data_5U5P
#
_model_server_result.job_id            jk17NHFA1jXz1piawF4b-g 
_model_server_result.datetime_utc      '2024-10-28 02:37:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5u5p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    5U5P 
#
_exptl.entry_id    5U5P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              154.251 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2,3-DIHYDROXY-1,4-DITHIOBUTANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5U5P 
_cell.length_a            77.215 
_cell.length_b            89.071 
_cell.length_c            99.139 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5U5P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C4 H10 O2 S2' 
_chem_comp.formula_weight    154.251 
_chem_comp.id                DTT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2,3-DIHYDROXY-1,4-DITHIOBUTANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1,4-DITHIOTHREITOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S1 C1 DTT sing 83 n n 
S1 HS1 DTT sing 84 n n 
C1 C2 DTT sing 85 n n 
C1 H11 DTT sing 86 n n 
C1 H12 DTT sing 87 n n 
C2 O2 DTT sing 88 n n 
C2 C3 DTT sing 89 n n 
C2 H2 DTT sing 90 n n 
O2 HO2 DTT sing 91 n n 
C3 O3 DTT sing 92 n n 
C3 C4 DTT sing 93 n n 
C3 H3 DTT sing 94 n n 
O3 HO3 DTT sing 95 n n 
C4 S4 DTT sing 96 n n 
C4 H41 DTT sing 97 n n 
C4 H42 DTT sing 98 n n 
S4 HS2 DTT sing 99 n n 
#
_atom_sites.entry_id                     5U5P 
_atom_sites.fract_transf_matrix[1][1]    0.012951 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011227 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010087 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 DTT A 1 601 1 DTT DTT . 
E 4 HOH C 1 501 165 HOH HOH . 
E 4 HOH C 2 502 7 HOH HOH . 
E 4 HOH C 3 503 79 HOH HOH . 
E 4 HOH C 4 504 191 HOH HOH . 
F 4 HOH B 1 501 212 HOH HOH . 
F 4 HOH B 2 502 76 HOH HOH . 
F 4 HOH B 3 503 108 HOH HOH . 
F 4 HOH B 4 504 213 HOH HOH . 
F 4 HOH B 5 505 81 HOH HOH . 
F 4 HOH B 6 506 156 HOH HOH . 
F 4 HOH B 7 507 87 HOH HOH . 
F 4 HOH B 8 508 202 HOH HOH . 
F 4 HOH B 9 509 157 HOH HOH . 
G 4 HOH A 1 701 208 HOH HOH . 
G 4 HOH A 2 702 68 HOH HOH . 
G 4 HOH A 3 703 49 HOH HOH . 
G 4 HOH A 4 704 12 HOH HOH . 
G 4 HOH A 5 705 94 HOH HOH . 
G 4 HOH A 6 706 205 HOH HOH . 
G 4 HOH A 7 707 129 HOH HOH . 
G 4 HOH A 8 708 59 HOH HOH . 
G 4 HOH A 9 709 16 HOH HOH . 
G 4 HOH A 10 710 18 HOH HOH . 
G 4 HOH A 11 711 171 HOH HOH . 
G 4 HOH A 12 712 112 HOH HOH . 
G 4 HOH A 13 713 52 HOH HOH . 
G 4 HOH A 14 714 106 HOH HOH . 
G 4 HOH A 15 715 109 HOH HOH . 
G 4 HOH A 16 716 44 HOH HOH . 
G 4 HOH A 17 717 27 HOH HOH . 
G 4 HOH A 18 718 17 HOH HOH . 
G 4 HOH A 19 719 40 HOH HOH . 
G 4 HOH A 20 720 173 HOH HOH . 
G 4 HOH A 21 721 2 HOH HOH . 
G 4 HOH A 22 722 134 HOH HOH . 
G 4 HOH A 23 723 30 HOH HOH . 
G 4 HOH A 24 724 118 HOH HOH . 
G 4 HOH A 25 725 131 HOH HOH . 
G 4 HOH A 26 726 6 HOH HOH . 
G 4 HOH A 27 727 5 HOH HOH . 
G 4 HOH A 28 728 11 HOH HOH . 
G 4 HOH A 29 729 90 HOH HOH . 
G 4 HOH A 30 730 214 HOH HOH . 
G 4 HOH A 31 731 88 HOH HOH . 
G 4 HOH A 32 732 159 HOH HOH . 
G 4 HOH A 33 733 19 HOH HOH . 
G 4 HOH A 34 734 9 HOH HOH . 
G 4 HOH A 35 735 1 HOH HOH . 
G 4 HOH A 36 736 181 HOH HOH . 
G 4 HOH A 37 737 31 HOH HOH . 
G 4 HOH A 38 738 15 HOH HOH . 
G 4 HOH A 39 739 47 HOH HOH . 
G 4 HOH A 40 740 218 HOH HOH . 
G 4 HOH A 41 741 26 HOH HOH . 
G 4 HOH A 42 742 170 HOH HOH . 
G 4 HOH A 43 743 86 HOH HOH . 
G 4 HOH A 44 744 32 HOH HOH . 
G 4 HOH A 45 745 160 HOH HOH . 
G 4 HOH A 46 746 198 HOH HOH . 
G 4 HOH A 47 747 100 HOH HOH . 
G 4 HOH A 48 748 148 HOH HOH . 
G 4 HOH A 49 749 107 HOH HOH . 
G 4 HOH A 50 750 172 HOH HOH . 
G 4 HOH A 51 751 22 HOH HOH . 
G 4 HOH A 52 752 48 HOH HOH . 
G 4 HOH A 53 753 142 HOH HOH . 
G 4 HOH A 54 754 73 HOH HOH . 
G 4 HOH A 55 755 62 HOH HOH . 
G 4 HOH A 56 756 3 HOH HOH . 
G 4 HOH A 57 757 43 HOH HOH . 
G 4 HOH A 58 758 144 HOH HOH . 
G 4 HOH A 59 759 65 HOH HOH . 
G 4 HOH A 60 760 149 HOH HOH . 
G 4 HOH A 61 761 54 HOH HOH . 
G 4 HOH A 62 762 176 HOH HOH . 
G 4 HOH A 63 763 46 HOH HOH . 
G 4 HOH A 64 764 14 HOH HOH . 
G 4 HOH A 65 765 164 HOH HOH . 
G 4 HOH A 66 766 66 HOH HOH . 
G 4 HOH A 67 767 4 HOH HOH . 
G 4 HOH A 68 768 29 HOH HOH . 
G 4 HOH A 69 769 114 HOH HOH . 
G 4 HOH A 70 770 122 HOH HOH . 
G 4 HOH A 71 771 184 HOH HOH . 
G 4 HOH A 72 772 83 HOH HOH . 
G 4 HOH A 73 773 25 HOH HOH . 
G 4 HOH A 74 774 23 HOH HOH . 
G 4 HOH A 75 775 133 HOH HOH . 
G 4 HOH A 76 776 55 HOH HOH . 
G 4 HOH A 77 777 92 HOH HOH . 
G 4 HOH A 78 778 130 HOH HOH . 
G 4 HOH A 79 779 42 HOH HOH . 
G 4 HOH A 80 780 166 HOH HOH . 
G 4 HOH A 81 781 8 HOH HOH . 
G 4 HOH A 82 782 224 HOH HOH . 
G 4 HOH A 83 783 128 HOH HOH . 
G 4 HOH A 84 784 13 HOH HOH . 
G 4 HOH A 85 785 20 HOH HOH . 
G 4 HOH A 86 786 28 HOH HOH . 
G 4 HOH A 87 787 193 HOH HOH . 
G 4 HOH A 88 788 64 HOH HOH . 
G 4 HOH A 89 789 137 HOH HOH . 
G 4 HOH A 90 790 41 HOH HOH . 
G 4 HOH A 91 791 178 HOH HOH . 
G 4 HOH A 92 792 105 HOH HOH . 
G 4 HOH A 93 793 158 HOH HOH . 
G 4 HOH A 94 794 53 HOH HOH . 
G 4 HOH A 95 795 24 HOH HOH . 
G 4 HOH A 96 796 58 HOH HOH . 
G 4 HOH A 97 797 10 HOH HOH . 
G 4 HOH A 98 798 21 HOH HOH . 
G 4 HOH A 99 799 56 HOH HOH . 
G 4 HOH A 100 800 91 HOH HOH . 
G 4 HOH A 101 801 179 HOH HOH . 
G 4 HOH A 102 802 85 HOH HOH . 
G 4 HOH A 103 803 194 HOH HOH . 
G 4 HOH A 104 804 216 HOH HOH . 
G 4 HOH A 105 805 182 HOH HOH . 
G 4 HOH A 106 806 50 HOH HOH . 
G 4 HOH A 107 807 220 HOH HOH . 
G 4 HOH A 108 808 98 HOH HOH . 
G 4 HOH A 109 809 34 HOH HOH . 
G 4 HOH A 110 810 60 HOH HOH . 
G 4 HOH A 111 811 113 HOH HOH . 
G 4 HOH A 112 812 169 HOH HOH . 
G 4 HOH A 113 813 82 HOH HOH . 
G 4 HOH A 114 814 185 HOH HOH . 
G 4 HOH A 115 815 51 HOH HOH . 
G 4 HOH A 116 816 186 HOH HOH . 
G 4 HOH A 117 817 207 HOH HOH . 
G 4 HOH A 118 818 127 HOH HOH . 
G 4 HOH A 119 819 45 HOH HOH . 
G 4 HOH A 120 820 75 HOH HOH . 
G 4 HOH A 121 821 210 HOH HOH . 
G 4 HOH A 122 822 95 HOH HOH . 
G 4 HOH A 123 823 102 HOH HOH . 
G 4 HOH A 124 824 111 HOH HOH . 
G 4 HOH A 125 825 78 HOH HOH . 
G 4 HOH A 126 826 124 HOH HOH . 
G 4 HOH A 127 827 33 HOH HOH . 
G 4 HOH A 128 828 141 HOH HOH . 
G 4 HOH A 129 829 177 HOH HOH . 
G 4 HOH A 130 830 199 HOH HOH . 
G 4 HOH A 131 831 63 HOH HOH . 
G 4 HOH A 132 832 135 HOH HOH . 
G 4 HOH A 133 833 67 HOH HOH . 
G 4 HOH A 134 834 201 HOH HOH . 
G 4 HOH A 135 835 195 HOH HOH . 
G 4 HOH A 136 836 84 HOH HOH . 
G 4 HOH A 137 837 39 HOH HOH . 
G 4 HOH A 138 838 69 HOH HOH . 
G 4 HOH A 139 839 37 HOH HOH . 
G 4 HOH A 140 840 167 HOH HOH . 
G 4 HOH A 141 841 189 HOH HOH . 
G 4 HOH A 142 842 38 HOH HOH . 
G 4 HOH A 143 843 151 HOH HOH . 
G 4 HOH A 144 844 215 HOH HOH . 
G 4 HOH A 145 845 57 HOH HOH . 
G 4 HOH A 146 846 217 HOH HOH . 
G 4 HOH A 147 847 117 HOH HOH . 
G 4 HOH A 148 848 138 HOH HOH . 
G 4 HOH A 149 849 36 HOH HOH . 
G 4 HOH A 150 850 35 HOH HOH . 
G 4 HOH A 151 851 77 HOH HOH . 
G 4 HOH A 152 852 116 HOH HOH . 
G 4 HOH A 153 853 72 HOH HOH . 
G 4 HOH A 154 854 175 HOH HOH . 
G 4 HOH A 155 855 126 HOH HOH . 
G 4 HOH A 156 856 120 HOH HOH . 
G 4 HOH A 157 857 123 HOH HOH . 
G 4 HOH A 158 858 101 HOH HOH . 
G 4 HOH A 159 859 197 HOH HOH . 
G 4 HOH A 160 860 103 HOH HOH . 
G 4 HOH A 161 861 74 HOH HOH . 
G 4 HOH A 162 862 89 HOH HOH . 
G 4 HOH A 163 863 206 HOH HOH . 
G 4 HOH A 164 864 70 HOH HOH . 
G 4 HOH A 165 865 163 HOH HOH . 
G 4 HOH A 166 866 223 HOH HOH . 
G 4 HOH A 167 867 150 HOH HOH . 
G 4 HOH A 168 868 139 HOH HOH . 
G 4 HOH A 169 869 97 HOH HOH . 
G 4 HOH A 170 870 204 HOH HOH . 
G 4 HOH A 171 871 136 HOH HOH . 
G 4 HOH A 172 872 119 HOH HOH . 
G 4 HOH A 173 873 140 HOH HOH . 
G 4 HOH A 174 874 211 HOH HOH . 
G 4 HOH A 175 875 143 HOH HOH . 
G 4 HOH A 176 876 196 HOH HOH . 
G 4 HOH A 177 877 110 HOH HOH . 
G 4 HOH A 178 878 132 HOH HOH . 
G 4 HOH A 179 879 162 HOH HOH . 
G 4 HOH A 180 880 80 HOH HOH . 
G 4 HOH A 181 881 104 HOH HOH . 
G 4 HOH A 182 882 93 HOH HOH . 
G 4 HOH A 183 883 154 HOH HOH . 
G 4 HOH A 184 884 188 HOH HOH . 
G 4 HOH A 185 885 115 HOH HOH . 
G 4 HOH A 186 886 99 HOH HOH . 
G 4 HOH A 187 887 219 HOH HOH . 
G 4 HOH A 188 888 187 HOH HOH . 
G 4 HOH A 189 889 153 HOH HOH . 
G 4 HOH A 190 890 155 HOH HOH . 
G 4 HOH A 191 891 174 HOH HOH . 
G 4 HOH A 192 892 145 HOH HOH . 
G 4 HOH A 193 893 203 HOH HOH . 
G 4 HOH A 194 894 200 HOH HOH . 
G 4 HOH A 195 895 221 HOH HOH . 
G 4 HOH A 196 896 180 HOH HOH . 
G 4 HOH A 197 897 225 HOH HOH . 
G 4 HOH A 198 898 96 HOH HOH . 
G 4 HOH A 199 899 190 HOH HOH . 
G 4 HOH A 200 900 147 HOH HOH . 
G 4 HOH A 201 901 168 HOH HOH . 
G 4 HOH A 202 902 121 HOH HOH . 
G 4 HOH A 203 903 161 HOH HOH . 
G 4 HOH A 204 904 209 HOH HOH . 
G 4 HOH A 205 905 192 HOH HOH . 
G 4 HOH A 206 906 146 HOH HOH . 
G 4 HOH A 207 907 125 HOH HOH . 
G 4 HOH A 208 908 61 HOH HOH . 
G 4 HOH A 209 909 222 HOH HOH . 
G 4 HOH A 210 910 152 HOH HOH . 
G 4 HOH A 211 911 183 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S1 DTT . . . D 3 33.127 77.796 57.366 1 75.88 ? S1 DTT 601 A 1 
HETATM 2 C C1 DTT . . . D 3 33.13 76.287 58.366 1 52.19 ? C1 DTT 601 A 1 
HETATM 3 C C2 DTT . . . D 3 32.062 76.318 59.459 1 59.22 ? C2 DTT 601 A 1 
HETATM 4 O O2 DTT . . . D 3 30.937 77.115 59.101 1 65.79 ? O2 DTT 601 A 1 
HETATM 5 C C3 DTT . . . D 3 32.654 76.793 60.777 1 49.64 ? C3 DTT 601 A 1 
HETATM 6 O O3 DTT . . . D 3 33.516 77.884 60.537 1 52.02 ? O3 DTT 601 A 1 
HETATM 7 C C4 DTT . . . D 3 31.529 77.129 61.747 1 51.6 ? C4 DTT 601 A 1 
HETATM 8 S S4 DTT . . . D 3 31.908 78.592 62.755 1 66.15 ? S4 DTT 601 A 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#