HOH . S 6 HOH B 1 601 210 HOH HOH . S 6 HOH B 2 602 118 HOH HOH . S 6 HOH B 3 603 140 HOH HOH . S 6 HOH B 4 604 192 HOH HOH . S 6 HOH B 5 605 287 HOH HOH . S 6 HOH B 6 606 209 HOH HOH . S 6 HOH B 7 607 120 HOH HOH . S 6 HOH B 8 608 43 HOH HOH . S 6 HOH B 9 609 103 HOH HOH . S 6 HOH B 10 610 84 HOH HOH . S 6 HOH B 11 611 231 HOH HOH . S 6 HOH B 12 612 190 HOH HOH . S 6 HOH B 13 613 86 HOH HOH . S 6 HOH B 14 614 14 HOH HOH . S 6 HOH B 15 615 5 HOH HOH . S 6 HOH B 16 616 179 HOH HOH . S 6 HOH B 17 617 40 HOH HOH . S 6 HOH B 18 618 173 HOH HOH . S 6 HOH B 19 619 121 HOH HOH . S 6 HOH B 20 620 346 HOH HOH . S 6 HOH B 21 621 294 HOH HOH . S 6 HOH B 22 622 76 HOH HOH . S 6 HOH B 23 623 31 HOH HOH . S 6 HOH B 24 624 135 HOH HOH . S 6 HOH B 25 625 95 HOH HOH . S 6 HOH B 26 626 156 HOH HOH . S 6 HOH B 27 627 3 HOH HOH . S 6 HOH B 28 628 32 HOH HOH . S 6 HOH B 29 629 305 HOH HOH . S 6 HOH B 30 630 66 HOH HOH . S 6 HOH B 31 631 286 HOH HOH . S 6 HOH B 32 632 90 HOH HOH . S 6 HOH B 33 633 337 HOH HOH . S 6 HOH B 34 634 17 HOH HOH . S 6 HOH B 35 635 114 HOH HOH . S 6 HOH B 36 636 233 HOH HOH . S 6 HOH B 37 637 16 HOH HOH . S 6 HOH B 38 638 87 HOH HOH . S 6 HOH B 39 639 148 HOH HOH . S 6 HOH B 40 640 141 HOH HOH . S 6 HOH B 41 641 48 HOH HOH . S 6 HOH B 42 642 53 HOH HOH . S 6 HOH B 43 643 85 HOH HOH . S 6 HOH B 44 644 29 HOH HOH . S 6 HOH B 45 645 45 HOH HOH . S 6 HOH B 46 646 270 HOH HOH . S 6 HOH B 47 647 142 HOH HOH . S 6 HOH B 48 648 39 HOH HOH . S 6 HOH B 49 649 159 HOH HOH . S 6 HOH B 50 650 52 HOH HOH . S 6 HOH B 51 651 24 HOH HOH . S 6 HOH B 52 652 7 HOH HOH . S 6 HOH B 53 653 100 HOH HOH . S 6 HOH B 54 654 56 HOH HOH . S 6 HOH B 55 655 126 HOH HOH . S 6 HOH B 56 656 158 HOH HOH . S 6 HOH B 57 657 75 HOH HOH . S 6 HOH B 58 658 65 HOH HOH . S 6 HOH B 59 659 133 HOH HOH . S 6 HOH B 60 660 113 HOH HOH . S 6 HOH B 61 661 125 HOH HOH . S 6 HOH B 62 662 72 HOH HOH . S 6 HOH B 63 663 77 HOH HOH . S 6 HOH B 64 664 63 HOH HOH . S 6 HOH B 65 665 21 HOH HOH . S 6 HOH B 66 666 153 HOH HOH . S 6 HOH B 67 667 244 HOH HOH . S 6 HOH B 68 668 94 HOH HOH . S 6 HOH B 69 669 279 HOH HOH . S 6 HOH B 70 670 99 HOH HOH . S 6 HOH B 71 671 266 HOH HOH . S 6 HOH B 72 672 108 HOH HOH . S 6 HOH B 73 673 272 HOH HOH . S 6 HOH B 74 674 205 HOH HOH . S 6 HOH B 75 675 96 HOH HOH . S 6 HOH B 76 676 308 HOH HOH . S 6 HOH B 77 677 322 HOH HOH . S 6 HOH B 78 678 224 HOH HOH . S 6 HOH B 79 679 164 HOH HOH . S 6 HOH B 80 680 221 HOH HOH . S 6 HOH B 81 681 188 HOH HOH . S 6 HOH B 82 682 315 HOH HOH . S 6 HOH B 83 683 115 HOH HOH . S 6 HOH B 84 684 34 HOH HOH . S 6 HOH B 85 685 154 HOH HOH . S 6 HOH B 86 686 301 HOH HOH . S 6 HOH B 87 687 290 HOH HOH . S 6 HOH B 88 688 83 HOH HOH . S 6 HOH B 89 689 335 HOH HOH . S 6 HOH B 90 690 239 HOH HOH . S 6 HOH B 91 691 196 HOH HOH . S 6 HOH B 92 692 41 HOH HOH . S 6 HOH B 93 693 345 HOH HOH . S 6 HOH B 94 694 183 HOH HOH . S 6 HOH B 95 695 278 HOH HOH . S 6 HOH B 96 696 250 HOH HOH . S 6 HOH B 97 697 176 HOH HOH . S 6 HOH B 98 698 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGO . . . D 3 -23.633 6.103 120.345 1 53.81 ? C1 PGO 502 A 1 HETATM 2 C C2 PGO . . . D 3 -24.53 7.265 120.596 1 48.92 ? C2 PGO 502 A 1 HETATM 3 C C3 PGO . . . D 3 -24.006 8.456 119.822 1 53.62 ? C3 PGO 502 A 1 HETATM 4 O O1 PGO . . . D 3 -22.849 6.426 119.223 1 57.98 ? O1 PGO 502 A 1 HETATM 5 O O2 PGO . . . D 3 -24.449 7.562 121.949 1 62.63 ? O2 PGO 502 A 1 HETATM 6 H H11 PGO . . . D 3 -23.059 5.952 121.12 1 64.57 ? H11 PGO 502 A 1 HETATM 7 H H12 PGO . . . D 3 -24.164 5.305 120.163 1 64.57 ? H12 PGO 502 A 1 HETATM 8 H H2 PGO . . . D 3 -25.449 7.058 120.339 1 58.71 ? H2 PGO 502 A 1 HETATM 9 H H31 PGO . . . D 3 -24.127 8.302 118.866 1 64.34 ? H31 PGO 502 A 1 HETATM 10 H H32 PGO . . . D 3 -23.057 8.578 120.014 1 64.34 ? H32 PGO 502 A 1 HETATM 11 H H33 PGO . . . D 3 -24.497 9.257 120.087 1 64.34 ? H33 PGO 502 A 1 HETATM 12 H HO1 PGO . . . D 3 -22.195 5.831 119.137 1 69.58 ? HO1 PGO 502 A 1 HETATM 13 H HO2 PGO . . . D 3 -24.819 8.354 122.101 1 75.15 ? HO2 PGO 502 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #