data_5U55 # _model_server_result.job_id ZcNO0hV2vgcEt3CmE9nsCQ _model_server_result.datetime_utc '2024-12-26 12:09:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u55 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 5U55 # _exptl.entry_id 5U55 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5U55 _cell.length_a 56.29 _cell.length_b 111.005 _cell.length_c 128.887 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U55 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 128 A HIS 128 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc2 A OE1 GLU 132 A GLU 132 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc3 A NE2 HIS 171 A HIS 171 1_555 E MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc4 E MN MN . A MN 301 1_555 F O6 S0H . A S0H 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc5 E MN MN . A MN 301 1_555 F O13 S0H . A S0H 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc6 E MN MN . A MN 301 1_555 M O HOH . A HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc7 B NE2 HIS 128 B HIS 128 1_555 G MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc8 B OE1 GLU 132 B GLU 132 1_555 G MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc9 B NE2 HIS 171 B HIS 171 1_555 G MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc10 G MN MN . B MN 301 1_555 H O15 S0H . B S0H 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc11 G MN MN . B MN 301 1_555 H O6 S0H . B S0H 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc12 G MN MN . B MN 301 1_555 N O HOH . B HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc13 C NE2 HIS 128 C HIS 128 1_555 I MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc14 C OE1 GLU 132 C GLU 132 1_555 I MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc15 C NE2 HIS 171 C HIS 171 1_555 I MN MN . C MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc16 I MN MN . C MN 301 1_555 J O13 S0H . C S0H 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc17 I MN MN . C MN 301 1_555 J O6 S0H . C S0H 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.843 ? metalc ? metalc18 I MN MN . C MN 301 1_555 O O HOH . C HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc19 D NE2 HIS 128 D HIS 128 1_555 K MN MN . D MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc20 D OE2 GLU 132 D GLU 132 1_555 K MN MN . D MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc21 D NE2 HIS 171 D HIS 171 1_555 K MN MN . D MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc22 K MN MN . D MN 301 1_555 L O14 S0H . D S0H 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc23 K MN MN . D MN 301 1_555 L O6 S0H . D S0H 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5U55 _atom_sites.fract_transf_matrix[1][1] 0.017765 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009009 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007759 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MN A 1 301 301 MN MN . F 3 S0H A 1 302 302 S0H S0H . G 2 MN B 1 301 301 MN MN . H 3 S0H B 1 302 302 S0H S0H . I 2 MN C 1 301 301 MN MN . J 3 S0H C 1 302 302 S0H S0H . K 2 MN D 1 301 301 MN MN . L 3 S0H D 1 302 302 S0H S0H . M 4 HOH A 1 401 150 HOH HOH . M 4 HOH A 2 402 53 HOH HOH . M 4 HOH A 3 403 228 HOH HOH . M 4 HOH A 4 404 231 HOH HOH . M 4 HOH A 5 405 42 HOH HOH . M 4 HOH A 6 406 71 HOH HOH . M 4 HOH A 7 407 49 HOH HOH . M 4 HOH A 8 408 103 HOH HOH . M 4 HOH A 9 409 12 HOH HOH . M 4 HOH A 10 410 10 HOH HOH . M 4 HOH A 11 411 149 HOH HOH . M 4 HOH A 12 412 151 HOH HOH . M 4 HOH A 13 413 65 HOH HOH . M 4 HOH A 14 414 206 HOH HOH . M 4 HOH A 15 415 23 HOH HOH . M 4 HOH A 16 416 118 HOH HOH . M 4 HOH A 17 417 173 HOH HOH . M 4 HOH A 18 418 51 HOH HOH . M 4 HOH A 19 419 220 HOH HOH . M 4 HOH A 20 420 100 HOH HOH . M 4 HOH A 21 421 229 HOH HOH . M 4 HOH A 22 422 93 HOH HOH . M 4 HOH A 23 423 99 HOH HOH . M 4 HOH A 24 424 75 HOH HOH . M 4 HOH A 25 425 52 HOH HOH . M 4 HOH A 26 426 17 HOH HOH . M 4 HOH A 27 427 154 HOH HOH . M 4 HOH A 28 428 230 HOH HOH . M 4 HOH A 29 429 105 HOH HOH . M 4 HOH A 30 430 86 HOH HOH . M 4 HOH A 31 431 85 HOH HOH . M 4 HOH A 32 432 15 HOH HOH . M 4 HOH A 33 433 95 HOH HOH . M 4 HOH A 34 434 82 HOH HOH . M 4 HOH A 35 435 131 HOH HOH . M 4 HOH A 36 436 41 HOH HOH . M 4 HOH A 37 437 167 HOH HOH . M 4 HOH A 38 438 153 HOH HOH . M 4 HOH A 39 439 109 HOH HOH . M 4 HOH A 40 440 216 HOH HOH . M 4 HOH A 41 441 232 HOH HOH . M 4 HOH A 42 442 227 HOH HOH . M 4 HOH A 43 443 182 HOH HOH . M 4 HOH A 44 444 168 HOH HOH . M 4 HOH A 45 445 159 HOH HOH . M 4 HOH A 46 446 143 HOH HOH . M 4 HOH A 47 447 201 HOH HOH . M 4 HOH A 48 448 66 HOH HOH . M 4 HOH A 49 449 181 HOH HOH . M 4 HOH A 50 450 177 HOH HOH . M 4 HOH A 51 451 204 HOH HOH . M 4 HOH A 52 452 145 HOH HOH . M 4 HOH A 53 453 189 HOH HOH . M 4 HOH A 54 454 207 HOH HOH . N 4 HOH B 1 401 54 HOH HOH . N 4 HOH B 2 402 212 HOH HOH . N 4 HOH B 3 403 63 HOH HOH . N 4 HOH B 4 404 27 HOH HOH . N 4 HOH B 5 405 55 HOH HOH . N 4 HOH B 6 406 163 HOH HOH . N 4 HOH B 7 407 222 HOH HOH . N 4 HOH B 8 408 32 HOH HOH . N 4 HOH B 9 409 114 HOH HOH . N 4 HOH B 10 410 208 HOH HOH . N 4 HOH B 11 411 171 HOH HOH . N 4 HOH B 12 412 115 HOH HOH . N 4 HOH B 13 413 68 HOH HOH . N 4 HOH B 14 414 192 HOH HOH . N 4 HOH B 15 415 199 HOH HOH . N 4 HOH B 16 416 165 HOH HOH . N 4 HOH B 17 417 35 HOH HOH . N 4 HOH B 18 418 144 HOH HOH . N 4 HOH B 19 419 72 HOH HOH . N 4 HOH B 20 420 34 HOH HOH . N 4 HOH B 21 421 80 HOH HOH . N 4 HOH B 22 422 214 HOH HOH . N 4 HOH B 23 423 26 HOH HOH . N 4 HOH B 24 424 132 HOH HOH . N 4 HOH B 25 425 59 HOH HOH . N 4 HOH B 26 426 226 HOH HOH . N 4 HOH B 27 427 174 HOH HOH . N 4 HOH B 28 428 162 HOH HOH . N 4 HOH B 29 429 22 HOH HOH . N 4 HOH B 30 430 8 HOH HOH . N 4 HOH B 31 431 123 HOH HOH . N 4 HOH B 32 432 152 HOH HOH . N 4 HOH B 33 433 91 HOH HOH . N 4 HOH B 34 434 225 HOH HOH . N 4 HOH B 35 435 37 HOH HOH . N 4 HOH B 36 436 211 HOH HOH . N 4 HOH B 37 437 18 HOH HOH . N 4 HOH B 38 438 74 HOH HOH . N 4 HOH B 39 439 70 HOH HOH . N 4 HOH B 40 440 112 HOH HOH . N 4 HOH B 41 441 38 HOH HOH . N 4 HOH B 42 442 108 HOH HOH . N 4 HOH B 43 443 203 HOH HOH . N 4 HOH B 44 444 224 HOH HOH . N 4 HOH B 45 445 76 HOH HOH . N 4 HOH B 46 446 84 HOH HOH . N 4 HOH B 47 447 107 HOH HOH . N 4 HOH B 48 448 97 HOH HOH . N 4 HOH B 49 449 134 HOH HOH . N 4 HOH B 50 450 90 HOH HOH . N 4 HOH B 51 451 96 HOH HOH . N 4 HOH B 52 452 77 HOH HOH . N 4 HOH B 53 453 9 HOH HOH . N 4 HOH B 54 454 78 HOH HOH . N 4 HOH B 55 455 44 HOH HOH . N 4 HOH B 56 456 106 HOH HOH . N 4 HOH B 57 457 223 HOH HOH . N 4 HOH B 58 458 219 HOH HOH . N 4 HOH B 59 459 98 HOH HOH . N 4 HOH B 60 460 155 HOH HOH . N 4 HOH B 61 461 111 HOH HOH . N 4 HOH B 62 462 161 HOH HOH . N 4 HOH B 63 463 215 HOH HOH . N 4 HOH B 64 464 166 HOH HOH . O 4 HOH C 1 401 57 HOH HOH . O 4 HOH C 2 402 33 HOH HOH . O 4 HOH C 3 403 28 HOH HOH . O 4 HOH C 4 404 45 HOH HOH . O 4 HOH C 5 405 188 HOH HOH . O 4 HOH C 6 406 25 HOH HOH . O 4 HOH C 7 407 180 HOH HOH . O 4 HOH C 8 408 122 HOH HOH . O 4 HOH C 9 409 116 HOH HOH . O 4 HOH C 10 410 135 HOH HOH . O 4 HOH C 11 411 31 HOH HOH . O 4 HOH C 12 412 81 HOH HOH . O 4 HOH C 13 413 234 HOH HOH . O 4 HOH C 14 414 129 HOH HOH . O 4 HOH C 15 415 148 HOH HOH . O 4 HOH C 16 416 4 HOH HOH . O 4 HOH C 17 417 62 HOH HOH . O 4 HOH C 18 418 185 HOH HOH . O 4 HOH C 19 419 218 HOH HOH . O 4 HOH C 20 420 13 HOH HOH . O 4 HOH C 21 421 60 HOH HOH . O 4 HOH C 22 422 14 HOH HOH . O 4 HOH C 23 423 40 HOH HOH . O 4 HOH C 24 424 29 HOH HOH . O 4 HOH C 25 425 221 HOH HOH . O 4 HOH C 26 426 176 HOH HOH . O 4 HOH C 27 427 47 HOH HOH . O 4 HOH C 28 428 138 HOH HOH . O 4 HOH C 29 429 130 HOH HOH . O 4 HOH C 30 430 48 HOH HOH . O 4 HOH C 31 431 127 HOH HOH . O 4 HOH C 32 432 92 HOH HOH . O 4 HOH C 33 433 79 HOH HOH . O 4 HOH C 34 434 113 HOH HOH . O 4 HOH C 35 435 217 HOH HOH . O 4 HOH C 36 436 11 HOH HOH . O 4 HOH C 37 437 133 HOH HOH . O 4 HOH C 38 438 158 HOH HOH . O 4 HOH C 39 439 21 HOH HOH . O 4 HOH C 40 440 19 HOH HOH . O 4 HOH C 41 441 139 HOH HOH . O 4 HOH C 42 442 64 HOH HOH . O 4 HOH C 43 443 137 HOH HOH . O 4 HOH C 44 444 88 HOH HOH . O 4 HOH C 45 445 164 HOH HOH . O 4 HOH C 46 446 146 HOH HOH . O 4 HOH C 47 447 89 HOH HOH . O 4 HOH C 48 448 179 HOH HOH . O 4 HOH C 49 449 67 HOH HOH . O 4 HOH C 50 450 16 HOH HOH . O 4 HOH C 51 451 125 HOH HOH . O 4 HOH C 52 452 233 HOH HOH . O 4 HOH C 53 453 175 HOH HOH . O 4 HOH C 54 454 121 HOH HOH . O 4 HOH C 55 455 126 HOH HOH . O 4 HOH C 56 456 110 HOH HOH . O 4 HOH C 57 457 210 HOH HOH . O 4 HOH C 58 458 183 HOH HOH . P 4 HOH D 1 401 193 HOH HOH . P 4 HOH D 2 402 24 HOH HOH . P 4 HOH D 3 403 195 HOH HOH . P 4 HOH D 4 404 30 HOH HOH . P 4 HOH D 5 405 46 HOH HOH . P 4 HOH D 6 406 160 HOH HOH . P 4 HOH D 7 407 237 HOH HOH . P 4 HOH D 8 408 136 HOH HOH . P 4 HOH D 9 409 87 HOH HOH . P 4 HOH D 10 410 83 HOH HOH . P 4 HOH D 11 411 101 HOH HOH . P 4 HOH D 12 412 6 HOH HOH . P 4 HOH D 13 413 73 HOH HOH . P 4 HOH D 14 414 56 HOH HOH . P 4 HOH D 15 415 117 HOH HOH . P 4 HOH D 16 416 20 HOH HOH . P 4 HOH D 17 417 3 HOH HOH . P 4 HOH D 18 418 36 HOH HOH . P 4 HOH D 19 419 197 HOH HOH . P 4 HOH D 20 420 39 HOH HOH . P 4 HOH D 21 421 124 HOH HOH . P 4 HOH D 22 422 236 HOH HOH . P 4 HOH D 23 423 186 HOH HOH . P 4 HOH D 24 424 104 HOH HOH . P 4 HOH D 25 425 119 HOH HOH . P 4 HOH D 26 426 102 HOH HOH . P 4 HOH D 27 427 187 HOH HOH . P 4 HOH D 28 428 7 HOH HOH . P 4 HOH D 29 429 61 HOH HOH . P 4 HOH D 30 430 202 HOH HOH . P 4 HOH D 31 431 196 HOH HOH . P 4 HOH D 32 432 178 HOH HOH . P 4 HOH D 33 433 94 HOH HOH . P 4 HOH D 34 434 235 HOH HOH . P 4 HOH D 35 435 50 HOH HOH . P 4 HOH D 36 436 170 HOH HOH . P 4 HOH D 37 437 169 HOH HOH . P 4 HOH D 38 438 43 HOH HOH . P 4 HOH D 39 439 198 HOH HOH . P 4 HOH D 40 440 172 HOH HOH . P 4 HOH D 41 441 69 HOH HOH . P 4 HOH D 42 442 140 HOH HOH . P 4 HOH D 43 443 120 HOH HOH . P 4 HOH D 44 444 200 HOH HOH . P 4 HOH D 45 445 58 HOH HOH . P 4 HOH D 46 446 156 HOH HOH . P 4 HOH D 47 447 128 HOH HOH . P 4 HOH D 48 448 157 HOH HOH . P 4 HOH D 49 449 213 HOH HOH . P 4 HOH D 50 450 194 HOH HOH . P 4 HOH D 51 451 147 HOH HOH . P 4 HOH D 52 452 184 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 10.834 _atom_site.Cartn_y 25.883 _atom_site.Cartn_z -20.292 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #