data_5U4C
#
_model_server_result.job_id            qJbMRCjTVIz1sxC7SLcTXw 
_model_server_result.datetime_utc      '2025-07-31 07:29:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5u4c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":200}' 
#
_entry.id    5U4C 
#
_exptl.entry_id    5U4C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              268.072 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-[(E)-2-(4-boronophenyl)ethenyl]benzoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5U4C 
_cell.length_a            42.924 
_cell.length_b            85.58 
_cell.length_c            63.762 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5U4C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_675 -x+1,-y+2,z -1 0 0 0 -1 0 0 0 1 42.924 171.16 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C15 H13 B O4' 
_chem_comp.formula_weight    268.072 
_chem_comp.id                XBS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-[(E)-2-(4-boronophenyl)ethenyl]benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O04 C15 XBS doub 357 n n 
C15 O03 XBS sing 358 n n 
C15 C02 XBS sing 359 n n 
C01 C02 XBS doub 360 n y 
C01 C06 XBS sing 361 n y 
C02 C03 XBS sing 362 n y 
C06 C05 XBS doub 363 n y 
C03 C04 XBS doub 364 n y 
C05 C04 XBS sing 365 n y 
C04 C07 XBS sing 366 n n 
C07 C08 XBS doub 367 e n 
C08 C09 XBS sing 368 n n 
C09 C10 XBS doub 369 n y 
C09 C14 XBS sing 370 n y 
C10 C11 XBS sing 371 n y 
C14 C13 XBS doub 372 n y 
C11 C12 XBS doub 373 n y 
C13 C12 XBS sing 374 n y 
C12 B01 XBS sing 375 n n 
B01 O01 XBS sing 376 n n 
B01 O02 XBS sing 377 n n 
C01 H1 XBS sing 378 n n 
C03 H2 XBS sing 379 n n 
C05 H3 XBS sing 380 n n 
C06 H4 XBS sing 381 n n 
C07 H5 XBS sing 382 n n 
C08 H6 XBS sing 383 n n 
C10 H7 XBS sing 384 n n 
C11 H8 XBS sing 385 n n 
C13 H9 XBS sing 386 n n 
C14 H10 XBS sing 387 n n 
O01 H11 XBS sing 388 n n 
O02 H12 XBS sing 389 n n 
O03 H13 XBS sing 390 n n 
#
_atom_sites.entry_id                     5U4C 
_atom_sites.fract_transf_matrix[1][1]    0.023297 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011685 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015683 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 XBS A 1 200 200 XBS XBS . 
D 2 XBS B 1 200 200 XBS XBS . 
E 3 HOH A 1 301 125 HOH HOH . 
E 3 HOH A 2 302 127 HOH HOH . 
E 3 HOH A 3 303 53 HOH HOH . 
E 3 HOH A 4 304 97 HOH HOH . 
E 3 HOH A 5 305 109 HOH HOH . 
E 3 HOH A 6 306 10 HOH HOH . 
E 3 HOH A 7 307 74 HOH HOH . 
E 3 HOH A 8 308 58 HOH HOH . 
E 3 HOH A 9 309 95 HOH HOH . 
E 3 HOH A 10 310 28 HOH HOH . 
E 3 HOH A 11 311 67 HOH HOH . 
E 3 HOH A 12 312 104 HOH HOH . 
E 3 HOH A 13 313 66 HOH HOH . 
E 3 HOH A 14 314 27 HOH HOH . 
E 3 HOH A 15 315 13 HOH HOH . 
E 3 HOH A 16 316 107 HOH HOH . 
E 3 HOH A 17 317 131 HOH HOH . 
E 3 HOH A 18 318 121 HOH HOH . 
E 3 HOH A 19 319 78 HOH HOH . 
E 3 HOH A 20 320 36 HOH HOH . 
E 3 HOH A 21 321 7 HOH HOH . 
E 3 HOH A 22 322 126 HOH HOH . 
E 3 HOH A 23 323 69 HOH HOH . 
E 3 HOH A 24 324 35 HOH HOH . 
E 3 HOH A 25 325 90 HOH HOH . 
E 3 HOH A 26 326 14 HOH HOH . 
E 3 HOH A 27 327 83 HOH HOH . 
E 3 HOH A 28 328 89 HOH HOH . 
E 3 HOH A 29 329 111 HOH HOH . 
E 3 HOH A 30 330 132 HOH HOH . 
E 3 HOH A 31 331 130 HOH HOH . 
E 3 HOH A 32 332 2 HOH HOH . 
E 3 HOH A 33 333 3 HOH HOH . 
E 3 HOH A 34 334 52 HOH HOH . 
E 3 HOH A 35 335 73 HOH HOH . 
E 3 HOH A 36 336 4 HOH HOH . 
E 3 HOH A 37 337 61 HOH HOH . 
E 3 HOH A 38 338 15 HOH HOH . 
E 3 HOH A 39 339 25 HOH HOH . 
E 3 HOH A 40 340 115 HOH HOH . 
E 3 HOH A 41 341 105 HOH HOH . 
E 3 HOH A 42 342 71 HOH HOH . 
E 3 HOH A 43 343 51 HOH HOH . 
E 3 HOH A 44 344 85 HOH HOH . 
E 3 HOH A 45 345 62 HOH HOH . 
E 3 HOH A 46 346 44 HOH HOH . 
E 3 HOH A 47 347 18 HOH HOH . 
E 3 HOH A 48 348 122 HOH HOH . 
E 3 HOH A 49 349 19 HOH HOH . 
E 3 HOH A 50 350 86 HOH HOH . 
E 3 HOH A 51 351 103 HOH HOH . 
E 3 HOH A 52 352 54 HOH HOH . 
E 3 HOH A 53 353 72 HOH HOH . 
E 3 HOH A 54 354 68 HOH HOH . 
E 3 HOH A 55 355 21 HOH HOH . 
E 3 HOH A 56 356 124 HOH HOH . 
E 3 HOH A 57 357 32 HOH HOH . 
E 3 HOH A 58 358 129 HOH HOH . 
E 3 HOH A 59 359 24 HOH HOH . 
E 3 HOH A 60 360 63 HOH HOH . 
E 3 HOH A 61 361 64 HOH HOH . 
E 3 HOH A 62 362 99 HOH HOH . 
E 3 HOH A 63 363 30 HOH HOH . 
E 3 HOH A 64 364 42 HOH HOH . 
E 3 HOH A 65 365 110 HOH HOH . 
E 3 HOH A 66 366 46 HOH HOH . 
E 3 HOH A 67 367 101 HOH HOH . 
E 3 HOH A 68 368 118 HOH HOH . 
E 3 HOH A 69 369 93 HOH HOH . 
E 3 HOH A 70 370 116 HOH HOH . 
E 3 HOH A 71 371 70 HOH HOH . 
E 3 HOH A 72 372 102 HOH HOH . 
E 3 HOH A 73 373 65 HOH HOH . 
E 3 HOH A 74 374 55 HOH HOH . 
E 3 HOH A 75 375 84 HOH HOH . 
E 3 HOH A 76 376 117 HOH HOH . 
E 3 HOH A 77 377 128 HOH HOH . 
F 3 HOH B 1 301 87 HOH HOH . 
F 3 HOH B 2 302 38 HOH HOH . 
F 3 HOH B 3 303 37 HOH HOH . 
F 3 HOH B 4 304 57 HOH HOH . 
F 3 HOH B 5 305 92 HOH HOH . 
F 3 HOH B 6 306 40 HOH HOH . 
F 3 HOH B 7 307 81 HOH HOH . 
F 3 HOH B 8 308 119 HOH HOH . 
F 3 HOH B 9 309 8 HOH HOH . 
F 3 HOH B 10 310 6 HOH HOH . 
F 3 HOH B 11 311 45 HOH HOH . 
F 3 HOH B 12 312 77 HOH HOH . 
F 3 HOH B 13 313 98 HOH HOH . 
F 3 HOH B 14 314 39 HOH HOH . 
F 3 HOH B 15 315 59 HOH HOH . 
F 3 HOH B 16 316 48 HOH HOH . 
F 3 HOH B 17 317 12 HOH HOH . 
F 3 HOH B 18 318 91 HOH HOH . 
F 3 HOH B 19 319 5 HOH HOH . 
F 3 HOH B 20 320 114 HOH HOH . 
F 3 HOH B 21 321 96 HOH HOH . 
F 3 HOH B 22 322 29 HOH HOH . 
F 3 HOH B 23 323 112 HOH HOH . 
F 3 HOH B 24 324 133 HOH HOH . 
F 3 HOH B 25 325 100 HOH HOH . 
F 3 HOH B 26 326 9 HOH HOH . 
F 3 HOH B 27 327 26 HOH HOH . 
F 3 HOH B 28 328 1 HOH HOH . 
F 3 HOH B 29 329 33 HOH HOH . 
F 3 HOH B 30 330 22 HOH HOH . 
F 3 HOH B 31 331 20 HOH HOH . 
F 3 HOH B 32 332 82 HOH HOH . 
F 3 HOH B 33 333 31 HOH HOH . 
F 3 HOH B 34 334 17 HOH HOH . 
F 3 HOH B 35 335 43 HOH HOH . 
F 3 HOH B 36 336 134 HOH HOH . 
F 3 HOH B 37 337 23 HOH HOH . 
F 3 HOH B 38 338 34 HOH HOH . 
F 3 HOH B 39 339 79 HOH HOH . 
F 3 HOH B 40 340 16 HOH HOH . 
F 3 HOH B 41 341 94 HOH HOH . 
F 3 HOH B 42 342 56 HOH HOH . 
F 3 HOH B 43 343 50 HOH HOH . 
F 3 HOH B 44 344 41 HOH HOH . 
F 3 HOH B 45 345 11 HOH HOH . 
F 3 HOH B 46 346 120 HOH HOH . 
F 3 HOH B 47 347 106 HOH HOH . 
F 3 HOH B 48 348 76 HOH HOH . 
F 3 HOH B 49 349 47 HOH HOH . 
F 3 HOH B 50 350 80 HOH HOH . 
F 3 HOH B 51 351 108 HOH HOH . 
F 3 HOH B 52 352 49 HOH HOH . 
F 3 HOH B 53 353 75 HOH HOH . 
F 3 HOH B 54 354 88 HOH HOH . 
F 3 HOH B 55 355 113 HOH HOH . 
F 3 HOH B 56 356 123 HOH HOH . 
F 3 HOH B 57 357 60 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 XBS . . . D 2 21.308 83.571 74.412 0.5 22.91 ? C01 XBS 200 B 1 
HETATM 2 C C02 XBS . . . D 2 21.451 84.944 74.286 0.5 21.08 ? C02 XBS 200 B 1 
HETATM 3 C C03 XBS . . . D 2 21.705 85.512 73.045 0.5 21.52 ? C03 XBS 200 B 1 
HETATM 4 C C04 XBS . . . D 2 21.797 84.695 71.93 0.5 26.13 ? C04 XBS 200 B 1 
HETATM 5 C C05 XBS . . . D 2 21.672 83.317 72.066 0.5 24.04 ? C05 XBS 200 B 1 
HETATM 6 C C06 XBS . . . D 2 21.421 82.752 73.305 0.5 20.04 ? C06 XBS 200 B 1 
HETATM 7 C C07 XBS . . . D 2 22.096 85.245 70.552 0.5 25.7 ? C07 XBS 200 B 1 
HETATM 8 C C08 XBS . . . D 2 21.349 85.188 69.434 0.5 25.23 ? C08 XBS 200 B 1 
HETATM 9 C C09 XBS . . . D 2 21.846 85.743 68.115 0.5 25.6 ? C09 XBS 200 B 1 
HETATM 10 C C10 XBS . . . D 2 21.46 85.168 66.912 0.5 26.99 ? C10 XBS 200 B 1 
HETATM 11 C C11 XBS . . . D 2 21.953 85.664 65.712 0.5 30.09 ? C11 XBS 200 B 1 
HETATM 12 C C12 XBS . . . D 2 22.837 86.728 65.717 0.5 30.55 ? C12 XBS 200 B 1 
HETATM 13 C C13 XBS . . . D 2 23.235 87.289 66.916 0.5 27.83 ? C13 XBS 200 B 1 
HETATM 14 C C14 XBS . . . D 2 22.748 86.795 68.114 0.5 27.11 ? C14 XBS 200 B 1 
HETATM 15 C C15 XBS . . . D 2 21.338 85.821 75.517 0.5 22.34 ? C15 XBS 200 B 1 
HETATM 16 O O01 XBS . . . D 2 22.635 88.069 63.396 0.5 37.14 ? O01 XBS 200 B 1 
HETATM 17 O O02 XBS . . . D 2 24.826 87.087 64.002 0.5 40.61 ? O02 XBS 200 B 1 
HETATM 18 O O03 XBS . . . D 2 21.089 85.311 76.644 0.5 23.15 ? O03 XBS 200 B 1 
HETATM 19 O O04 XBS . . . D 2 21.513 87.064 75.428 0.5 24.9 ? O04 XBS 200 B 1 
HETATM 20 B B01 XBS . . . D 2 23.448 87.328 64.306 0.5 32.51 ? B01 XBS 200 B 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           51 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           731 
_model_server_stats.encode_time_ms          42 
_model_server_stats.element_count           20 
#