data_5U4U # _model_server_result.job_id 9zb6ZQttIglHU4ahlRt79A _model_server_result.datetime_utc '2024-11-09 02:26:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u4u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 5U4U # _exptl.entry_id 5U4U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5U4U _cell.length_a 62.937 _cell.length_b 62.937 _cell.length_c 161.017 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U4U _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 2 A SER 586 1_555 F NA NA . A NA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc2 A O ASP 3 A ASP 587 1_555 F NA NA . A NA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc3 A O VAL 6 A VAL 590 1_555 F NA NA . A NA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc4 A OG SER 47 A SER 631 1_555 E NA NA . A NA 804 1_555 ? B ? ? ? ? ? ? ? ? ? ? 3.139 ? metalc ? metalc5 A O LEU 48 A LEU 632 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc6 B O7 MLI . A MLI 801 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc7 B O9 MLI . A MLI 801 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc8 C O6 MLI . A MLI 802 1_555 D NA NA . A NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc9 C O8 MLI . A MLI 802 1_555 E NA NA . A NA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc10 D NA NA . A NA 803 1_555 G O HOH . A HOH 957 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc11 E NA NA . A NA 804 1_555 G O HOH . A HOH 953 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? metalc ? metalc12 F NA NA . A NA 805 1_555 G O HOH . A HOH 955 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc13 F NA NA . A NA 805 1_555 G O HOH . A HOH 958 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc14 F NA NA . A NA 805 1_555 G O HOH . A HOH 964 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 237 n n C1 C3 MLI sing 238 n n C1 H11 MLI sing 239 n n C1 H12 MLI sing 240 n n C2 O6 MLI doub 241 n n C2 O7 MLI sing 242 n n C3 O8 MLI doub 243 n n C3 O9 MLI sing 244 n n # _atom_sites.entry_id 5U4U _atom_sites.fract_transf_matrix[1][1] 0.015889 _atom_sites.fract_transf_matrix[1][2] 0.009173 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018347 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006211 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLI A 1 801 1 MLI MLI . C 2 MLI A 1 802 2 MLI MLI . D 3 NA A 1 803 1 NA NA . E 3 NA A 1 804 2 NA NA . F 3 NA A 1 805 3 NA NA . G 4 HOH A 1 901 62 HOH HOH . G 4 HOH A 2 902 53 HOH HOH . G 4 HOH A 3 903 71 HOH HOH . G 4 HOH A 4 904 17 HOH HOH . G 4 HOH A 5 905 80 HOH HOH . G 4 HOH A 6 906 4 HOH HOH . G 4 HOH A 7 907 7 HOH HOH . G 4 HOH A 8 908 61 HOH HOH . G 4 HOH A 9 909 22 HOH HOH . G 4 HOH A 10 910 1 HOH HOH . G 4 HOH A 11 911 32 HOH HOH . G 4 HOH A 12 912 25 HOH HOH . G 4 HOH A 13 913 54 HOH HOH . G 4 HOH A 14 914 23 HOH HOH . G 4 HOH A 15 915 2 HOH HOH . G 4 HOH A 16 916 19 HOH HOH . G 4 HOH A 17 917 40 HOH HOH . G 4 HOH A 18 918 73 HOH HOH . G 4 HOH A 19 919 9 HOH HOH . G 4 HOH A 20 920 43 HOH HOH . G 4 HOH A 21 921 34 HOH HOH . G 4 HOH A 22 922 20 HOH HOH . G 4 HOH A 23 923 14 HOH HOH . G 4 HOH A 24 924 38 HOH HOH . G 4 HOH A 25 925 52 HOH HOH . G 4 HOH A 26 926 16 HOH HOH . G 4 HOH A 27 927 6 HOH HOH . G 4 HOH A 28 928 10 HOH HOH . G 4 HOH A 29 929 35 HOH HOH . G 4 HOH A 30 930 42 HOH HOH . G 4 HOH A 31 931 12 HOH HOH . G 4 HOH A 32 932 33 HOH HOH . G 4 HOH A 33 933 5 HOH HOH . G 4 HOH A 34 934 45 HOH HOH . G 4 HOH A 35 935 27 HOH HOH . G 4 HOH A 36 936 30 HOH HOH . G 4 HOH A 37 937 3 HOH HOH . G 4 HOH A 38 938 28 HOH HOH . G 4 HOH A 39 939 56 HOH HOH . G 4 HOH A 40 940 8 HOH HOH . G 4 HOH A 41 941 50 HOH HOH . G 4 HOH A 42 942 29 HOH HOH . G 4 HOH A 43 943 26 HOH HOH . G 4 HOH A 44 944 67 HOH HOH . G 4 HOH A 45 945 69 HOH HOH . G 4 HOH A 46 946 65 HOH HOH . G 4 HOH A 47 947 11 HOH HOH . G 4 HOH A 48 948 18 HOH HOH . G 4 HOH A 49 949 37 HOH HOH . G 4 HOH A 50 950 48 HOH HOH . G 4 HOH A 51 951 79 HOH HOH . G 4 HOH A 52 952 21 HOH HOH . G 4 HOH A 53 953 39 HOH HOH . G 4 HOH A 54 954 63 HOH HOH . G 4 HOH A 55 955 59 HOH HOH . G 4 HOH A 56 956 46 HOH HOH . G 4 HOH A 57 957 13 HOH HOH . G 4 HOH A 58 958 77 HOH HOH . G 4 HOH A 59 959 60 HOH HOH . G 4 HOH A 60 960 47 HOH HOH . G 4 HOH A 61 961 66 HOH HOH . G 4 HOH A 62 962 75 HOH HOH . G 4 HOH A 63 963 36 HOH HOH . G 4 HOH A 64 964 31 HOH HOH . G 4 HOH A 65 965 68 HOH HOH . G 4 HOH A 66 966 41 HOH HOH . G 4 HOH A 67 967 55 HOH HOH . G 4 HOH A 68 968 78 HOH HOH . G 4 HOH A 69 969 15 HOH HOH . G 4 HOH A 70 970 74 HOH HOH . G 4 HOH A 71 971 72 HOH HOH . G 4 HOH A 72 972 49 HOH HOH . G 4 HOH A 73 973 70 HOH HOH . G 4 HOH A 74 974 24 HOH HOH . G 4 HOH A 75 975 57 HOH HOH . G 4 HOH A 76 976 81 HOH HOH . G 4 HOH A 77 977 58 HOH HOH . G 4 HOH A 78 978 76 HOH HOH . G 4 HOH A 79 979 64 HOH HOH . G 4 HOH A 80 980 51 HOH HOH . G 4 HOH A 81 981 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . C 2 -17.512 25.822 1.068 1 46.23 ? C1 MLI 802 A 1 HETATM 2 C C2 MLI . . . C 2 -18.718 25.845 0.138 1 43.37 ? C2 MLI 802 A 1 HETATM 3 C C3 MLI . . . C 2 -16.245 25.486 0.284 1 57.42 ? C3 MLI 802 A 1 HETATM 4 O O6 MLI . . . C 2 -18.586 26.206 -1.063 1 40 ? O6 MLI 802 A 1 HETATM 5 O O7 MLI . . . C 2 -19.847 25.513 0.576 1 43.56 ? O7 MLI 802 A 1 HETATM 6 O O8 MLI . . . C 2 -15.599 26.4 -0.298 1 61.25 ? O8 MLI 802 A 1 HETATM 7 O O9 MLI . . . C 2 -15.848 24.289 0.227 1 63.98 ? O9 MLI 802 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 7 #