data_5U41
#
_model_server_result.job_id            y5x18k09f5bSEi164mkykA 
_model_server_result.datetime_utc      '2024-11-15 09:41:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5u41 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":505}' 
#
_entry.id    5U41 
#
_exptl.entry_id    5U41 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              76.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-1,2-PROPANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.44 
_cell.angle_gamma         90 
_cell.entry_id            5U41 
_cell.length_a            39.449 
_cell.length_b            95.124 
_cell.length_c            95.795 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5U41 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,Q 1 1 
B,K,L,M,N,O,P,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 P K K . B K 506 1_555 R O HOH . B HOH 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.131 ? 
metalc ? metalc2 P K K . B K 506 1_555 R O HOH . B HOH 670 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.017 ? 
#
_chem_comp.formula           'C3 H8 O2' 
_chem_comp.formula_weight    76.094 
_chem_comp.id                PGO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-1,2-PROPANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PGO sing 369 n n 
C1 O1 PGO sing 370 n n 
C1 H11 PGO sing 371 n n 
C1 H12 PGO sing 372 n n 
C2 C3 PGO sing 373 n n 
C2 O2 PGO sing 374 n n 
C2 H2 PGO sing 375 n n 
C3 H31 PGO sing 376 n n 
C3 H32 PGO sing 377 n n 
C3 H33 PGO sing 378 n n 
O1 HO1 PGO sing 379 n n 
O2 HO2 PGO sing 380 n n 
#
_atom_sites.entry_id                     5U41 
_atom_sites.fract_transf_matrix[1][1]    0.025349 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002863 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010513 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010505 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 7UG A 1 501 443 7UG LIG . 
D 3 PEG A 1 502 444 PEG PEG . 
E 3 PEG A 1 503 445 PEG PEG . 
F 4 PGO A 1 504 446 PGO PGO . 
G 4 PGO A 1 505 447 PGO PGO . 
H 4 PGO A 1 506 448 PGO PGO . 
I 4 PGO A 1 507 449 PGO PGO . 
J 3 PEG A 1 508 446 PEG PEG . 
K 5 B7G B 1 501 442 B7G B7G . 
L 5 B7G B 1 502 442 B7G B7G . 
M 2 7UG B 1 503 443 7UG LIG . 
N 3 PEG B 1 504 444 PEG PEG . 
O 3 PEG B 1 505 445 PEG PEG . 
P 6 K B 1 506 1 K K . 
Q 7 HOH A 1 601 297 HOH HOH . 
Q 7 HOH A 2 602 309 HOH HOH . 
Q 7 HOH A 3 603 50 HOH HOH . 
Q 7 HOH A 4 604 82 HOH HOH . 
Q 7 HOH A 5 605 306 HOH HOH . 
Q 7 HOH A 6 606 311 HOH HOH . 
Q 7 HOH A 7 607 267 HOH HOH . 
Q 7 HOH A 8 608 94 HOH HOH . 
Q 7 HOH A 9 609 170 HOH HOH . 
Q 7 HOH A 10 610 96 HOH HOH . 
Q 7 HOH A 11 611 27 HOH HOH . 
Q 7 HOH A 12 612 293 HOH HOH . 
Q 7 HOH A 13 613 111 HOH HOH . 
Q 7 HOH A 14 614 65 HOH HOH . 
Q 7 HOH A 15 615 69 HOH HOH . 
Q 7 HOH A 16 616 312 HOH HOH . 
Q 7 HOH A 17 617 165 HOH HOH . 
Q 7 HOH A 18 618 6 HOH HOH . 
Q 7 HOH A 19 619 35 HOH HOH . 
Q 7 HOH A 20 620 313 HOH HOH . 
Q 7 HOH A 21 621 83 HOH HOH . 
Q 7 HOH A 22 622 305 HOH HOH . 
Q 7 HOH A 23 623 247 HOH HOH . 
Q 7 HOH A 24 624 206 HOH HOH . 
Q 7 HOH A 25 625 37 HOH HOH . 
Q 7 HOH A 26 626 15 HOH HOH . 
Q 7 HOH A 27 627 277 HOH HOH . 
Q 7 HOH A 28 628 117 HOH HOH . 
Q 7 HOH A 29 629 42 HOH HOH . 
Q 7 HOH A 30 630 137 HOH HOH . 
Q 7 HOH A 31 631 289 HOH HOH . 
Q 7 HOH A 32 632 17 HOH HOH . 
Q 7 HOH A 33 633 191 HOH HOH . 
Q 7 HOH A 34 634 212 HOH HOH . 
Q 7 HOH A 35 635 201 HOH HOH . 
Q 7 HOH A 36 636 34 HOH HOH . 
Q 7 HOH A 37 637 51 HOH HOH . 
Q 7 HOH A 38 638 202 HOH HOH . 
Q 7 HOH A 39 639 19 HOH HOH . 
Q 7 HOH A 40 640 190 HOH HOH . 
Q 7 HOH A 41 641 145 HOH HOH . 
Q 7 HOH A 42 642 22 HOH HOH . 
Q 7 HOH A 43 643 12 HOH HOH . 
Q 7 HOH A 44 644 241 HOH HOH . 
Q 7 HOH A 45 645 18 HOH HOH . 
Q 7 HOH A 46 646 275 HOH HOH . 
Q 7 HOH A 47 647 31 HOH HOH . 
Q 7 HOH A 48 648 140 HOH HOH . 
Q 7 HOH A 49 649 134 HOH HOH . 
Q 7 HOH A 50 650 5 HOH HOH . 
Q 7 HOH A 51 651 48 HOH HOH . 
Q 7 HOH A 52 652 109 HOH HOH . 
Q 7 HOH A 53 653 214 HOH HOH . 
Q 7 HOH A 54 654 138 HOH HOH . 
Q 7 HOH A 55 655 256 HOH HOH . 
Q 7 HOH A 56 656 158 HOH HOH . 
Q 7 HOH A 57 657 295 HOH HOH . 
Q 7 HOH A 58 658 195 HOH HOH . 
Q 7 HOH A 59 659 79 HOH HOH . 
Q 7 HOH A 60 660 87 HOH HOH . 
Q 7 HOH A 61 661 97 HOH HOH . 
Q 7 HOH A 62 662 54 HOH HOH . 
Q 7 HOH A 63 663 172 HOH HOH . 
Q 7 HOH A 64 664 292 HOH HOH . 
Q 7 HOH A 65 665 218 HOH HOH . 
Q 7 HOH A 66 666 56 HOH HOH . 
Q 7 HOH A 67 667 95 HOH HOH . 
Q 7 HOH A 68 668 272 HOH HOH . 
Q 7 HOH A 69 669 25 HOH HOH . 
Q 7 HOH A 70 670 307 HOH HOH . 
Q 7 HOH A 71 671 161 HOH HOH . 
Q 7 HOH A 72 672 126 HOH HOH . 
Q 7 HOH A 73 673 142 HOH HOH . 
Q 7 HOH A 74 674 156 HOH HOH . 
Q 7 HOH A 75 675 118 HOH HOH . 
Q 7 HOH A 76 676 75 HOH HOH . 
Q 7 HOH A 77 677 92 HOH HOH . 
Q 7 HOH A 78 678 8 HOH HOH . 
Q 7 HOH A 79 679 263 HOH HOH . 
Q 7 HOH A 80 680 55 HOH HOH . 
Q 7 HOH A 81 681 122 HOH HOH . 
Q 7 HOH A 82 682 115 HOH HOH . 
Q 7 HOH A 83 683 147 HOH HOH . 
Q 7 HOH A 84 684 85 HOH HOH . 
Q 7 HOH A 85 685 192 HOH HOH . 
Q 7 HOH A 86 686 128 HOH HOH . 
Q 7 HOH A 87 687 229 HOH HOH . 
R 7 HOH B 1 601 102 HOH HOH . 
R 7 HOH B 2 602 314 HOH HOH . 
R 7 HOH B 3 603 123 HOH HOH . 
R 7 HOH B 4 604 279 HOH HOH . 
R 7 HOH B 5 605 72 HOH HOH . 
R 7 HOH B 6 606 136 HOH HOH . 
R 7 HOH B 7 607 24 HOH HOH . 
R 7 HOH B 8 608 276 HOH HOH . 
R 7 HOH B 9 609 32 HOH HOH . 
R 7 HOH B 10 610 283 HOH HOH . 
R 7 HOH B 11 611 274 HOH HOH . 
R 7 HOH B 12 612 217 HOH HOH . 
R 7 HOH B 13 613 57 HOH HOH . 
R 7 HOH B 14 614 40 HOH HOH . 
R 7 HOH B 15 615 298 HOH HOH . 
R 7 HOH B 16 616 99 HOH HOH . 
R 7 HOH B 17 617 30 HOH HOH . 
R 7 HOH B 18 618 127 HOH HOH . 
R 7 HOH B 19 619 53 HOH HOH . 
R 7 HOH B 20 620 299 HOH HOH . 
R 7 HOH B 21 621 310 HOH HOH . 
R 7 HOH B 22 622 81 HOH HOH . 
R 7 HOH B 23 623 245 HOH HOH . 
R 7 HOH B 24 624 270 HOH HOH . 
R 7 HOH B 25 625 106 HOH HOH . 
R 7 HOH B 26 626 26 HOH HOH . 
R 7 HOH B 27 627 38 HOH HOH . 
R 7 HOH B 28 628 4 HOH HOH . 
R 7 HOH B 29 629 71 HOH HOH . 
R 7 HOH B 30 630 33 HOH HOH . 
R 7 HOH B 31 631 52 HOH HOH . 
R 7 HOH B 32 632 84 HOH HOH . 
R 7 HOH B 33 633 291 HOH HOH . 
R 7 HOH B 34 634 10 HOH HOH . 
R 7 HOH B 35 635 282 HOH HOH . 
R 7 HOH B 36 636 231 HOH HOH . 
R 7 HOH B 37 637 49 HOH HOH . 
R 7 HOH B 38 638 77 HOH HOH . 
R 7 HOH B 39 639 16 HOH HOH . 
R 7 HOH B 40 640 13 HOH HOH . 
R 7 HOH B 41 641 209 HOH HOH . 
R 7 HOH B 42 642 14 HOH HOH . 
R 7 HOH B 43 643 47 HOH HOH . 
R 7 HOH B 44 644 60 HOH HOH . 
R 7 HOH B 45 645 116 HOH HOH . 
R 7 HOH B 46 646 76 HOH HOH . 
R 7 HOH B 47 647 45 HOH HOH . 
R 7 HOH B 48 648 300 HOH HOH . 
R 7 HOH B 49 649 104 HOH HOH . 
R 7 HOH B 50 650 290 HOH HOH . 
R 7 HOH B 51 651 131 HOH HOH . 
R 7 HOH B 52 652 44 HOH HOH . 
R 7 HOH B 53 653 110 HOH HOH . 
R 7 HOH B 54 654 210 HOH HOH . 
R 7 HOH B 55 655 7 HOH HOH . 
R 7 HOH B 56 656 302 HOH HOH . 
R 7 HOH B 57 657 273 HOH HOH . 
R 7 HOH B 58 658 119 HOH HOH . 
R 7 HOH B 59 659 20 HOH HOH . 
R 7 HOH B 60 660 150 HOH HOH . 
R 7 HOH B 61 661 197 HOH HOH . 
R 7 HOH B 62 662 58 HOH HOH . 
R 7 HOH B 63 663 168 HOH HOH . 
R 7 HOH B 64 664 113 HOH HOH . 
R 7 HOH B 65 665 62 HOH HOH . 
R 7 HOH B 66 666 108 HOH HOH . 
R 7 HOH B 67 667 278 HOH HOH . 
R 7 HOH B 68 668 304 HOH HOH . 
R 7 HOH B 69 669 39 HOH HOH . 
R 7 HOH B 70 670 9 HOH HOH . 
R 7 HOH B 71 671 43 HOH HOH . 
R 7 HOH B 72 672 193 HOH HOH . 
R 7 HOH B 73 673 288 HOH HOH . 
R 7 HOH B 74 674 11 HOH HOH . 
R 7 HOH B 75 675 176 HOH HOH . 
R 7 HOH B 76 676 139 HOH HOH . 
R 7 HOH B 77 677 284 HOH HOH . 
R 7 HOH B 78 678 285 HOH HOH . 
R 7 HOH B 79 679 167 HOH HOH . 
R 7 HOH B 80 680 271 HOH HOH . 
R 7 HOH B 81 681 183 HOH HOH . 
R 7 HOH B 82 682 2 HOH HOH . 
R 7 HOH B 83 683 236 HOH HOH . 
R 7 HOH B 84 684 264 HOH HOH . 
R 7 HOH B 85 685 234 HOH HOH . 
R 7 HOH B 86 686 308 HOH HOH . 
R 7 HOH B 87 687 268 HOH HOH . 
R 7 HOH B 88 688 219 HOH HOH . 
R 7 HOH B 89 689 254 HOH HOH . 
R 7 HOH B 90 690 180 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PGO . . . G 4 3.814 -12.442 231.954 1 55.17 ? C1 PGO 505 A 1 
HETATM 2 C C2 PGO . . . G 4 4.706 -11.229 232.099 1 65.19 ? C2 PGO 505 A 1 
HETATM 3 C C3 PGO . . . G 4 5.713 -11.216 230.97 1 56.46 ? C3 PGO 505 A 1 
HETATM 4 O O1 PGO . . . G 4 2.865 -12.469 232.998 1 41.08 ? O1 PGO 505 A 1 
HETATM 5 O O2 PGO . . . G 4 5.38 -11.28 233.335 1 71.18 ? O2 PGO 505 A 1 
HETATM 6 H H11 PGO . . . G 4 4.358 -13.25 231.99 1 66.2 ? H11 PGO 505 A 1 
HETATM 7 H H12 PGO . . . G 4 3.35 -12.402 231.096 1 66.2 ? H12 PGO 505 A 1 
HETATM 8 H H2 PGO . . . G 4 4.162 -10.419 232.058 1 78.22 ? H2 PGO 505 A 1 
HETATM 9 H H31 PGO . . . G 4 6.227 -12.045 230.984 1 67.75 ? H31 PGO 505 A 1 
HETATM 10 H H32 PGO . . . G 4 6.316 -10.456 231.081 1 67.75 ? H32 PGO 505 A 1 
HETATM 11 H H33 PGO . . . G 4 5.245 -11.137 230.117 1 67.75 ? H33 PGO 505 A 1 
HETATM 12 H HO1 PGO . . . G 4 2.133 -12.889 232.722 1 49.3 ? HO1 PGO 505 A 1 
HETATM 13 H HO2 PGO . . . G 4 5.003 -10.709 233.902 1 85.42 ? HO2 PGO 505 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    40 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           13 
#