data_5U59
#
_model_server_result.job_id            6fhTmnh-pk8jyXf8F1xdnQ 
_model_server_result.datetime_utc      '2024-10-19 22:22:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5u59 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":103}' 
#
_entry.id    5U59 
#
_exptl.entry_id    5U59 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              192.124 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CITRIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.98 
_cell.angle_gamma         90 
_cell.entry_id            5U59 
_cell.length_a            36.326 
_cell.length_b            52.17 
_cell.length_c            25.581 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5U59 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -12.359879 0 49.646587 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ACE 1 A ACE 0 1_555 A N GLU 2 A GLU 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale2 A C LYS 7 A LYS 6 1_555 A N 7WJ 8 A 7WJ 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 A C 7WJ 8 A 7WJ 7 1_555 A N GLU 9 A GLU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 A C LEU 27 A LEU 26 1_555 A N 7WJ 28 A 7WJ 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale5 A C 7WJ 28 A 7WJ 27 1_555 A N LYS 29 A LYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
metalc ? metalc1 A NT2 7WJ 8 A 7WJ 7 1_555 B CU CU . A CU 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? 
metalc ? metalc2 A NU1 7WJ 8 A 7WJ 7 1_555 B CU CU . A CU 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc3 A NU3 7WJ 8 A 7WJ 7 1_555 B CU CU . A CU 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc4 A NT2 7WJ 28 A 7WJ 27 1_555 C CU CU . A CU 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
metalc ? metalc5 A NU1 7WJ 28 A 7WJ 27 1_555 C CU CU . A CU 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc6 A NU3 7WJ 28 A 7WJ 27 1_555 C CU CU . A CU 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc7 B CU CU . A CU 101 1_555 D O3 CIT . A CIT 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? 
metalc ? metalc8 C CU CU . A CU 102 1_555 E O2 CIT . A CIT 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? 
#
_chem_comp.formula           'C6 H8 O7' 
_chem_comp.formula_weight    192.124 
_chem_comp.id                CIT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CITRIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 CIT doub 84 n n 
C1 O2 CIT sing 85 n n 
C1 C2 CIT sing 86 n n 
O2 HO2 CIT sing 87 n n 
C2 C3 CIT sing 88 n n 
C2 H21 CIT sing 89 n n 
C2 H22 CIT sing 90 n n 
C3 O7 CIT sing 91 n n 
C3 C4 CIT sing 92 n n 
C3 C6 CIT sing 93 n n 
O7 HO7 CIT sing 94 n n 
C4 C5 CIT sing 95 n n 
C4 H41 CIT sing 96 n n 
C4 H42 CIT sing 97 n n 
C5 O3 CIT doub 98 n n 
C5 O4 CIT sing 99 n n 
O4 HO4 CIT sing 100 n n 
C6 O5 CIT doub 101 n n 
C6 O6 CIT sing 102 n n 
O6 HO6 CIT sing 103 n n 
#
_atom_sites.entry_id                     5U59 
_atom_sites.fract_transf_matrix[1][1]    0.027528 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006852 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019168 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.040284 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CU A 1 101 207 CU CU . 
C 2 CU A 1 102 227 CU CU . 
D 3 CIT A 1 103 1 CIT CIT . 
E 3 CIT A 1 104 2 CIT CIT . 
F 4 HOH A 1 201 16 HOH HOH . 
F 4 HOH A 2 202 29 HOH HOH . 
F 4 HOH A 3 203 21 HOH HOH . 
F 4 HOH A 4 204 11 HOH HOH . 
F 4 HOH A 5 205 22 HOH HOH . 
F 4 HOH A 6 206 6 HOH HOH . 
F 4 HOH A 7 207 13 HOH HOH . 
F 4 HOH A 8 208 10 HOH HOH . 
F 4 HOH A 9 209 1 HOH HOH . 
F 4 HOH A 10 210 12 HOH HOH . 
F 4 HOH A 11 211 3 HOH HOH . 
F 4 HOH A 12 212 5 HOH HOH . 
F 4 HOH A 13 213 20 HOH HOH . 
F 4 HOH A 14 214 2 HOH HOH . 
F 4 HOH A 15 215 24 HOH HOH . 
F 4 HOH A 16 216 4 HOH HOH . 
F 4 HOH A 17 217 18 HOH HOH . 
F 4 HOH A 18 218 23 HOH HOH . 
F 4 HOH A 19 219 19 HOH HOH . 
F 4 HOH A 20 220 26 HOH HOH . 
F 4 HOH A 21 221 25 HOH HOH . 
F 4 HOH A 22 222 7 HOH HOH . 
F 4 HOH A 23 223 14 HOH HOH . 
F 4 HOH A 24 224 28 HOH HOH . 
F 4 HOH A 25 225 27 HOH HOH . 
F 4 HOH A 26 226 8 HOH HOH . 
F 4 HOH A 27 227 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CIT . . . D 3 9.567 -10.735 35.242 1 66.79 ? C1 CIT 103 A 1 
HETATM 2 O O1 CIT . . . D 3 9.764 -10.344 34.072 1 68.87 ? O1 CIT 103 A 1 
HETATM 3 O O2 CIT . . . D 3 9.91 -9.999 36.192 1 78.15 ? O2 CIT 103 A 1 
HETATM 4 C C2 CIT . . . D 3 8.909 -12.066 35.518 1 70.34 ? C2 CIT 103 A 1 
HETATM 5 C C3 CIT . . . D 3 9.857 -13.265 35.421 1 65.85 ? C3 CIT 103 A 1 
HETATM 6 O O7 CIT . . . D 3 9.282 -14.357 36.182 1 63.71 ? O7 CIT 103 A 1 
HETATM 7 C C4 CIT . . . D 3 10.034 -13.717 33.976 1 59.94 ? C4 CIT 103 A 1 
HETATM 8 C C5 CIT . . . D 3 8.811 -14.457 33.49 1 47.13 ? C5 CIT 103 A 1 
HETATM 9 O O3 CIT . . . D 3 7.75 -13.845 33.258 1 47.56 ? O3 CIT 103 A 1 
HETATM 10 O O4 CIT . . . D 3 8.845 -15.692 33.301 1 50.34 ? O4 CIT 103 A 1 
HETATM 11 C C6 CIT . . . D 3 11.238 -12.963 35.99 1 61.12 ? C6 CIT 103 A 1 
HETATM 12 O O5 CIT . . . D 3 12.042 -12.193 35.416 1 73.22 ? O5 CIT 103 A 1 
HETATM 13 O O6 CIT . . . D 3 11.587 -13.496 37.062 1 74.56 ? O6 CIT 103 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           13 
#