data_5U59 # _model_server_result.job_id nzUrRJo0WqgJPGeDtUYimQ _model_server_result.datetime_utc '2024-10-19 22:35:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u59 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":104}' # _entry.id 5U59 # _exptl.entry_id 5U59 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.98 _cell.angle_gamma 90 _cell.entry_id 5U59 _cell.length_a 36.326 _cell.length_b 52.17 _cell.length_c 25.581 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U59 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -12.359879 0 49.646587 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N GLU 2 A GLU 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C LYS 7 A LYS 6 1_555 A N 7WJ 8 A 7WJ 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C 7WJ 8 A 7WJ 7 1_555 A N GLU 9 A GLU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C LEU 27 A LEU 26 1_555 A N 7WJ 28 A 7WJ 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C 7WJ 28 A 7WJ 27 1_555 A N LYS 29 A LYS 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A NT2 7WJ 8 A 7WJ 7 1_555 B CU CU . A CU 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc2 A NU1 7WJ 8 A 7WJ 7 1_555 B CU CU . A CU 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc3 A NU3 7WJ 8 A 7WJ 7 1_555 B CU CU . A CU 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc4 A NT2 7WJ 28 A 7WJ 27 1_555 C CU CU . A CU 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc5 A NU1 7WJ 28 A 7WJ 27 1_555 C CU CU . A CU 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc6 A NU3 7WJ 28 A 7WJ 27 1_555 C CU CU . A CU 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc7 B CU CU . A CU 101 1_555 D O3 CIT . A CIT 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? metalc ? metalc8 C CU CU . A CU 102 1_555 E O2 CIT . A CIT 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 84 n n C1 O2 CIT sing 85 n n C1 C2 CIT sing 86 n n O2 HO2 CIT sing 87 n n C2 C3 CIT sing 88 n n C2 H21 CIT sing 89 n n C2 H22 CIT sing 90 n n C3 O7 CIT sing 91 n n C3 C4 CIT sing 92 n n C3 C6 CIT sing 93 n n O7 HO7 CIT sing 94 n n C4 C5 CIT sing 95 n n C4 H41 CIT sing 96 n n C4 H42 CIT sing 97 n n C5 O3 CIT doub 98 n n C5 O4 CIT sing 99 n n O4 HO4 CIT sing 100 n n C6 O5 CIT doub 101 n n C6 O6 CIT sing 102 n n O6 HO6 CIT sing 103 n n # _atom_sites.entry_id 5U59 _atom_sites.fract_transf_matrix[1][1] 0.027528 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006852 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019168 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.040284 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 101 207 CU CU . C 2 CU A 1 102 227 CU CU . D 3 CIT A 1 103 1 CIT CIT . E 3 CIT A 1 104 2 CIT CIT . F 4 HOH A 1 201 16 HOH HOH . F 4 HOH A 2 202 29 HOH HOH . F 4 HOH A 3 203 21 HOH HOH . F 4 HOH A 4 204 11 HOH HOH . F 4 HOH A 5 205 22 HOH HOH . F 4 HOH A 6 206 6 HOH HOH . F 4 HOH A 7 207 13 HOH HOH . F 4 HOH A 8 208 10 HOH HOH . F 4 HOH A 9 209 1 HOH HOH . F 4 HOH A 10 210 12 HOH HOH . F 4 HOH A 11 211 3 HOH HOH . F 4 HOH A 12 212 5 HOH HOH . F 4 HOH A 13 213 20 HOH HOH . F 4 HOH A 14 214 2 HOH HOH . F 4 HOH A 15 215 24 HOH HOH . F 4 HOH A 16 216 4 HOH HOH . F 4 HOH A 17 217 18 HOH HOH . F 4 HOH A 18 218 23 HOH HOH . F 4 HOH A 19 219 19 HOH HOH . F 4 HOH A 20 220 26 HOH HOH . F 4 HOH A 21 221 25 HOH HOH . F 4 HOH A 22 222 7 HOH HOH . F 4 HOH A 23 223 14 HOH HOH . F 4 HOH A 24 224 28 HOH HOH . F 4 HOH A 25 225 27 HOH HOH . F 4 HOH A 26 226 8 HOH HOH . F 4 HOH A 27 227 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . E 3 -16.416 5.382 34.353 1 68.35 ? C1 CIT 104 A 1 HETATM 2 O O1 CIT . . . E 3 -16.524 6.339 33.561 1 58.92 ? O1 CIT 104 A 1 HETATM 3 O O2 CIT . . . E 3 -15.42 4.636 34.253 1 80.41 ? O2 CIT 104 A 1 HETATM 4 C C2 CIT . . . E 3 -17.463 5.128 35.411 1 79.04 ? C2 CIT 104 A 1 HETATM 5 C C3 CIT . . . E 3 -18.185 3.823 35.101 1 87.03 ? C3 CIT 104 A 1 HETATM 6 O O7 CIT . . . E 3 -17.451 3.1 34.081 1 87.78 ? O7 CIT 104 A 1 HETATM 7 C C4 CIT . . . E 3 -18.278 2.949 36.345 1 97.11 ? C4 CIT 104 A 1 HETATM 8 C C5 CIT . . . E 3 -17.061 2.054 36.407 1 94.34 ? C5 CIT 104 A 1 HETATM 9 O O3 CIT . . . E 3 -17.171 0.828 36.189 1 89.32 ? O3 CIT 104 A 1 HETATM 10 O O4 CIT . . . E 3 -15.93 2.522 36.671 1 87.53 ? O4 CIT 104 A 1 HETATM 11 C C6 CIT . . . E 3 -19.578 4.145 34.584 1 94.18 ? C6 CIT 104 A 1 HETATM 12 O O5 CIT . . . E 3 -19.797 5.218 33.983 1 87.34 ? O5 CIT 104 A 1 HETATM 13 O O6 CIT . . . E 3 -20.518 3.338 34.752 1 95.43 ? O6 CIT 104 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 13 #