data_5U44 # _model_server_result.job_id U3iVebqvgzpA2OzabiDGWA _model_server_result.datetime_utc '2024-11-24 00:33:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u44 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":505}' # _entry.id 5U44 # _exptl.entry_id 5U44 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.342 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'heptyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.65 _cell.angle_gamma 90 _cell.entry_id 5U44 _cell.length_a 39.57 _cell.length_b 95.41 _cell.length_c 96.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U44 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,J 1 1 B,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C13 H26 O6' _chem_comp.formula_weight 278.342 _chem_comp.id B7G _chem_comp.mon_nstd_flag n _chem_comp.name 'heptyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'HEPTYL-BETA-D-GLUCOPYRANOSIDE;heptyl beta-D-glucoside;heptyl D-glucoside;heptyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 O5 B7G sing 138 n n C5 C4 B7G sing 139 n n C5 C6 B7G sing 140 n n C5 H5 B7G sing 141 n n O5 C1 B7G sing 142 n n C1 C2 B7G sing 143 n n C1 O1 B7G sing 144 n n C1 H1 B7G sing 145 n n C2 C3 B7G sing 146 n n C2 O2 B7G sing 147 n n C2 H2 B7G sing 148 n n C3 C4 B7G sing 149 n n C3 O3 B7G sing 150 n n C3 H3 B7G sing 151 n n C4 O4 B7G sing 152 n n C4 H4 B7G sing 153 n n C6 O6 B7G sing 154 n n C6 H61 B7G sing 155 n n C6 H62 B7G sing 156 n n O1 C7 B7G sing 157 n n C7 C8 B7G sing 158 n n C7 H71 B7G sing 159 n n C7 H72 B7G sing 160 n n C8 C9 B7G sing 161 n n C8 H81 B7G sing 162 n n C8 H82 B7G sing 163 n n C9 C10 B7G sing 164 n n C9 H91 B7G sing 165 n n C9 H92 B7G sing 166 n n C10 C11 B7G sing 167 n n C10 H101 B7G sing 168 n n C10 H102 B7G sing 169 n n C11 C12 B7G sing 170 n n C11 H111 B7G sing 171 n n C11 H112 B7G sing 172 n n C12 C13 B7G sing 173 n n C12 H121 B7G sing 174 n n C12 H122 B7G sing 175 n n O2 HO2 B7G sing 176 n n O3 HO3 B7G sing 177 n n O4 HO4 B7G sing 178 n n O6 HO6 B7G sing 179 n n C13 H131 B7G sing 180 n n C13 H132 B7G sing 181 n n C13 H133 B7G sing 182 n n # _pdbx_chem_comp_identifier.comp_id B7G _pdbx_chem_comp_identifier.identifier heptyl-b-D-Glucopyranoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 5U44 _atom_sites.fract_transf_matrix[1][1] 0.025272 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003394 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010491 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B7G A 1 501 442 B7G B7G . D 3 PGO A 1 502 443 PGO PGO . E 3 PGO A 1 503 444 PGO PGO . F 4 7SV A 1 504 464 7SV LIG . G 2 B7G A 1 505 442 B7G B7G . H 3 PGO B 1 501 443 PGO PGO . I 4 7SV B 1 502 464 7SV LIG . J 5 HOH A 1 601 84 HOH HOH . J 5 HOH A 2 602 41 HOH HOH . J 5 HOH A 3 603 22 HOH HOH . J 5 HOH A 4 604 149 HOH HOH . J 5 HOH A 5 605 12 HOH HOH . J 5 HOH A 6 606 43 HOH HOH . J 5 HOH A 7 607 15 HOH HOH . J 5 HOH A 8 608 79 HOH HOH . J 5 HOH A 9 609 28 HOH HOH . J 5 HOH A 10 610 100 HOH HOH . J 5 HOH A 11 611 8 HOH HOH . J 5 HOH A 12 612 34 HOH HOH . J 5 HOH A 13 613 2 HOH HOH . J 5 HOH A 14 614 53 HOH HOH . J 5 HOH A 15 615 44 HOH HOH . J 5 HOH A 16 616 50 HOH HOH . J 5 HOH A 17 617 109 HOH HOH . J 5 HOH A 18 618 55 HOH HOH . J 5 HOH A 19 619 52 HOH HOH . J 5 HOH A 20 620 98 HOH HOH . J 5 HOH A 21 621 21 HOH HOH . J 5 HOH A 22 622 3 HOH HOH . J 5 HOH A 23 623 145 HOH HOH . J 5 HOH A 24 624 137 HOH HOH . J 5 HOH A 25 625 36 HOH HOH . J 5 HOH A 26 626 138 HOH HOH . J 5 HOH A 27 627 113 HOH HOH . J 5 HOH A 28 628 89 HOH HOH . J 5 HOH A 29 629 91 HOH HOH . J 5 HOH A 30 630 24 HOH HOH . J 5 HOH A 31 631 130 HOH HOH . J 5 HOH A 32 632 47 HOH HOH . J 5 HOH A 33 633 51 HOH HOH . J 5 HOH A 34 634 73 HOH HOH . J 5 HOH A 35 635 27 HOH HOH . J 5 HOH A 36 636 59 HOH HOH . J 5 HOH A 37 637 124 HOH HOH . J 5 HOH A 38 638 31 HOH HOH . J 5 HOH A 39 639 151 HOH HOH . J 5 HOH A 40 640 64 HOH HOH . J 5 HOH A 41 641 132 HOH HOH . K 5 HOH B 1 601 1 HOH HOH . K 5 HOH B 2 602 103 HOH HOH . K 5 HOH B 3 603 62 HOH HOH . K 5 HOH B 4 604 77 HOH HOH . K 5 HOH B 5 605 140 HOH HOH . K 5 HOH B 6 606 66 HOH HOH . K 5 HOH B 7 607 101 HOH HOH . K 5 HOH B 8 608 144 HOH HOH . K 5 HOH B 9 609 38 HOH HOH . K 5 HOH B 10 610 148 HOH HOH . K 5 HOH B 11 611 45 HOH HOH . K 5 HOH B 12 612 10 HOH HOH . K 5 HOH B 13 613 61 HOH HOH . K 5 HOH B 14 614 40 HOH HOH . K 5 HOH B 15 615 26 HOH HOH . K 5 HOH B 16 616 4 HOH HOH . K 5 HOH B 17 617 131 HOH HOH . K 5 HOH B 18 618 7 HOH HOH . K 5 HOH B 19 619 13 HOH HOH . K 5 HOH B 20 620 60 HOH HOH . K 5 HOH B 21 621 56 HOH HOH . K 5 HOH B 22 622 35 HOH HOH . K 5 HOH B 23 623 57 HOH HOH . K 5 HOH B 24 624 16 HOH HOH . K 5 HOH B 25 625 11 HOH HOH . K 5 HOH B 26 626 76 HOH HOH . K 5 HOH B 27 627 102 HOH HOH . K 5 HOH B 28 628 6 HOH HOH . K 5 HOH B 29 629 120 HOH HOH . K 5 HOH B 30 630 133 HOH HOH . K 5 HOH B 31 631 142 HOH HOH . K 5 HOH B 32 632 99 HOH HOH . K 5 HOH B 33 633 39 HOH HOH . K 5 HOH B 34 634 106 HOH HOH . K 5 HOH B 35 635 116 HOH HOH . K 5 HOH B 36 636 90 HOH HOH . K 5 HOH B 37 637 85 HOH HOH . K 5 HOH B 38 638 72 HOH HOH . K 5 HOH B 39 639 54 HOH HOH . K 5 HOH B 40 640 37 HOH HOH . K 5 HOH B 41 641 42 HOH HOH . K 5 HOH B 42 642 135 HOH HOH . K 5 HOH B 43 643 117 HOH HOH . K 5 HOH B 44 644 141 HOH HOH . K 5 HOH B 45 645 152 HOH HOH . K 5 HOH B 46 646 93 HOH HOH . K 5 HOH B 47 647 125 HOH HOH . K 5 HOH B 48 648 136 HOH HOH . K 5 HOH B 49 649 128 HOH HOH . K 5 HOH B 50 650 95 HOH HOH . K 5 HOH B 51 651 33 HOH HOH . K 5 HOH B 52 652 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 B7G . . . G 2 48.459 -19.869 121.76 1 63.97 ? C5 B7G 505 A 1 HETATM 2 O O5 B7G . . . G 2 47.698 -18.952 122.612 1 50.52 ? O5 B7G 505 A 1 HETATM 3 C C1 B7G . . . G 2 48.434 -17.706 122.844 1 61.08 ? C1 B7G 505 A 1 HETATM 4 C C2 B7G . . . G 2 49.806 -17.965 123.45 1 66.87 ? C2 B7G 505 A 1 HETATM 5 C C3 B7G . . . G 2 50.594 -18.902 122.616 1 75.72 ? C3 B7G 505 A 1 HETATM 6 C C4 B7G . . . G 2 49.848 -20.147 122.323 1 70.92 ? C4 B7G 505 A 1 HETATM 7 C C6 B7G . . . G 2 47.711 -21.156 121.621 1 66.59 ? C6 B7G 505 A 1 HETATM 8 O O1 B7G . . . G 2 47.678 -16.882 123.675 1 55.99 ? O1 B7G 505 A 1 HETATM 9 C C7 B7G . . . G 2 46.501 -16.401 123.013 1 52.41 ? C7 B7G 505 A 1 HETATM 10 C C8 B7G . . . G 2 45.687 -15.451 123.917 1 45.06 ? C8 B7G 505 A 1 HETATM 11 C C9 B7G . . . G 2 44.53 -14.88 123.076 1 49.15 ? C9 B7G 505 A 1 HETATM 12 C C10 B7G . . . G 2 43.446 -14.269 123.991 1 58.86 ? C10 B7G 505 A 1 HETATM 13 C C11 B7G . . . G 2 42.188 -13.952 123.148 1 53.22 ? C11 B7G 505 A 1 HETATM 14 C C12 B7G . . . G 2 41.408 -15.26 122.884 1 46.76 ? C12 B7G 505 A 1 HETATM 15 O O2 B7G . . . G 2 50.515 -16.725 123.556 1 53.53 ? O2 B7G 505 A 1 HETATM 16 O O3 B7G . . . G 2 51.829 -19.247 123.313 1 88.28 ? O3 B7G 505 A 1 HETATM 17 O O4 B7G . . . G 2 50.59 -20.917 121.369 1 58.44 ? O4 B7G 505 A 1 HETATM 18 O O6 B7G . . . G 2 46.416 -21.013 122.145 1 62.66 ? O6 B7G 505 A 1 HETATM 19 C C13 B7G . . . G 2 40.078 -15.239 123.647 1 53.74 ? C13 B7G 505 A 1 HETATM 20 H H5 B7G . . . G 2 48.555 -19.467 120.877 1 76.76 ? H5 B7G 505 A 1 HETATM 21 H H1 B7G . . . G 2 48.555 -17.255 121.989 1 73.29 ? H1 B7G 505 A 1 HETATM 22 H H2 B7G . . . G 2 49.694 -18.347 124.343 1 80.25 ? H2 B7G 505 A 1 HETATM 23 H H3 B7G . . . G 2 50.818 -18.464 121.777 1 90.86 ? H3 B7G 505 A 1 HETATM 24 H H4 B7G . . . G 2 49.757 -20.668 123.154 1 85.1 ? H4 B7G 505 A 1 HETATM 25 H H61 B7G . . . G 2 47.654 -21.397 120.68 1 79.91 ? H61 B7G 505 A 1 HETATM 26 H H62 B7G . . . G 2 48.185 -21.864 122.111 1 79.91 ? H62 B7G 505 A 1 HETATM 27 H H71 B7G . . . G 2 45.939 -17.159 122.766 1 62.89 ? H71 B7G 505 A 1 HETATM 28 H H72 B7G . . . G 2 46.759 -15.92 122.189 1 62.89 ? H72 B7G 505 A 1 HETATM 29 H H81 B7G . . . G 2 46.253 -14.726 124.237 1 54.07 ? H81 B7G 505 A 1 HETATM 30 H H82 B7G . . . G 2 45.325 -15.954 124.682 1 54.07 ? H82 B7G 505 A 1 HETATM 31 H H91 B7G . . . G 2 44.132 -15.591 122.548 1 58.98 ? H91 B7G 505 A 1 HETATM 32 H H92 B7G . . . G 2 44.872 -14.19 122.468 1 58.98 ? H92 B7G 505 A 1 HETATM 33 H H101 B7G . . . G 2 43.776 -13.459 124.417 1 70.63 ? H101 B7G 505 A 1 HETATM 34 H H102 B7G . . . G 2 43.211 -14.93 124.68 1 70.63 ? H102 B7G 505 A 1 HETATM 35 H H111 B7G . . . G 2 42.441 -13.529 122.294 1 63.86 ? H111 B7G 505 A 1 HETATM 36 H H112 B7G . . . G 2 41.619 -13.343 123.658 1 63.86 ? H112 B7G 505 A 1 HETATM 37 H H121 B7G . . . G 2 41.942 -16.023 123.178 1 56.11 ? H121 B7G 505 A 1 HETATM 38 H H122 B7G . . . G 2 41.227 -15.341 121.924 1 56.11 ? H122 B7G 505 A 1 HETATM 39 H HO2 B7G . . . G 2 50.715 -16.567 124.419 1 64.24 ? HO2 B7G 505 A 1 HETATM 40 H HO3 B7G . . . G 2 52.528 -18.963 122.839 1 105.94 ? HO3 B7G 505 A 1 HETATM 41 H HO4 B7G . . . G 2 51.011 -21.588 121.788 1 70.12 ? HO4 B7G 505 A 1 HETATM 42 H HO6 B7G . . . G 2 45.905 -21.677 121.857 1 75.19 ? HO6 B7G 505 A 1 HETATM 43 H H131 B7G . . . G 2 39.609 -16.095 123.513 1 64.49 ? H131 B7G 505 A 1 HETATM 44 H H132 B7G . . . G 2 40.252 -15.108 124.602 1 64.49 ? H132 B7G 505 A 1 HETATM 45 H H133 B7G . . . G 2 39.524 -14.509 123.315 1 64.49 ? H133 B7G 505 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 440 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 45 #