data_5U41 # _model_server_result.job_id 2ev5gtoinwrRR8SlS9LvvQ _model_server_result.datetime_utc '2024-11-15 09:44:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u41 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":505}' # _entry.id 5U41 # _exptl.entry_id 5U41 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.44 _cell.angle_gamma 90 _cell.entry_id 5U41 _cell.length_a 39.449 _cell.length_b 95.124 _cell.length_c 95.795 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U41 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,Q 1 1 B,K,L,M,N,O,P,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 J N N ? 3 N N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 P K K . B K 506 1_555 R O HOH . B HOH 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.131 ? metalc ? metalc2 P K K . B K 506 1_555 R O HOH . B HOH 670 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.017 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 353 n n C1 C2 PEG sing 354 n n C1 H11 PEG sing 355 n n C1 H12 PEG sing 356 n n O1 HO1 PEG sing 357 n n C2 O2 PEG sing 358 n n C2 H21 PEG sing 359 n n C2 H22 PEG sing 360 n n O2 C3 PEG sing 361 n n C3 C4 PEG sing 362 n n C3 H31 PEG sing 363 n n C3 H32 PEG sing 364 n n C4 O4 PEG sing 365 n n C4 H41 PEG sing 366 n n C4 H42 PEG sing 367 n n O4 HO4 PEG sing 368 n n # _atom_sites.entry_id 5U41 _atom_sites.fract_transf_matrix[1][1] 0.025349 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002863 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010513 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010505 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 7UG A 1 501 443 7UG LIG . D 3 PEG A 1 502 444 PEG PEG . E 3 PEG A 1 503 445 PEG PEG . F 4 PGO A 1 504 446 PGO PGO . G 4 PGO A 1 505 447 PGO PGO . H 4 PGO A 1 506 448 PGO PGO . I 4 PGO A 1 507 449 PGO PGO . J 3 PEG A 1 508 446 PEG PEG . K 5 B7G B 1 501 442 B7G B7G . L 5 B7G B 1 502 442 B7G B7G . M 2 7UG B 1 503 443 7UG LIG . N 3 PEG B 1 504 444 PEG PEG . O 3 PEG B 1 505 445 PEG PEG . P 6 K B 1 506 1 K K . Q 7 HOH A 1 601 297 HOH HOH . Q 7 HOH A 2 602 309 HOH HOH . Q 7 HOH A 3 603 50 HOH HOH . Q 7 HOH A 4 604 82 HOH HOH . Q 7 HOH A 5 605 306 HOH HOH . Q 7 HOH A 6 606 311 HOH HOH . Q 7 HOH A 7 607 267 HOH HOH . Q 7 HOH A 8 608 94 HOH HOH . Q 7 HOH A 9 609 170 HOH HOH . Q 7 HOH A 10 610 96 HOH HOH . Q 7 HOH A 11 611 27 HOH HOH . Q 7 HOH A 12 612 293 HOH HOH . Q 7 HOH A 13 613 111 HOH HOH . Q 7 HOH A 14 614 65 HOH HOH . Q 7 HOH A 15 615 69 HOH HOH . Q 7 HOH A 16 616 312 HOH HOH . Q 7 HOH A 17 617 165 HOH HOH . Q 7 HOH A 18 618 6 HOH HOH . Q 7 HOH A 19 619 35 HOH HOH . Q 7 HOH A 20 620 313 HOH HOH . Q 7 HOH A 21 621 83 HOH HOH . Q 7 HOH A 22 622 305 HOH HOH . Q 7 HOH A 23 623 247 HOH HOH . Q 7 HOH A 24 624 206 HOH HOH . Q 7 HOH A 25 625 37 HOH HOH . Q 7 HOH A 26 626 15 HOH HOH . Q 7 HOH A 27 627 277 HOH HOH . Q 7 HOH A 28 628 117 HOH HOH . Q 7 HOH A 29 629 42 HOH HOH . Q 7 HOH A 30 630 137 HOH HOH . Q 7 HOH A 31 631 289 HOH HOH . Q 7 HOH A 32 632 17 HOH HOH . Q 7 HOH A 33 633 191 HOH HOH . Q 7 HOH A 34 634 212 HOH HOH . Q 7 HOH A 35 635 201 HOH HOH . Q 7 HOH A 36 636 34 HOH HOH . Q 7 HOH A 37 637 51 HOH HOH . Q 7 HOH A 38 638 202 HOH HOH . Q 7 HOH A 39 639 19 HOH HOH . Q 7 HOH A 40 640 190 HOH HOH . Q 7 HOH A 41 641 145 HOH HOH . Q 7 HOH A 42 642 22 HOH HOH . Q 7 HOH A 43 643 12 HOH HOH . Q 7 HOH A 44 644 241 HOH HOH . Q 7 HOH A 45 645 18 HOH HOH . Q 7 HOH A 46 646 275 HOH HOH . Q 7 HOH A 47 647 31 HOH HOH . Q 7 HOH A 48 648 140 HOH HOH . Q 7 HOH A 49 649 134 HOH HOH . Q 7 HOH A 50 650 5 HOH HOH . Q 7 HOH A 51 651 48 HOH HOH . Q 7 HOH A 52 652 109 HOH HOH . Q 7 HOH A 53 653 214 HOH HOH . Q 7 HOH A 54 654 138 HOH HOH . Q 7 HOH A 55 655 256 HOH HOH . Q 7 HOH A 56 656 158 HOH HOH . Q 7 HOH A 57 657 295 HOH HOH . Q 7 HOH A 58 658 195 HOH HOH . Q 7 HOH A 59 659 79 HOH HOH . Q 7 HOH A 60 660 87 HOH HOH . Q 7 HOH A 61 661 97 HOH HOH . Q 7 HOH A 62 662 54 HOH HOH . Q 7 HOH A 63 663 172 HOH HOH . Q 7 HOH A 64 664 292 HOH HOH . Q 7 HOH A 65 665 218 HOH HOH . Q 7 HOH A 66 666 56 HOH HOH . Q 7 HOH A 67 667 95 HOH HOH . Q 7 HOH A 68 668 272 HOH HOH . Q 7 HOH A 69 669 25 HOH HOH . Q 7 HOH A 70 670 307 HOH HOH . Q 7 HOH A 71 671 161 HOH HOH . Q 7 HOH A 72 672 126 HOH HOH . Q 7 HOH A 73 673 142 HOH HOH . Q 7 HOH A 74 674 156 HOH HOH . Q 7 HOH A 75 675 118 HOH HOH . Q 7 HOH A 76 676 75 HOH HOH . Q 7 HOH A 77 677 92 HOH HOH . Q 7 HOH A 78 678 8 HOH HOH . Q 7 HOH A 79 679 263 HOH HOH . Q 7 HOH A 80 680 55 HOH HOH . Q 7 HOH A 81 681 122 HOH HOH . Q 7 HOH A 82 682 115 HOH HOH . Q 7 HOH A 83 683 147 HOH HOH . Q 7 HOH A 84 684 85 HOH HOH . Q 7 HOH A 85 685 192 HOH HOH . Q 7 HOH A 86 686 128 HOH HOH . Q 7 HOH A 87 687 229 HOH HOH . R 7 HOH B 1 601 102 HOH HOH . R 7 HOH B 2 602 314 HOH HOH . R 7 HOH B 3 603 123 HOH HOH . R 7 HOH B 4 604 279 HOH HOH . R 7 HOH B 5 605 72 HOH HOH . R 7 HOH B 6 606 136 HOH HOH . R 7 HOH B 7 607 24 HOH HOH . R 7 HOH B 8 608 276 HOH HOH . R 7 HOH B 9 609 32 HOH HOH . R 7 HOH B 10 610 283 HOH HOH . R 7 HOH B 11 611 274 HOH HOH . R 7 HOH B 12 612 217 HOH HOH . R 7 HOH B 13 613 57 HOH HOH . R 7 HOH B 14 614 40 HOH HOH . R 7 HOH B 15 615 298 HOH HOH . R 7 HOH B 16 616 99 HOH HOH . R 7 HOH B 17 617 30 HOH HOH . R 7 HOH B 18 618 127 HOH HOH . R 7 HOH B 19 619 53 HOH HOH . R 7 HOH B 20 620 299 HOH HOH . R 7 HOH B 21 621 310 HOH HOH . R 7 HOH B 22 622 81 HOH HOH . R 7 HOH B 23 623 245 HOH HOH . R 7 HOH B 24 624 270 HOH HOH . R 7 HOH B 25 625 106 HOH HOH . R 7 HOH B 26 626 26 HOH HOH . R 7 HOH B 27 627 38 HOH HOH . R 7 HOH B 28 628 4 HOH HOH . R 7 HOH B 29 629 71 HOH HOH . R 7 HOH B 30 630 33 HOH HOH . R 7 HOH B 31 631 52 HOH HOH . R 7 HOH B 32 632 84 HOH HOH . R 7 HOH B 33 633 291 HOH HOH . R 7 HOH B 34 634 10 HOH HOH . R 7 HOH B 35 635 282 HOH HOH . R 7 HOH B 36 636 231 HOH HOH . R 7 HOH B 37 637 49 HOH HOH . R 7 HOH B 38 638 77 HOH HOH . R 7 HOH B 39 639 16 HOH HOH . R 7 HOH B 40 640 13 HOH HOH . R 7 HOH B 41 641 209 HOH HOH . R 7 HOH B 42 642 14 HOH HOH . R 7 HOH B 43 643 47 HOH HOH . R 7 HOH B 44 644 60 HOH HOH . R 7 HOH B 45 645 116 HOH HOH . R 7 HOH B 46 646 76 HOH HOH . R 7 HOH B 47 647 45 HOH HOH . R 7 HOH B 48 648 300 HOH HOH . R 7 HOH B 49 649 104 HOH HOH . R 7 HOH B 50 650 290 HOH HOH . R 7 HOH B 51 651 131 HOH HOH . R 7 HOH B 52 652 44 HOH HOH . R 7 HOH B 53 653 110 HOH HOH . R 7 HOH B 54 654 210 HOH HOH . R 7 HOH B 55 655 7 HOH HOH . R 7 HOH B 56 656 302 HOH HOH . R 7 HOH B 57 657 273 HOH HOH . R 7 HOH B 58 658 119 HOH HOH . R 7 HOH B 59 659 20 HOH HOH . R 7 HOH B 60 660 150 HOH HOH . R 7 HOH B 61 661 197 HOH HOH . R 7 HOH B 62 662 58 HOH HOH . R 7 HOH B 63 663 168 HOH HOH . R 7 HOH B 64 664 113 HOH HOH . R 7 HOH B 65 665 62 HOH HOH . R 7 HOH B 66 666 108 HOH HOH . R 7 HOH B 67 667 278 HOH HOH . R 7 HOH B 68 668 304 HOH HOH . R 7 HOH B 69 669 39 HOH HOH . R 7 HOH B 70 670 9 HOH HOH . R 7 HOH B 71 671 43 HOH HOH . R 7 HOH B 72 672 193 HOH HOH . R 7 HOH B 73 673 288 HOH HOH . R 7 HOH B 74 674 11 HOH HOH . R 7 HOH B 75 675 176 HOH HOH . R 7 HOH B 76 676 139 HOH HOH . R 7 HOH B 77 677 284 HOH HOH . R 7 HOH B 78 678 285 HOH HOH . R 7 HOH B 79 679 167 HOH HOH . R 7 HOH B 80 680 271 HOH HOH . R 7 HOH B 81 681 183 HOH HOH . R 7 HOH B 82 682 2 HOH HOH . R 7 HOH B 83 683 236 HOH HOH . R 7 HOH B 84 684 264 HOH HOH . R 7 HOH B 85 685 234 HOH HOH . R 7 HOH B 86 686 308 HOH HOH . R 7 HOH B 87 687 268 HOH HOH . R 7 HOH B 88 688 219 HOH HOH . R 7 HOH B 89 689 254 HOH HOH . R 7 HOH B 90 690 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . A . O 3 -1.015 -29.891 195.618 0.55 48.22 ? C1 PEG 505 B 1 HETATM 2 C C1 PEG . B . O 3 -2.639 -29.763 195.211 0.45 53.81 ? C1 PEG 505 B 1 HETATM 3 O O1 PEG . A . O 3 0.114 -29.156 195.186 0.55 38.69 ? O1 PEG 505 B 1 HETATM 4 O O1 PEG . B . O 3 -1.282 -29.401 195.387 0.45 49.32 ? O1 PEG 505 B 1 HETATM 5 C C2 PEG . A . O 3 -2.298 -29.194 195.145 0.55 54.01 ? C2 PEG 505 B 1 HETATM 6 C C2 PEG . B . O 3 -3.539 -28.801 195.995 0.45 54.51 ? C2 PEG 505 B 1 HETATM 7 O O2 PEG . A . O 3 -3.306 -29.316 196.14 0.55 54.89 ? O2 PEG 505 B 1 HETATM 8 O O2 PEG . B . O 3 -4.888 -29.25 195.962 0.45 50.37 ? O2 PEG 505 B 1 HETATM 9 C C3 PEG . A . O 3 -4.462 -28.468 195.933 0.55 48.37 ? C3 PEG 505 B 1 HETATM 10 C C3 PEG . B . O 3 -5.673 -28.871 197.12 0.45 41.11 ? C3 PEG 505 B 1 HETATM 11 C C4 PEG . A . O 3 -5.294 -28.476 197.127 0.55 41.84 ? C4 PEG 505 B 1 HETATM 12 C C4 PEG . B . O 3 -7.076 -29.167 196.875 0.45 45.44 ? C4 PEG 505 B 1 HETATM 13 O O4 PEG . A . O 3 -6.183 -27.397 197.087 0.55 41.3 ? O4 PEG 505 B 1 HETATM 14 O O4 PEG . B . O 3 -7.653 -29.751 198.009 0.45 10.19 ? O4 PEG 505 B 1 HETATM 15 H H11 PEG . A . O 3 -1.015 -29.944 196.597 0.55 57.86 ? H11 PEG 505 B 1 HETATM 16 H H11 PEG . B . O 3 -2.777 -30.677 195.536 0.45 64.57 ? H11 PEG 505 B 1 HETATM 17 H H12 PEG . A . O 3 -0.978 -30.799 195.241 0.55 57.86 ? H12 PEG 505 B 1 HETATM 18 H H12 PEG . B . O 3 -2.867 -29.718 194.254 0.45 64.57 ? H12 PEG 505 B 1 HETATM 19 H HO1 PEG . A . O 3 0.843 -29.601 195.379 0.55 46.43 ? HO1 PEG 505 B 1 HETATM 20 H HO1 PEG . B . O 3 -0.928 -29.207 194.611 0.45 59.19 ? HO1 PEG 505 B 1 HETATM 21 H H21 PEG . A . O 3 -2.115 -28.256 194.985 0.55 64.81 ? H21 PEG 505 B 1 HETATM 22 H H21 PEG . B . O 3 -3.239 -28.759 196.916 0.45 65.41 ? H21 PEG 505 B 1 HETATM 23 H H22 PEG . A . O 3 -2.606 -29.61 194.32 0.55 64.81 ? H22 PEG 505 B 1 HETATM 24 H H22 PEG . B . O 3 -3.486 -27.913 195.598 0.45 65.41 ? H22 PEG 505 B 1 HETATM 25 H H31 PEG . A . O 3 -4.169 -27.558 195.75 0.55 58.04 ? H31 PEG 505 B 1 HETATM 26 H H31 PEG . B . O 3 -5.567 -27.918 197.286 0.45 49.33 ? H31 PEG 505 B 1 HETATM 27 H H32 PEG . A . O 3 -4.977 -28.8 195.178 0.55 58.04 ? H32 PEG 505 B 1 HETATM 28 H H32 PEG . B . O 3 -5.367 -29.371 197.897 0.45 49.33 ? H32 PEG 505 B 1 HETATM 29 H H41 PEG . A . O 3 -5.794 -29.306 197.165 0.55 50.21 ? H41 PEG 505 B 1 HETATM 30 H H41 PEG . B . O 3 -7.544 -28.344 196.665 0.45 54.53 ? H41 PEG 505 B 1 HETATM 31 H H42 PEG . A . O 3 -4.735 -28.402 197.908 0.55 50.21 ? H42 PEG 505 B 1 HETATM 32 H H42 PEG . B . O 3 -7.15 -29.774 196.132 0.45 54.53 ? H42 PEG 505 B 1 HETATM 33 H HO4 PEG . A . O 3 -6.949 -27.659 197.297 0.55 49.56 ? HO4 PEG 505 B 1 HETATM 34 H HO4 PEG . B . O 3 -8.463 -29.548 198.046 0.45 12.23 ? HO4 PEG 505 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 34 #