data_5U4E # _model_server_result.job_id E-_i7oY5uXVfqpNViUNqzg _model_server_result.datetime_utc '2024-11-09 02:30:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u4e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":200}' # _entry.id 5U4E # _exptl.entry_id 5U4E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.517 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[(E)-2-(4-borono-2-chlorophenyl)ethenyl]benzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5U4E _cell.length_a 43.029 _cell.length_b 85.861 _cell.length_c 63.831 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U4E _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_755 -x+2,-y,z -1 0 0 0 -1 0 0 0 1 86.058 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C15 H12 B Cl O4' _chem_comp.formula_weight 302.517 _chem_comp.id XLB _chem_comp.mon_nstd_flag . _chem_comp.name '3-[(E)-2-(4-borono-2-chlorophenyl)ethenyl]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O03 C15 XLB doub 357 n n C15 O04 XLB sing 358 n n C15 C02 XLB sing 359 n n C01 C02 XLB doub 360 n y C01 C06 XLB sing 361 n y C02 C03 XLB sing 362 n y C06 C05 XLB doub 363 n y C03 C04 XLB doub 364 n y C05 C04 XLB sing 365 n y C04 C07 XLB sing 366 n n C07 C08 XLB doub 367 e n C08 C09 XLB sing 368 n n CL1 C10 XLB sing 369 n n C09 C10 XLB doub 370 n y C09 C14 XLB sing 371 n y C10 C11 XLB sing 372 n y C14 C13 XLB doub 373 n y C11 C12 XLB doub 374 n y C13 C12 XLB sing 375 n y C12 B01 XLB sing 376 n n B01 O01 XLB sing 377 n n B01 O02 XLB sing 378 n n C01 H1 XLB sing 379 n n C03 H2 XLB sing 380 n n C05 H3 XLB sing 381 n n C06 H4 XLB sing 382 n n C07 H5 XLB sing 383 n n C08 H6 XLB sing 384 n n C11 H7 XLB sing 385 n n C13 H8 XLB sing 386 n n C14 H9 XLB sing 387 n n O01 H10 XLB sing 388 n n O02 H11 XLB sing 389 n n O04 H12 XLB sing 390 n n # _atom_sites.entry_id 5U4E _atom_sites.fract_transf_matrix[1][1] 0.02324 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011647 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XLB A 1 200 200 XLB XLB . D 2 XLB B 1 200 200 XLB XLB . E 3 HOH A 1 301 105 HOH HOH . E 3 HOH A 2 302 144 HOH HOH . E 3 HOH A 3 303 145 HOH HOH . E 3 HOH A 4 304 94 HOH HOH . E 3 HOH A 5 305 79 HOH HOH . E 3 HOH A 6 306 149 HOH HOH . E 3 HOH A 7 307 63 HOH HOH . E 3 HOH A 8 308 40 HOH HOH . E 3 HOH A 9 309 148 HOH HOH . E 3 HOH A 10 310 4 HOH HOH . E 3 HOH A 11 311 86 HOH HOH . E 3 HOH A 12 312 91 HOH HOH . E 3 HOH A 13 313 100 HOH HOH . E 3 HOH A 14 314 165 HOH HOH . E 3 HOH A 15 315 29 HOH HOH . E 3 HOH A 16 316 34 HOH HOH . E 3 HOH A 17 317 82 HOH HOH . E 3 HOH A 18 318 95 HOH HOH . E 3 HOH A 19 319 8 HOH HOH . E 3 HOH A 20 320 81 HOH HOH . E 3 HOH A 21 321 111 HOH HOH . E 3 HOH A 22 322 51 HOH HOH . E 3 HOH A 23 323 73 HOH HOH . E 3 HOH A 24 324 14 HOH HOH . E 3 HOH A 25 325 157 HOH HOH . E 3 HOH A 26 326 53 HOH HOH . E 3 HOH A 27 327 152 HOH HOH . E 3 HOH A 28 328 150 HOH HOH . E 3 HOH A 29 329 18 HOH HOH . E 3 HOH A 30 330 24 HOH HOH . E 3 HOH A 31 331 45 HOH HOH . E 3 HOH A 32 332 47 HOH HOH . E 3 HOH A 33 333 16 HOH HOH . E 3 HOH A 34 334 121 HOH HOH . E 3 HOH A 35 335 87 HOH HOH . E 3 HOH A 36 336 10 HOH HOH . E 3 HOH A 37 337 138 HOH HOH . E 3 HOH A 38 338 41 HOH HOH . E 3 HOH A 39 339 102 HOH HOH . E 3 HOH A 40 340 89 HOH HOH . E 3 HOH A 41 341 2 HOH HOH . E 3 HOH A 42 342 7 HOH HOH . E 3 HOH A 43 343 61 HOH HOH . E 3 HOH A 44 344 78 HOH HOH . E 3 HOH A 45 345 46 HOH HOH . E 3 HOH A 46 346 31 HOH HOH . E 3 HOH A 47 347 5 HOH HOH . E 3 HOH A 48 348 162 HOH HOH . E 3 HOH A 49 349 114 HOH HOH . E 3 HOH A 50 350 146 HOH HOH . E 3 HOH A 51 351 15 HOH HOH . E 3 HOH A 52 352 122 HOH HOH . E 3 HOH A 53 353 96 HOH HOH . E 3 HOH A 54 354 74 HOH HOH . E 3 HOH A 55 355 42 HOH HOH . E 3 HOH A 56 356 55 HOH HOH . E 3 HOH A 57 357 163 HOH HOH . E 3 HOH A 58 358 58 HOH HOH . E 3 HOH A 59 359 76 HOH HOH . E 3 HOH A 60 360 30 HOH HOH . E 3 HOH A 61 361 50 HOH HOH . E 3 HOH A 62 362 19 HOH HOH . E 3 HOH A 63 363 167 HOH HOH . E 3 HOH A 64 364 59 HOH HOH . E 3 HOH A 65 365 83 HOH HOH . E 3 HOH A 66 366 22 HOH HOH . E 3 HOH A 67 367 117 HOH HOH . E 3 HOH A 68 368 156 HOH HOH . E 3 HOH A 69 369 107 HOH HOH . E 3 HOH A 70 370 71 HOH HOH . E 3 HOH A 71 371 49 HOH HOH . E 3 HOH A 72 372 103 HOH HOH . E 3 HOH A 73 373 17 HOH HOH . E 3 HOH A 74 374 67 HOH HOH . E 3 HOH A 75 375 120 HOH HOH . E 3 HOH A 76 376 39 HOH HOH . E 3 HOH A 77 377 161 HOH HOH . E 3 HOH A 78 378 56 HOH HOH . E 3 HOH A 79 379 160 HOH HOH . E 3 HOH A 80 380 143 HOH HOH . E 3 HOH A 81 381 106 HOH HOH . E 3 HOH A 82 382 119 HOH HOH . E 3 HOH A 83 383 158 HOH HOH . E 3 HOH A 84 384 26 HOH HOH . E 3 HOH A 85 385 136 HOH HOH . E 3 HOH A 86 386 116 HOH HOH . E 3 HOH A 87 387 118 HOH HOH . E 3 HOH A 88 388 151 HOH HOH . E 3 HOH A 89 389 44 HOH HOH . E 3 HOH A 90 390 93 HOH HOH . E 3 HOH A 91 391 72 HOH HOH . E 3 HOH A 92 392 147 HOH HOH . E 3 HOH A 93 393 166 HOH HOH . E 3 HOH A 94 394 88 HOH HOH . E 3 HOH A 95 395 137 HOH HOH . E 3 HOH A 96 396 135 HOH HOH . E 3 HOH A 97 397 141 HOH HOH . F 3 HOH B 1 301 153 HOH HOH . F 3 HOH B 2 302 124 HOH HOH . F 3 HOH B 3 303 125 HOH HOH . F 3 HOH B 4 304 90 HOH HOH . F 3 HOH B 5 305 104 HOH HOH . F 3 HOH B 6 306 159 HOH HOH . F 3 HOH B 7 307 99 HOH HOH . F 3 HOH B 8 308 110 HOH HOH . F 3 HOH B 9 309 164 HOH HOH . F 3 HOH B 10 310 97 HOH HOH . F 3 HOH B 11 311 38 HOH HOH . F 3 HOH B 12 312 20 HOH HOH . F 3 HOH B 13 313 75 HOH HOH . F 3 HOH B 14 314 13 HOH HOH . F 3 HOH B 15 315 108 HOH HOH . F 3 HOH B 16 316 3 HOH HOH . F 3 HOH B 17 317 127 HOH HOH . F 3 HOH B 18 318 43 HOH HOH . F 3 HOH B 19 319 84 HOH HOH . F 3 HOH B 20 320 80 HOH HOH . F 3 HOH B 21 321 11 HOH HOH . F 3 HOH B 22 322 65 HOH HOH . F 3 HOH B 23 323 23 HOH HOH . F 3 HOH B 24 324 112 HOH HOH . F 3 HOH B 25 325 32 HOH HOH . F 3 HOH B 26 326 25 HOH HOH . F 3 HOH B 27 327 113 HOH HOH . F 3 HOH B 28 328 62 HOH HOH . F 3 HOH B 29 329 132 HOH HOH . F 3 HOH B 30 330 92 HOH HOH . F 3 HOH B 31 331 33 HOH HOH . F 3 HOH B 32 332 36 HOH HOH . F 3 HOH B 33 333 52 HOH HOH . F 3 HOH B 34 334 28 HOH HOH . F 3 HOH B 35 335 70 HOH HOH . F 3 HOH B 36 336 35 HOH HOH . F 3 HOH B 37 337 9 HOH HOH . F 3 HOH B 38 338 1 HOH HOH . F 3 HOH B 39 339 37 HOH HOH . F 3 HOH B 40 340 48 HOH HOH . F 3 HOH B 41 341 21 HOH HOH . F 3 HOH B 42 342 101 HOH HOH . F 3 HOH B 43 343 129 HOH HOH . F 3 HOH B 44 344 27 HOH HOH . F 3 HOH B 45 345 98 HOH HOH . F 3 HOH B 46 346 66 HOH HOH . F 3 HOH B 47 347 60 HOH HOH . F 3 HOH B 48 348 85 HOH HOH . F 3 HOH B 49 349 54 HOH HOH . F 3 HOH B 50 350 12 HOH HOH . F 3 HOH B 51 351 109 HOH HOH . F 3 HOH B 52 352 57 HOH HOH . F 3 HOH B 53 353 69 HOH HOH . F 3 HOH B 54 354 126 HOH HOH . F 3 HOH B 55 355 128 HOH HOH . F 3 HOH B 56 356 77 HOH HOH . F 3 HOH B 57 357 115 HOH HOH . F 3 HOH B 58 358 64 HOH HOH . F 3 HOH B 59 359 140 HOH HOH . F 3 HOH B 60 360 6 HOH HOH . F 3 HOH B 61 361 133 HOH HOH . F 3 HOH B 62 362 154 HOH HOH . F 3 HOH B 63 363 134 HOH HOH . F 3 HOH B 64 364 131 HOH HOH . F 3 HOH B 65 365 142 HOH HOH . F 3 HOH B 66 366 169 HOH HOH . F 3 HOH B 67 367 123 HOH HOH . F 3 HOH B 68 368 155 HOH HOH . F 3 HOH B 69 369 168 HOH HOH . F 3 HOH B 70 370 130 HOH HOH . F 3 HOH B 71 371 68 HOH HOH . F 3 HOH B 72 372 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 XLB . A . D 2 42.977 -1.687 10.48 0.25 18.43 ? C01 XLB 200 B 1 HETATM 2 C C01 XLB . B . D 2 43.008 -1.681 10.541 0.25 18.44 ? C01 XLB 200 B 1 HETATM 3 C C02 XLB . A . D 2 43.148 -0.324 10.322 0.25 20.08 ? C02 XLB 200 B 1 HETATM 4 C C02 XLB . B . D 2 43.205 -0.316 10.421 0.25 20.07 ? C02 XLB 200 B 1 HETATM 5 C C03 XLB . A . D 2 43.404 0.211 9.063 0.25 19.38 ? C03 XLB 200 B 1 HETATM 6 C C03 XLB . B . D 2 43.478 0.237 9.18 0.25 19.33 ? C03 XLB 200 B 1 HETATM 7 C C04 XLB . A . D 2 43.466 -0.64 7.965 0.25 20.72 ? C04 XLB 200 B 1 HETATM 8 C C04 XLB . B . D 2 43.55 -0.581 8.063 0.25 20.72 ? C04 XLB 200 B 1 HETATM 9 C C05 XLB . A . D 2 43.307 -2.007 8.136 0.25 19.3 ? C05 XLB 200 B 1 HETATM 10 C C05 XLB . B . D 2 43.353 -1.951 8.184 0.25 19.35 ? C05 XLB 200 B 1 HETATM 11 C C06 XLB . A . D 2 43.057 -2.533 9.389 0.25 18.52 ? C06 XLB 200 B 1 HETATM 12 C C06 XLB . B . D 2 43.083 -2.502 9.426 0.25 18.52 ? C06 XLB 200 B 1 HETATM 13 C C07 XLB . A . D 2 43.768 -0.16 6.56 0.25 21.48 ? C07 XLB 200 B 1 HETATM 14 C C07 XLB . B . D 2 43.85 0.02 6.709 0.25 21.13 ? C07 XLB 200 B 1 HETATM 15 C C08 XLB . A . D 2 42.978 -0.15 5.469 0.25 23.21 ? C08 XLB 200 B 1 HETATM 16 C C08 XLB . B . D 2 43.155 -0.212 5.586 0.25 23.24 ? C08 XLB 200 B 1 HETATM 17 C C09 XLB . A . D 2 43.388 0.298 4.068 0.25 22.25 ? C09 XLB 200 B 1 HETATM 18 C C09 XLB . B . D 2 43.453 0.38 4.223 0.25 22.33 ? C09 XLB 200 B 1 HETATM 19 C C10 XLB . A . D 2 44.315 1.306 3.802 0.25 23.22 ? C10 XLB 200 B 1 HETATM 20 C C10 XLB . B . D 2 42.943 -0.217 3.079 0.25 21.99 ? C10 XLB 200 B 1 HETATM 21 C C11 XLB . A . D 2 44.649 1.635 2.501 0.25 22.15 ? C11 XLB 200 B 1 HETATM 22 C C11 XLB . B . D 2 43.219 0.322 1.835 0.25 22.2 ? C11 XLB 200 B 1 HETATM 23 C C12 XLB . A . D 2 44.077 0.965 1.441 0.25 22.02 ? C12 XLB 200 B 1 HETATM 24 C C12 XLB . B . D 2 44.002 1.459 1.725 0.25 21.87 ? C12 XLB 200 B 1 HETATM 25 C C13 XLB . A . D 2 43.162 -0.046 1.689 0.25 22.17 ? C13 XLB 200 B 1 HETATM 26 C C13 XLB . B . D 2 44.515 2.058 2.865 0.25 23.63 ? C13 XLB 200 B 1 HETATM 27 C C14 XLB . A . D 2 42.826 -0.379 2.996 0.25 21.98 ? C14 XLB 200 B 1 HETATM 28 C C14 XLB . B . D 2 44.24 1.518 4.114 0.25 22.75 ? C14 XLB 200 B 1 HETATM 29 C C15 XLB . A . D 2 43.054 0.556 11.55 0.25 18.02 ? C15 XLB 200 B 1 HETATM 30 C C15 XLB . B . D 2 43.124 0.568 11.647 0.25 17.98 ? C15 XLB 200 B 1 HETATM 31 O O01 XLB . A . D 2 45.869 1.221 -0.513 0.25 19.36 ? O01 XLB 200 B 1 HETATM 32 O O01 XLB . B . D 2 43.573 1.63 -0.903 0.25 21.63 ? O01 XLB 200 B 1 HETATM 33 O O02 XLB . A . D 2 43.555 1.959 -0.984 0.25 21.84 ? O02 XLB 200 B 1 HETATM 34 O O02 XLB . B . D 2 45.314 3.084 0.063 0.25 19.84 ? O02 XLB 200 B 1 HETATM 35 O O03 XLB . A . D 2 43.076 1.807 11.449 0.25 20.36 ? O03 XLB 200 B 1 HETATM 36 O O03 XLB . B . D 2 43.168 1.819 11.53 0.25 20.35 ? O03 XLB 200 B 1 HETATM 37 O O04 XLB . A . D 2 42.954 0.024 12.686 0.25 19.54 ? O04 XLB 200 B 1 HETATM 38 O O04 XLB . B . D 2 43.012 0.049 12.788 0.25 19.53 ? O04 XLB 200 B 1 HETATM 39 CL CL1 XLB . A . D 2 45.102 2.223 5.044 0.25 24.11 ? CL1 XLB 200 B 1 HETATM 40 CL CL1 XLB . B . D 2 41.955 -1.647 3.179 0.25 26.79 ? CL1 XLB 200 B 1 HETATM 41 B B01 XLB . A . D 2 44.515 1.399 -0.091 0.25 23.64 ? B01 XLB 200 B 1 HETATM 42 B B01 XLB . B . D 2 44.313 2.085 0.23 0.25 23.45 ? B01 XLB 200 B 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 42 #