data_5U40 # _model_server_result.job_id c_vHYjRMYeLDSNa6QIm75g _model_server_result.datetime_utc '2024-11-23 16:43:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u40 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 5U40 # _exptl.entry_id 5U40 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.11 _cell.angle_gamma 90 _cell.entry_id 5U40 _cell.length_a 39.34 _cell.length_b 94.75 _cell.length_c 95.79 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U40 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,P 1 1 B,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 H N N ? 3 L N N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 353 n n C1 C2 PEG sing 354 n n C1 H11 PEG sing 355 n n C1 H12 PEG sing 356 n n O1 HO1 PEG sing 357 n n C2 O2 PEG sing 358 n n C2 H21 PEG sing 359 n n C2 H22 PEG sing 360 n n O2 C3 PEG sing 361 n n C3 C4 PEG sing 362 n n C3 H31 PEG sing 363 n n C3 H32 PEG sing 364 n n C4 O4 PEG sing 365 n n C4 H41 PEG sing 366 n n C4 H42 PEG sing 367 n n O4 HO4 PEG sing 368 n n # _atom_sites.entry_id 5U40 _atom_sites.fract_transf_matrix[1][1] 0.025419 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003171 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 7UD A 1 501 443 7UD LIG . D 3 PEG A 1 502 444 PEG PEG . E 3 PEG A 1 503 445 PEG PEG . F 4 PGO A 1 504 446 PGO PGO . G 4 PGO A 1 505 449 PGO PGO . H 3 PEG A 1 506 450 PEG PEG . I 5 B7G A 1 507 442 B7G B7G . J 5 B7G B 1 501 442 B7G B7G . K 2 7UD B 1 502 443 7UD LIG . L 3 PEG B 1 503 444 PEG PEG . M 4 PGO B 1 504 445 PGO PGO . N 4 PGO B 1 505 446 PGO PGO . O 4 PGO B 1 506 447 PGO PGO . P 6 HOH A 1 601 132 HOH HOH . P 6 HOH A 2 602 268 HOH HOH . P 6 HOH A 3 603 57 HOH HOH . P 6 HOH A 4 604 14 HOH HOH . P 6 HOH A 5 605 285 HOH HOH . P 6 HOH A 6 606 2 HOH HOH . P 6 HOH A 7 607 130 HOH HOH . P 6 HOH A 8 608 286 HOH HOH . P 6 HOH A 9 609 27 HOH HOH . P 6 HOH A 10 610 24 HOH HOH . P 6 HOH A 11 611 168 HOH HOH . P 6 HOH A 12 612 30 HOH HOH . P 6 HOH A 13 613 65 HOH HOH . P 6 HOH A 14 614 4 HOH HOH . P 6 HOH A 15 615 297 HOH HOH . P 6 HOH A 16 616 140 HOH HOH . P 6 HOH A 17 617 121 HOH HOH . P 6 HOH A 18 618 136 HOH HOH . P 6 HOH A 19 619 10 HOH HOH . P 6 HOH A 20 620 104 HOH HOH . P 6 HOH A 21 621 19 HOH HOH . P 6 HOH A 22 622 66 HOH HOH . P 6 HOH A 23 623 68 HOH HOH . P 6 HOH A 24 624 29 HOH HOH . P 6 HOH A 25 625 56 HOH HOH . P 6 HOH A 26 626 82 HOH HOH . P 6 HOH A 27 627 43 HOH HOH . P 6 HOH A 28 628 211 HOH HOH . P 6 HOH A 29 629 238 HOH HOH . P 6 HOH A 30 630 7 HOH HOH . P 6 HOH A 31 631 124 HOH HOH . P 6 HOH A 32 632 191 HOH HOH . P 6 HOH A 33 633 73 HOH HOH . P 6 HOH A 34 634 197 HOH HOH . P 6 HOH A 35 635 36 HOH HOH . P 6 HOH A 36 636 77 HOH HOH . P 6 HOH A 37 637 97 HOH HOH . P 6 HOH A 38 638 80 HOH HOH . P 6 HOH A 39 639 45 HOH HOH . P 6 HOH A 40 640 209 HOH HOH . P 6 HOH A 41 641 81 HOH HOH . P 6 HOH A 42 642 149 HOH HOH . P 6 HOH A 43 643 165 HOH HOH . P 6 HOH A 44 644 16 HOH HOH . P 6 HOH A 45 645 84 HOH HOH . P 6 HOH A 46 646 271 HOH HOH . P 6 HOH A 47 647 134 HOH HOH . P 6 HOH A 48 648 128 HOH HOH . P 6 HOH A 49 649 302 HOH HOH . P 6 HOH A 50 650 44 HOH HOH . P 6 HOH A 51 651 290 HOH HOH . P 6 HOH A 52 652 158 HOH HOH . P 6 HOH A 53 653 155 HOH HOH . P 6 HOH A 54 654 141 HOH HOH . P 6 HOH A 55 655 88 HOH HOH . P 6 HOH A 56 656 120 HOH HOH . P 6 HOH A 57 657 87 HOH HOH . P 6 HOH A 58 658 23 HOH HOH . P 6 HOH A 59 659 101 HOH HOH . P 6 HOH A 60 660 76 HOH HOH . P 6 HOH A 61 661 53 HOH HOH . P 6 HOH A 62 662 99 HOH HOH . P 6 HOH A 63 663 291 HOH HOH . P 6 HOH A 64 664 111 HOH HOH . P 6 HOH A 65 665 306 HOH HOH . P 6 HOH A 66 666 133 HOH HOH . P 6 HOH A 67 667 85 HOH HOH . P 6 HOH A 68 668 154 HOH HOH . P 6 HOH A 69 669 55 HOH HOH . P 6 HOH A 70 670 90 HOH HOH . P 6 HOH A 71 671 38 HOH HOH . P 6 HOH A 72 672 63 HOH HOH . P 6 HOH A 73 673 69 HOH HOH . P 6 HOH A 74 674 92 HOH HOH . P 6 HOH A 75 675 5 HOH HOH . P 6 HOH A 76 676 260 HOH HOH . P 6 HOH A 77 677 276 HOH HOH . P 6 HOH A 78 678 261 HOH HOH . P 6 HOH A 79 679 105 HOH HOH . P 6 HOH A 80 680 292 HOH HOH . P 6 HOH A 81 681 102 HOH HOH . P 6 HOH A 82 682 278 HOH HOH . P 6 HOH A 83 683 175 HOH HOH . P 6 HOH A 84 684 214 HOH HOH . P 6 HOH A 85 685 138 HOH HOH . P 6 HOH A 86 686 284 HOH HOH . P 6 HOH A 87 687 205 HOH HOH . P 6 HOH A 88 688 201 HOH HOH . Q 6 HOH B 1 601 50 HOH HOH . Q 6 HOH B 2 602 163 HOH HOH . Q 6 HOH B 3 603 248 HOH HOH . Q 6 HOH B 4 604 13 HOH HOH . Q 6 HOH B 5 605 8 HOH HOH . Q 6 HOH B 6 606 184 HOH HOH . Q 6 HOH B 7 607 256 HOH HOH . Q 6 HOH B 8 608 25 HOH HOH . Q 6 HOH B 9 609 40 HOH HOH . Q 6 HOH B 10 610 86 HOH HOH . Q 6 HOH B 11 611 47 HOH HOH . Q 6 HOH B 12 612 272 HOH HOH . Q 6 HOH B 13 613 112 HOH HOH . Q 6 HOH B 14 614 1 HOH HOH . Q 6 HOH B 15 615 119 HOH HOH . Q 6 HOH B 16 616 46 HOH HOH . Q 6 HOH B 17 617 296 HOH HOH . Q 6 HOH B 18 618 110 HOH HOH . Q 6 HOH B 19 619 12 HOH HOH . Q 6 HOH B 20 620 6 HOH HOH . Q 6 HOH B 21 621 64 HOH HOH . Q 6 HOH B 22 622 139 HOH HOH . Q 6 HOH B 23 623 94 HOH HOH . Q 6 HOH B 24 624 196 HOH HOH . Q 6 HOH B 25 625 150 HOH HOH . Q 6 HOH B 26 626 74 HOH HOH . Q 6 HOH B 27 627 250 HOH HOH . Q 6 HOH B 28 628 62 HOH HOH . Q 6 HOH B 29 629 32 HOH HOH . Q 6 HOH B 30 630 157 HOH HOH . Q 6 HOH B 31 631 189 HOH HOH . Q 6 HOH B 32 632 18 HOH HOH . Q 6 HOH B 33 633 114 HOH HOH . Q 6 HOH B 34 634 28 HOH HOH . Q 6 HOH B 35 635 269 HOH HOH . Q 6 HOH B 36 636 229 HOH HOH . Q 6 HOH B 37 637 15 HOH HOH . Q 6 HOH B 38 638 31 HOH HOH . Q 6 HOH B 39 639 9 HOH HOH . Q 6 HOH B 40 640 116 HOH HOH . Q 6 HOH B 41 641 122 HOH HOH . Q 6 HOH B 42 642 48 HOH HOH . Q 6 HOH B 43 643 207 HOH HOH . Q 6 HOH B 44 644 108 HOH HOH . Q 6 HOH B 45 645 169 HOH HOH . Q 6 HOH B 46 646 72 HOH HOH . Q 6 HOH B 47 647 299 HOH HOH . Q 6 HOH B 48 648 34 HOH HOH . Q 6 HOH B 49 649 143 HOH HOH . Q 6 HOH B 50 650 60 HOH HOH . Q 6 HOH B 51 651 159 HOH HOH . Q 6 HOH B 52 652 145 HOH HOH . Q 6 HOH B 53 653 123 HOH HOH . Q 6 HOH B 54 654 227 HOH HOH . Q 6 HOH B 55 655 198 HOH HOH . Q 6 HOH B 56 656 287 HOH HOH . Q 6 HOH B 57 657 279 HOH HOH . Q 6 HOH B 58 658 41 HOH HOH . Q 6 HOH B 59 659 26 HOH HOH . Q 6 HOH B 60 660 305 HOH HOH . Q 6 HOH B 61 661 61 HOH HOH . Q 6 HOH B 62 662 91 HOH HOH . Q 6 HOH B 63 663 52 HOH HOH . Q 6 HOH B 64 664 241 HOH HOH . Q 6 HOH B 65 665 79 HOH HOH . Q 6 HOH B 66 666 226 HOH HOH . Q 6 HOH B 67 667 42 HOH HOH . Q 6 HOH B 68 668 303 HOH HOH . Q 6 HOH B 69 669 21 HOH HOH . Q 6 HOH B 70 670 240 HOH HOH . Q 6 HOH B 71 671 147 HOH HOH . Q 6 HOH B 72 672 113 HOH HOH . Q 6 HOH B 73 673 51 HOH HOH . Q 6 HOH B 74 674 178 HOH HOH . Q 6 HOH B 75 675 126 HOH HOH . Q 6 HOH B 76 676 213 HOH HOH . Q 6 HOH B 77 677 293 HOH HOH . Q 6 HOH B 78 678 3 HOH HOH . Q 6 HOH B 79 679 223 HOH HOH . Q 6 HOH B 80 680 188 HOH HOH . Q 6 HOH B 81 681 283 HOH HOH . Q 6 HOH B 82 682 228 HOH HOH . Q 6 HOH B 83 683 216 HOH HOH . Q 6 HOH B 84 684 182 HOH HOH . Q 6 HOH B 85 685 100 HOH HOH . Q 6 HOH B 86 686 172 HOH HOH . Q 6 HOH B 87 687 54 HOH HOH . Q 6 HOH B 88 688 183 HOH HOH . Q 6 HOH B 89 689 173 HOH HOH . Q 6 HOH B 90 690 115 HOH HOH . Q 6 HOH B 91 691 186 HOH HOH . Q 6 HOH B 92 692 217 HOH HOH . Q 6 HOH B 93 693 146 HOH HOH . Q 6 HOH B 94 694 215 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . A . D 3 41.284 2.762 206.042 0.47 36.09 ? C1 PEG 502 A 1 HETATM 2 C C1 PEG . B . D 3 41.815 1.429 204.844 0.53 38.04 ? C1 PEG 502 A 1 HETATM 3 O O1 PEG . A . D 3 42.216 1.871 206.625 0.47 35.22 ? O1 PEG 502 A 1 HETATM 4 O O1 PEG . B . D 3 42.823 0.726 204.142 0.53 35.38 ? O1 PEG 502 A 1 HETATM 5 C C2 PEG . A . D 3 40.532 2.048 204.914 0.47 39.4 ? C2 PEG 502 A 1 HETATM 6 C C2 PEG . B . D 3 40.772 1.957 203.853 0.53 40.74 ? C2 PEG 502 A 1 HETATM 7 O O2 PEG . A . D 3 39.149 1.991 205.234 0.47 39.75 ? O2 PEG 502 A 1 HETATM 8 O O2 PEG . B . D 3 39.538 2.159 204.527 0.53 42.61 ? O2 PEG 502 A 1 HETATM 9 C C3 PEG . A . D 3 38.265 2.073 204.091 0.47 41.82 ? C3 PEG 502 A 1 HETATM 10 C C3 PEG . B . D 3 38.372 2.035 203.678 0.53 41.34 ? C3 PEG 502 A 1 HETATM 11 C C4 PEG . A . D 3 36.893 2.214 204.55 0.47 40.27 ? C4 PEG 502 A 1 HETATM 12 C C4 PEG . B . D 3 37.179 2.351 204.446 0.53 40.66 ? C4 PEG 502 A 1 HETATM 13 O O4 PEG . A . D 3 36.075 2.578 203.476 0.47 40.64 ? O4 PEG 502 A 1 HETATM 14 O O4 PEG . B . D 3 36.066 2.364 203.599 0.53 40.37 ? O4 PEG 502 A 1 HETATM 15 H H11 PEG . A . D 3 41.758 3.538 205.678 0.47 43.3 ? H11 PEG 502 A 1 HETATM 16 H H11 PEG . B . D 3 41.381 0.826 205.484 0.53 45.65 ? H11 PEG 502 A 1 HETATM 17 H H12 PEG . A . D 3 40.643 3.059 206.727 0.47 43.3 ? H12 PEG 502 A 1 HETATM 18 H H12 PEG . B . D 3 42.219 2.184 205.329 0.53 45.65 ? H12 PEG 502 A 1 HETATM 19 H HO1 PEG . A . D 3 42.805 1.631 206.024 0.47 42.27 ? HO1 PEG 502 A 1 HETATM 20 H HO1 PEG . B . D 3 43.423 0.434 204.708 0.53 42.46 ? HO1 PEG 502 A 1 HETATM 21 H H21 PEG . A . D 3 40.652 2.535 204.085 0.47 47.28 ? H21 PEG 502 A 1 HETATM 22 H H21 PEG . B . D 3 40.649 1.313 203.139 0.53 48.89 ? H21 PEG 502 A 1 HETATM 23 H H22 PEG . A . D 3 40.879 1.143 204.812 0.47 47.28 ? H22 PEG 502 A 1 HETATM 24 H H22 PEG . B . D 3 41.079 2.802 203.478 0.53 48.89 ? H22 PEG 502 A 1 HETATM 25 H H31 PEG . A . D 3 38.505 2.845 203.549 0.47 50.19 ? H31 PEG 502 A 1 HETATM 26 H H31 PEG . B . D 3 38.309 1.124 203.343 0.53 49.61 ? H31 PEG 502 A 1 HETATM 27 H H32 PEG . A . D 3 38.347 1.264 203.557 0.47 50.19 ? H32 PEG 502 A 1 HETATM 28 H H32 PEG . B . D 3 38.448 2.652 202.929 0.53 49.61 ? H32 PEG 502 A 1 HETATM 29 H H41 PEG . A . D 3 36.852 2.899 205.235 0.47 48.33 ? H41 PEG 502 A 1 HETATM 30 H H41 PEG . B . D 3 37.052 1.68 205.135 0.53 48.79 ? H41 PEG 502 A 1 HETATM 31 H H42 PEG . A . D 3 36.589 1.376 204.916 0.47 48.33 ? H42 PEG 502 A 1 HETATM 32 H H42 PEG . B . D 3 37.28 3.216 204.856 0.53 48.79 ? H42 PEG 502 A 1 HETATM 33 H HO4 PEG . A . D 3 35.303 2.281 203.601 0.47 48.77 ? HO4 PEG 502 A 1 HETATM 34 H HO4 PEG . B . D 3 35.646 3.08 203.703 0.53 48.45 ? HO4 PEG 502 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 34 #