data_5U5K # _model_server_result.job_id DUfD78IxeizRwJocohP3EA _model_server_result.datetime_utc '2024-10-20 03:52:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u5k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 5U5K # _exptl.entry_id 5U5K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 205.296 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R)-3-[(3-methoxyphenyl)methyl]piperidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.56 _cell.angle_gamma 90 _cell.entry_id 5U5K _cell.length_a 50.661 _cell.length_b 60.833 _cell.length_c 66.055 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U5K _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H19 N O' _chem_comp.formula_weight 205.296 _chem_comp.id 7VY _chem_comp.mon_nstd_flag . _chem_comp.name (3R)-3-[(3-methoxyphenyl)methyl]piperidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C11 7VY sing 1 n n C10 C9 7VY sing 2 n n C11 N12 7VY sing 3 n n C9 C8 7VY sing 4 n n C15 O14 7VY sing 5 n n O14 C6 7VY sing 6 n n N12 C13 7VY sing 7 n n C8 C13 7VY sing 8 n n C8 C7 7VY sing 9 n n C6 C5 7VY doub 10 n y C6 C1 7VY sing 11 n y C5 C4 7VY sing 12 n y C7 C4 7VY sing 13 n n C1 C2 7VY doub 14 n y C4 C3 7VY doub 15 n y C2 C3 7VY sing 16 n y C1 H1 7VY sing 17 n n C2 H2 7VY sing 18 n n C3 H3 7VY sing 19 n n C11 H4 7VY sing 20 n n C11 H5 7VY sing 21 n n C13 H6 7VY sing 22 n n C13 H7 7VY sing 23 n n C15 H8 7VY sing 24 n n C15 H9 7VY sing 25 n n C15 H10 7VY sing 26 n n C5 H11 7VY sing 27 n n C7 H12 7VY sing 28 n n C7 H13 7VY sing 29 n n C8 H14 7VY sing 30 n n C9 H15 7VY sing 31 n n C9 H16 7VY sing 32 n n C10 H17 7VY sing 33 n n C10 H18 7VY sing 34 n n N12 H19 7VY sing 35 n n # _atom_sites.entry_id 5U5K _atom_sites.fract_transf_matrix[1][1] 0.019739 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005127 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016438 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015641 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMT A 1 501 1 FMT FMT . C 3 7VY A 1 502 1 7VY LI1 . D 4 HOH A 1 601 148 HOH HOH . D 4 HOH A 2 602 129 HOH HOH . D 4 HOH A 3 603 132 HOH HOH . D 4 HOH A 4 604 85 HOH HOH . D 4 HOH A 5 605 121 HOH HOH . D 4 HOH A 6 606 152 HOH HOH . D 4 HOH A 7 607 136 HOH HOH . D 4 HOH A 8 608 120 HOH HOH . D 4 HOH A 9 609 141 HOH HOH . D 4 HOH A 10 610 28 HOH HOH . D 4 HOH A 11 611 34 HOH HOH . D 4 HOH A 12 612 88 HOH HOH . D 4 HOH A 13 613 151 HOH HOH . D 4 HOH A 14 614 143 HOH HOH . D 4 HOH A 15 615 51 HOH HOH . D 4 HOH A 16 616 140 HOH HOH . D 4 HOH A 17 617 1 HOH HOH . D 4 HOH A 18 618 9 HOH HOH . D 4 HOH A 19 619 107 HOH HOH . D 4 HOH A 20 620 73 HOH HOH . D 4 HOH A 21 621 2 HOH HOH . D 4 HOH A 22 622 12 HOH HOH . D 4 HOH A 23 623 126 HOH HOH . D 4 HOH A 24 624 20 HOH HOH . D 4 HOH A 25 625 83 HOH HOH . D 4 HOH A 26 626 96 HOH HOH . D 4 HOH A 27 627 5 HOH HOH . D 4 HOH A 28 628 45 HOH HOH . D 4 HOH A 29 629 102 HOH HOH . D 4 HOH A 30 630 155 HOH HOH . D 4 HOH A 31 631 3 HOH HOH . D 4 HOH A 32 632 13 HOH HOH . D 4 HOH A 33 633 91 HOH HOH . D 4 HOH A 34 634 50 HOH HOH . D 4 HOH A 35 635 139 HOH HOH . D 4 HOH A 36 636 153 HOH HOH . D 4 HOH A 37 637 105 HOH HOH . D 4 HOH A 38 638 124 HOH HOH . D 4 HOH A 39 639 36 HOH HOH . D 4 HOH A 40 640 149 HOH HOH . D 4 HOH A 41 641 74 HOH HOH . D 4 HOH A 42 642 86 HOH HOH . D 4 HOH A 43 643 6 HOH HOH . D 4 HOH A 44 644 26 HOH HOH . D 4 HOH A 45 645 11 HOH HOH . D 4 HOH A 46 646 4 HOH HOH . D 4 HOH A 47 647 82 HOH HOH . D 4 HOH A 48 648 44 HOH HOH . D 4 HOH A 49 649 137 HOH HOH . D 4 HOH A 50 650 63 HOH HOH . D 4 HOH A 51 651 97 HOH HOH . D 4 HOH A 52 652 24 HOH HOH . D 4 HOH A 53 653 17 HOH HOH . D 4 HOH A 54 654 59 HOH HOH . D 4 HOH A 55 655 146 HOH HOH . D 4 HOH A 56 656 16 HOH HOH . D 4 HOH A 57 657 101 HOH HOH . D 4 HOH A 58 658 67 HOH HOH . D 4 HOH A 59 659 53 HOH HOH . D 4 HOH A 60 660 31 HOH HOH . D 4 HOH A 61 661 93 HOH HOH . D 4 HOH A 62 662 42 HOH HOH . D 4 HOH A 63 663 54 HOH HOH . D 4 HOH A 64 664 7 HOH HOH . D 4 HOH A 65 665 55 HOH HOH . D 4 HOH A 66 666 23 HOH HOH . D 4 HOH A 67 667 144 HOH HOH . D 4 HOH A 68 668 48 HOH HOH . D 4 HOH A 69 669 40 HOH HOH . D 4 HOH A 70 670 135 HOH HOH . D 4 HOH A 71 671 15 HOH HOH . D 4 HOH A 72 672 38 HOH HOH . D 4 HOH A 73 673 49 HOH HOH . D 4 HOH A 74 674 103 HOH HOH . D 4 HOH A 75 675 10 HOH HOH . D 4 HOH A 76 676 64 HOH HOH . D 4 HOH A 77 677 30 HOH HOH . D 4 HOH A 78 678 18 HOH HOH . D 4 HOH A 79 679 65 HOH HOH . D 4 HOH A 80 680 92 HOH HOH . D 4 HOH A 81 681 122 HOH HOH . D 4 HOH A 82 682 25 HOH HOH . D 4 HOH A 83 683 112 HOH HOH . D 4 HOH A 84 684 111 HOH HOH . D 4 HOH A 85 685 8 HOH HOH . D 4 HOH A 86 686 94 HOH HOH . D 4 HOH A 87 687 37 HOH HOH . D 4 HOH A 88 688 52 HOH HOH . D 4 HOH A 89 689 116 HOH HOH . D 4 HOH A 90 690 14 HOH HOH . D 4 HOH A 91 691 46 HOH HOH . D 4 HOH A 92 692 56 HOH HOH . D 4 HOH A 93 693 22 HOH HOH . D 4 HOH A 94 694 21 HOH HOH . D 4 HOH A 95 695 70 HOH HOH . D 4 HOH A 96 696 33 HOH HOH . D 4 HOH A 97 697 72 HOH HOH . D 4 HOH A 98 698 62 HOH HOH . D 4 HOH A 99 699 78 HOH HOH . D 4 HOH A 100 700 43 HOH HOH . D 4 HOH A 101 701 69 HOH HOH . D 4 HOH A 102 702 154 HOH HOH . D 4 HOH A 103 703 147 HOH HOH . D 4 HOH A 104 704 29 HOH HOH . D 4 HOH A 105 705 106 HOH HOH . D 4 HOH A 106 706 79 HOH HOH . D 4 HOH A 107 707 109 HOH HOH . D 4 HOH A 108 708 19 HOH HOH . D 4 HOH A 109 709 32 HOH HOH . D 4 HOH A 110 710 41 HOH HOH . D 4 HOH A 111 711 39 HOH HOH . D 4 HOH A 112 712 119 HOH HOH . D 4 HOH A 113 713 114 HOH HOH . D 4 HOH A 114 714 98 HOH HOH . D 4 HOH A 115 715 89 HOH HOH . D 4 HOH A 116 716 131 HOH HOH . D 4 HOH A 117 717 76 HOH HOH . D 4 HOH A 118 718 104 HOH HOH . D 4 HOH A 119 719 35 HOH HOH . D 4 HOH A 120 720 133 HOH HOH . D 4 HOH A 121 721 87 HOH HOH . D 4 HOH A 122 722 81 HOH HOH . D 4 HOH A 123 723 77 HOH HOH . D 4 HOH A 124 724 84 HOH HOH . D 4 HOH A 125 725 58 HOH HOH . D 4 HOH A 126 726 80 HOH HOH . D 4 HOH A 127 727 27 HOH HOH . D 4 HOH A 128 728 71 HOH HOH . D 4 HOH A 129 729 66 HOH HOH . D 4 HOH A 130 730 90 HOH HOH . D 4 HOH A 131 731 117 HOH HOH . D 4 HOH A 132 732 113 HOH HOH . D 4 HOH A 133 733 60 HOH HOH . D 4 HOH A 134 734 118 HOH HOH . D 4 HOH A 135 735 95 HOH HOH . D 4 HOH A 136 736 134 HOH HOH . D 4 HOH A 137 737 145 HOH HOH . D 4 HOH A 138 738 127 HOH HOH . D 4 HOH A 139 739 110 HOH HOH . D 4 HOH A 140 740 130 HOH HOH . D 4 HOH A 141 741 138 HOH HOH . D 4 HOH A 142 742 75 HOH HOH . D 4 HOH A 143 743 47 HOH HOH . D 4 HOH A 144 744 100 HOH HOH . D 4 HOH A 145 745 150 HOH HOH . D 4 HOH A 146 746 108 HOH HOH . D 4 HOH A 147 747 57 HOH HOH . D 4 HOH A 148 748 128 HOH HOH . D 4 HOH A 149 749 142 HOH HOH . D 4 HOH A 150 750 123 HOH HOH . D 4 HOH A 151 751 125 HOH HOH . D 4 HOH A 152 752 68 HOH HOH . D 4 HOH A 153 753 61 HOH HOH . D 4 HOH A 154 754 99 HOH HOH . D 4 HOH A 155 755 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 7VY . . . C 3 22.174 -4.929 10.578 1 44.03 ? C1 7VY 502 A 1 HETATM 2 C C2 7VY . . . C 3 22.107 -3.786 11.39 1 42.62 ? C2 7VY 502 A 1 HETATM 3 C C3 7VY . . . C 3 20.93 -3.022 11.403 1 44.04 ? C3 7VY 502 A 1 HETATM 4 C C11 7VY . . . C 3 19.339 0.941 7.642 1 60.15 ? C11 7VY 502 A 1 HETATM 5 C C13 7VY . . . C 3 19.225 0.025 10.003 1 59.34 ? C13 7VY 502 A 1 HETATM 6 C C15 7VY . . . C 3 20.01 -6.998 8.215 1 49.1 ? C15 7VY 502 A 1 HETATM 7 C C4 7VY . . . C 3 19.819 -3.394 10.609 1 46.9 ? C4 7VY 502 A 1 HETATM 8 C C5 7VY . . . C 3 19.923 -4.52 9.775 1 44.27 ? C5 7VY 502 A 1 HETATM 9 C C6 7VY . . . C 3 21.081 -5.312 9.758 1 45.05 ? C6 7VY 502 A 1 HETATM 10 C C7 7VY . . . C 3 18.586 -2.477 10.491 1 50.12 ? C7 7VY 502 A 1 HETATM 11 C C8 7VY . . . C 3 19.031 -1.412 9.435 1 54.5 ? C8 7VY 502 A 1 HETATM 12 C C9 7VY . . . C 3 18.18 -1.315 8.14 1 55.63 ? C9 7VY 502 A 1 HETATM 13 C C10 7VY . . . C 3 18.92 -0.449 7.071 1 56.95 ? C10 7VY 502 A 1 HETATM 14 N N12 7VY . . . C 3 19.954 0.867 9.007 1 62 ? N12 7VY 502 A 1 HETATM 15 O O14 7VY . . . C 3 21.142 -6.445 8.906 1 47.11 ? O14 7VY 502 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #