data_5U44 # _model_server_result.job_id JKWSGHYTFXf3MBnpgmZDZw _model_server_result.datetime_utc '2024-11-14 23:24:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u44 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 5U44 # _exptl.entry_id 5U44 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.342 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'heptyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.65 _cell.angle_gamma 90 _cell.entry_id 5U44 _cell.length_a 39.57 _cell.length_b 95.41 _cell.length_c 96.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U44 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,J 1 1 B,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C13 H26 O6' _chem_comp.formula_weight 278.342 _chem_comp.id B7G _chem_comp.mon_nstd_flag n _chem_comp.name 'heptyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'HEPTYL-BETA-D-GLUCOPYRANOSIDE;heptyl beta-D-glucoside;heptyl D-glucoside;heptyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 O5 B7G sing 138 n n C5 C4 B7G sing 139 n n C5 C6 B7G sing 140 n n C5 H5 B7G sing 141 n n O5 C1 B7G sing 142 n n C1 C2 B7G sing 143 n n C1 O1 B7G sing 144 n n C1 H1 B7G sing 145 n n C2 C3 B7G sing 146 n n C2 O2 B7G sing 147 n n C2 H2 B7G sing 148 n n C3 C4 B7G sing 149 n n C3 O3 B7G sing 150 n n C3 H3 B7G sing 151 n n C4 O4 B7G sing 152 n n C4 H4 B7G sing 153 n n C6 O6 B7G sing 154 n n C6 H61 B7G sing 155 n n C6 H62 B7G sing 156 n n O1 C7 B7G sing 157 n n C7 C8 B7G sing 158 n n C7 H71 B7G sing 159 n n C7 H72 B7G sing 160 n n C8 C9 B7G sing 161 n n C8 H81 B7G sing 162 n n C8 H82 B7G sing 163 n n C9 C10 B7G sing 164 n n C9 H91 B7G sing 165 n n C9 H92 B7G sing 166 n n C10 C11 B7G sing 167 n n C10 H101 B7G sing 168 n n C10 H102 B7G sing 169 n n C11 C12 B7G sing 170 n n C11 H111 B7G sing 171 n n C11 H112 B7G sing 172 n n C12 C13 B7G sing 173 n n C12 H121 B7G sing 174 n n C12 H122 B7G sing 175 n n O2 HO2 B7G sing 176 n n O3 HO3 B7G sing 177 n n O4 HO4 B7G sing 178 n n O6 HO6 B7G sing 179 n n C13 H131 B7G sing 180 n n C13 H132 B7G sing 181 n n C13 H133 B7G sing 182 n n # _pdbx_chem_comp_identifier.comp_id B7G _pdbx_chem_comp_identifier.identifier heptyl-b-D-Glucopyranoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 5U44 _atom_sites.fract_transf_matrix[1][1] 0.025272 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003394 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010491 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B7G A 1 501 442 B7G B7G . D 3 PGO A 1 502 443 PGO PGO . E 3 PGO A 1 503 444 PGO PGO . F 4 7SV A 1 504 464 7SV LIG . G 2 B7G A 1 505 442 B7G B7G . H 3 PGO B 1 501 443 PGO PGO . I 4 7SV B 1 502 464 7SV LIG . J 5 HOH A 1 601 84 HOH HOH . J 5 HOH A 2 602 41 HOH HOH . J 5 HOH A 3 603 22 HOH HOH . J 5 HOH A 4 604 149 HOH HOH . J 5 HOH A 5 605 12 HOH HOH . J 5 HOH A 6 606 43 HOH HOH . J 5 HOH A 7 607 15 HOH HOH . J 5 HOH A 8 608 79 HOH HOH . J 5 HOH A 9 609 28 HOH HOH . J 5 HOH A 10 610 100 HOH HOH . J 5 HOH A 11 611 8 HOH HOH . J 5 HOH A 12 612 34 HOH HOH . J 5 HOH A 13 613 2 HOH HOH . J 5 HOH A 14 614 53 HOH HOH . J 5 HOH A 15 615 44 HOH HOH . J 5 HOH A 16 616 50 HOH HOH . J 5 HOH A 17 617 109 HOH HOH . J 5 HOH A 18 618 55 HOH HOH . J 5 HOH A 19 619 52 HOH HOH . J 5 HOH A 20 620 98 HOH HOH . J 5 HOH A 21 621 21 HOH HOH . J 5 HOH A 22 622 3 HOH HOH . J 5 HOH A 23 623 145 HOH HOH . J 5 HOH A 24 624 137 HOH HOH . J 5 HOH A 25 625 36 HOH HOH . J 5 HOH A 26 626 138 HOH HOH . J 5 HOH A 27 627 113 HOH HOH . J 5 HOH A 28 628 89 HOH HOH . J 5 HOH A 29 629 91 HOH HOH . J 5 HOH A 30 630 24 HOH HOH . J 5 HOH A 31 631 130 HOH HOH . J 5 HOH A 32 632 47 HOH HOH . J 5 HOH A 33 633 51 HOH HOH . J 5 HOH A 34 634 73 HOH HOH . J 5 HOH A 35 635 27 HOH HOH . J 5 HOH A 36 636 59 HOH HOH . J 5 HOH A 37 637 124 HOH HOH . J 5 HOH A 38 638 31 HOH HOH . J 5 HOH A 39 639 151 HOH HOH . J 5 HOH A 40 640 64 HOH HOH . J 5 HOH A 41 641 132 HOH HOH . K 5 HOH B 1 601 1 HOH HOH . K 5 HOH B 2 602 103 HOH HOH . K 5 HOH B 3 603 62 HOH HOH . K 5 HOH B 4 604 77 HOH HOH . K 5 HOH B 5 605 140 HOH HOH . K 5 HOH B 6 606 66 HOH HOH . K 5 HOH B 7 607 101 HOH HOH . K 5 HOH B 8 608 144 HOH HOH . K 5 HOH B 9 609 38 HOH HOH . K 5 HOH B 10 610 148 HOH HOH . K 5 HOH B 11 611 45 HOH HOH . K 5 HOH B 12 612 10 HOH HOH . K 5 HOH B 13 613 61 HOH HOH . K 5 HOH B 14 614 40 HOH HOH . K 5 HOH B 15 615 26 HOH HOH . K 5 HOH B 16 616 4 HOH HOH . K 5 HOH B 17 617 131 HOH HOH . K 5 HOH B 18 618 7 HOH HOH . K 5 HOH B 19 619 13 HOH HOH . K 5 HOH B 20 620 60 HOH HOH . K 5 HOH B 21 621 56 HOH HOH . K 5 HOH B 22 622 35 HOH HOH . K 5 HOH B 23 623 57 HOH HOH . K 5 HOH B 24 624 16 HOH HOH . K 5 HOH B 25 625 11 HOH HOH . K 5 HOH B 26 626 76 HOH HOH . K 5 HOH B 27 627 102 HOH HOH . K 5 HOH B 28 628 6 HOH HOH . K 5 HOH B 29 629 120 HOH HOH . K 5 HOH B 30 630 133 HOH HOH . K 5 HOH B 31 631 142 HOH HOH . K 5 HOH B 32 632 99 HOH HOH . K 5 HOH B 33 633 39 HOH HOH . K 5 HOH B 34 634 106 HOH HOH . K 5 HOH B 35 635 116 HOH HOH . K 5 HOH B 36 636 90 HOH HOH . K 5 HOH B 37 637 85 HOH HOH . K 5 HOH B 38 638 72 HOH HOH . K 5 HOH B 39 639 54 HOH HOH . K 5 HOH B 40 640 37 HOH HOH . K 5 HOH B 41 641 42 HOH HOH . K 5 HOH B 42 642 135 HOH HOH . K 5 HOH B 43 643 117 HOH HOH . K 5 HOH B 44 644 141 HOH HOH . K 5 HOH B 45 645 152 HOH HOH . K 5 HOH B 46 646 93 HOH HOH . K 5 HOH B 47 647 125 HOH HOH . K 5 HOH B 48 648 136 HOH HOH . K 5 HOH B 49 649 128 HOH HOH . K 5 HOH B 50 650 95 HOH HOH . K 5 HOH B 51 651 33 HOH HOH . K 5 HOH B 52 652 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 B7G . . . C 2 48.562 -20.692 117.773 1 53.75 ? C5 B7G 501 A 1 HETATM 2 O O5 B7G . . . C 2 48.109 -21.642 116.749 1 54.76 ? O5 B7G 501 A 1 HETATM 3 C C1 B7G . . . C 2 48.811 -22.928 116.817 1 52.1 ? C1 B7G 501 A 1 HETATM 4 C C2 B7G . . . C 2 50.32 -22.738 116.776 1 54.88 ? C2 B7G 501 A 1 HETATM 5 C C3 B7G . . . C 2 50.765 -21.86 117.881 1 57.49 ? C3 B7G 501 A 1 HETATM 6 C C4 B7G . . . C 2 50.079 -20.55 117.832 1 51.66 ? C4 B7G 501 A 1 HETATM 7 C C6 B7G . . . C 2 47.964 -19.35 117.495 1 60.67 ? C6 B7G 501 A 1 HETATM 8 O O1 B7G . . . C 2 48.396 -23.718 115.747 1 48.28 ? O1 B7G 501 A 1 HETATM 9 C C7 B7G . . . C 2 47.55 -24.821 116.105 1 48.26 ? C7 B7G 501 A 1 HETATM 10 C C8 B7G . . . C 2 46.825 -25.334 114.842 1 62.25 ? C8 B7G 501 A 1 HETATM 11 C C9 B7G . . . C 2 45.69 -26.311 115.213 1 64.34 ? C9 B7G 501 A 1 HETATM 12 C C10 B7G . . . C 2 44.313 -25.612 115.107 1 61.84 ? C10 B7G 501 A 1 HETATM 13 C C11 B7G . . . C 2 43.212 -26.687 114.92 1 46.99 ? C11 B7G 501 A 1 HETATM 14 C C12 B7G . . . C 2 41.803 -26.048 114.963 1 46.73 ? C12 B7G 501 A 1 HETATM 15 O O2 B7G . . . C 2 50.97 -24.008 116.889 1 47.27 ? O2 B7G 501 A 1 HETATM 16 O O3 B7G . . . C 2 52.207 -21.654 117.787 1 51.78 ? O3 B7G 501 A 1 HETATM 17 O O4 B7G . . . C 2 50.43 -19.805 119.006 1 42.1 ? O4 B7G 501 A 1 HETATM 18 O O6 B7G . . . C 2 46.575 -19.48 117.326 1 58.98 ? O6 B7G 501 A 1 HETATM 19 C C13 B7G . . . C 2 41.621 -25.018 113.839 1 47.18 ? C13 B7G 501 A 1 HETATM 20 H H5 B7G . . . C 2 48.245 -21 118.642 1 64.5 ? H5 B7G 501 A 1 HETATM 21 H H1 B7G . . . C 2 48.572 -23.373 117.65 1 62.53 ? H1 B7G 501 A 1 HETATM 22 H H2 B7G . . . C 2 50.566 -22.327 115.923 1 65.86 ? H2 B7G 501 A 1 HETATM 23 H H3 B7G . . . C 2 50.562 -22.291 118.728 1 68.98 ? H3 B7G 501 A 1 HETATM 24 H H4 B7G . . . C 2 50.386 -20.057 117.036 1 61.99 ? H4 B7G 501 A 1 HETATM 25 H H61 B7G . . . C 2 48.356 -18.982 116.684 1 72.8 ? H61 B7G 501 A 1 HETATM 26 H H62 B7G . . . C 2 48.147 -18.747 118.25 1 72.8 ? H62 B7G 501 A 1 HETATM 27 H H71 B7G . . . C 2 46.888 -24.53 116.759 1 57.91 ? H71 B7G 501 A 1 HETATM 28 H H72 B7G . . . C 2 48.092 -25.548 116.498 1 57.91 ? H72 B7G 501 A 1 HETATM 29 H H81 B7G . . . C 2 46.451 -24.581 114.352 1 74.7 ? H81 B7G 501 A 1 HETATM 30 H H82 B7G . . . C 2 47.476 -25.799 114.269 1 74.7 ? H82 B7G 501 A 1 HETATM 31 H H91 B7G . . . C 2 45.708 -27.058 114.592 1 77.21 ? H91 B7G 501 A 1 HETATM 32 H H92 B7G . . . C 2 45.823 -26.646 116.125 1 77.21 ? H92 B7G 501 A 1 HETATM 33 H H101 B7G . . . C 2 44.136 -25.095 115.912 1 74.21 ? H101 B7G 501 A 1 HETATM 34 H H102 B7G . . . C 2 44.308 -25.009 114.331 1 74.21 ? H102 B7G 501 A 1 HETATM 35 H H111 B7G . . . C 2 43.342 -27.144 114.056 1 56.38 ? H111 B7G 501 A 1 HETATM 36 H H112 B7G . . . C 2 43.286 -27.335 115.647 1 56.38 ? H112 B7G 501 A 1 HETATM 37 H H121 B7G . . . C 2 41.131 -26.749 114.867 1 56.07 ? H121 B7G 501 A 1 HETATM 38 H H122 B7G . . . C 2 41.68 -25.602 115.828 1 56.07 ? H122 B7G 501 A 1 HETATM 39 H HO2 B7G . . . C 2 51.571 -24.097 116.226 1 56.72 ? HO2 B7G 501 A 1 HETATM 40 H HO3 B7G . . . C 2 52.6 -21.962 118.524 1 62.13 ? HO3 B7G 501 A 1 HETATM 41 H HO4 B7G . . . C 2 51.028 -19.173 118.791 1 50.52 ? HO4 B7G 501 A 1 HETATM 42 H HO6 B7G . . . C 2 46.215 -18.679 117.212 1 70.77 ? HO6 B7G 501 A 1 HETATM 43 H H131 B7G . . . C 2 41.689 -25.469 112.965 1 56.62 ? H131 B7G 501 A 1 HETATM 44 H H132 B7G . . . C 2 40.74 -24.597 113.921 1 56.62 ? H132 B7G 501 A 1 HETATM 45 H H133 B7G . . . C 2 42.314 -24.336 113.907 1 56.62 ? H133 B7G 501 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 45 #