data_5U5X # _model_server_result.job_id gE5EOOknzPy5sToxyA-aZg _model_server_result.datetime_utc '2024-11-08 11:52:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5U5X # _exptl.entry_id 5U5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description THIOPHENE-3-CARBOXIMIDAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5U5X _cell.length_a 51.006 _cell.length_b 74.935 _cell.length_c 107.047 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 172 A HIS 175 1_555 B FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc2 B FE HEM . A HEM 301 1_555 D O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? # _chem_comp.formula 'C5 H6 N2 S' _chem_comp.formula_weight 126.18 _chem_comp.id TP5 _chem_comp.mon_nstd_flag . _chem_comp.name THIOPHENE-3-CARBOXIMIDAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 S1 TP5 sing 388 n y C4 C1 TP5 doub 389 n y C4 HC4 TP5 sing 390 n n S1 C5 TP5 sing 391 n y C5 C3 TP5 doub 392 n y C5 HC5 TP5 sing 393 n n C3 C1 TP5 sing 394 n y C3 HC3 TP5 sing 395 n n C1 C2 TP5 sing 396 n n C2 N2 TP5 sing 397 n n C2 N1 TP5 doub 398 e n N2 HN21 TP5 sing 399 n n N2 HN22 TP5 sing 400 n n N1 HN1 TP5 sing 401 n n # _atom_sites.entry_id 5U5X _atom_sites.fract_transf_matrix[1][1] 0.019606 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 301 1 HEM HEM . C 3 TP5 A 1 302 1 TP5 032 . D 4 HOH A 1 401 206 HOH HOH . D 4 HOH A 2 402 181 HOH HOH . D 4 HOH A 3 403 120 HOH HOH . D 4 HOH A 4 404 182 HOH HOH . D 4 HOH A 5 405 208 HOH HOH . D 4 HOH A 6 406 74 HOH HOH . D 4 HOH A 7 407 148 HOH HOH . D 4 HOH A 8 408 187 HOH HOH . D 4 HOH A 9 409 41 HOH HOH . D 4 HOH A 10 410 75 HOH HOH . D 4 HOH A 11 411 198 HOH HOH . D 4 HOH A 12 412 39 HOH HOH . D 4 HOH A 13 413 126 HOH HOH . D 4 HOH A 14 414 87 HOH HOH . D 4 HOH A 15 415 192 HOH HOH . D 4 HOH A 16 416 7 HOH HOH . D 4 HOH A 17 417 66 HOH HOH . D 4 HOH A 18 418 246 HOH HOH . D 4 HOH A 19 419 128 HOH HOH . D 4 HOH A 20 420 214 HOH HOH . D 4 HOH A 21 421 43 HOH HOH . D 4 HOH A 22 422 135 HOH HOH . D 4 HOH A 23 423 63 HOH HOH . D 4 HOH A 24 424 140 HOH HOH . D 4 HOH A 25 425 226 HOH HOH . D 4 HOH A 26 426 113 HOH HOH . D 4 HOH A 27 427 160 HOH HOH . D 4 HOH A 28 428 235 HOH HOH . D 4 HOH A 29 429 61 HOH HOH . D 4 HOH A 30 430 183 HOH HOH . D 4 HOH A 31 431 102 HOH HOH . D 4 HOH A 32 432 114 HOH HOH . D 4 HOH A 33 433 28 HOH HOH . D 4 HOH A 34 434 215 HOH HOH . D 4 HOH A 35 435 233 HOH HOH . D 4 HOH A 36 436 169 HOH HOH . D 4 HOH A 37 437 52 HOH HOH . D 4 HOH A 38 438 82 HOH HOH . D 4 HOH A 39 439 50 HOH HOH . D 4 HOH A 40 440 37 HOH HOH . D 4 HOH A 41 441 107 HOH HOH . D 4 HOH A 42 442 230 HOH HOH . D 4 HOH A 43 443 156 HOH HOH . D 4 HOH A 44 444 30 HOH HOH . D 4 HOH A 45 445 36 HOH HOH . D 4 HOH A 46 446 127 HOH HOH . D 4 HOH A 47 447 15 HOH HOH . D 4 HOH A 48 448 168 HOH HOH . D 4 HOH A 49 449 16 HOH HOH . D 4 HOH A 50 450 29 HOH HOH . D 4 HOH A 51 451 97 HOH HOH . D 4 HOH A 52 452 3 HOH HOH . D 4 HOH A 53 453 67 HOH HOH . D 4 HOH A 54 454 152 HOH HOH . D 4 HOH A 55 455 100 HOH HOH . D 4 HOH A 56 456 190 HOH HOH . D 4 HOH A 57 457 90 HOH HOH . D 4 HOH A 58 458 81 HOH HOH . D 4 HOH A 59 459 89 HOH HOH . D 4 HOH A 60 460 131 HOH HOH . D 4 HOH A 61 461 32 HOH HOH . D 4 HOH A 62 462 53 HOH HOH . D 4 HOH A 63 463 83 HOH HOH . D 4 HOH A 64 464 5 HOH HOH . D 4 HOH A 65 465 225 HOH HOH . D 4 HOH A 66 466 219 HOH HOH . D 4 HOH A 67 467 210 HOH HOH . D 4 HOH A 68 468 106 HOH HOH . D 4 HOH A 69 469 20 HOH HOH . D 4 HOH A 70 470 42 HOH HOH . D 4 HOH A 71 471 80 HOH HOH . D 4 HOH A 72 472 34 HOH HOH . D 4 HOH A 73 473 45 HOH HOH . D 4 HOH A 74 474 99 HOH HOH . D 4 HOH A 75 475 35 HOH HOH . D 4 HOH A 76 476 38 HOH HOH . D 4 HOH A 77 477 111 HOH HOH . D 4 HOH A 78 478 94 HOH HOH . D 4 HOH A 79 479 234 HOH HOH . D 4 HOH A 80 480 51 HOH HOH . D 4 HOH A 81 481 251 HOH HOH . D 4 HOH A 82 482 73 HOH HOH . D 4 HOH A 83 483 197 HOH HOH . D 4 HOH A 84 484 250 HOH HOH . D 4 HOH A 85 485 68 HOH HOH . D 4 HOH A 86 486 116 HOH HOH . D 4 HOH A 87 487 101 HOH HOH . D 4 HOH A 88 488 21 HOH HOH . D 4 HOH A 89 489 185 HOH HOH . D 4 HOH A 90 490 195 HOH HOH . D 4 HOH A 91 491 171 HOH HOH . D 4 HOH A 92 492 17 HOH HOH . D 4 HOH A 93 493 49 HOH HOH . D 4 HOH A 94 494 205 HOH HOH . D 4 HOH A 95 495 108 HOH HOH . D 4 HOH A 96 496 204 HOH HOH . D 4 HOH A 97 497 110 HOH HOH . D 4 HOH A 98 498 236 HOH HOH . D 4 HOH A 99 499 22 HOH HOH . D 4 HOH A 100 500 13 HOH HOH . D 4 HOH A 101 501 212 HOH HOH . D 4 HOH A 102 502 95 HOH HOH . D 4 HOH A 103 503 136 HOH HOH . D 4 HOH A 104 504 170 HOH HOH . D 4 HOH A 105 505 25 HOH HOH . D 4 HOH A 106 506 174 HOH HOH . D 4 HOH A 107 507 31 HOH HOH . D 4 HOH A 108 508 14 HOH HOH . D 4 HOH A 109 509 153 HOH HOH . D 4 HOH A 110 510 11 HOH HOH . D 4 HOH A 111 511 86 HOH HOH . D 4 HOH A 112 512 155 HOH HOH . D 4 HOH A 113 513 123 HOH HOH . D 4 HOH A 114 514 56 HOH HOH . D 4 HOH A 115 515 71 HOH HOH . D 4 HOH A 116 516 134 HOH HOH . D 4 HOH A 117 517 139 HOH HOH . D 4 HOH A 118 518 40 HOH HOH . D 4 HOH A 119 519 12 HOH HOH . D 4 HOH A 120 520 151 HOH HOH . D 4 HOH A 121 521 138 HOH HOH . D 4 HOH A 122 522 8 HOH HOH . D 4 HOH A 123 523 26 HOH HOH . D 4 HOH A 124 524 247 HOH HOH . D 4 HOH A 125 525 23 HOH HOH . D 4 HOH A 126 526 150 HOH HOH . D 4 HOH A 127 527 232 HOH HOH . D 4 HOH A 128 528 159 HOH HOH . D 4 HOH A 129 529 1 HOH HOH . D 4 HOH A 130 530 24 HOH HOH . D 4 HOH A 131 531 121 HOH HOH . D 4 HOH A 132 532 96 HOH HOH . D 4 HOH A 133 533 202 HOH HOH . D 4 HOH A 134 534 252 HOH HOH . D 4 HOH A 135 535 143 HOH HOH . D 4 HOH A 136 536 47 HOH HOH . D 4 HOH A 137 537 65 HOH HOH . D 4 HOH A 138 538 184 HOH HOH . D 4 HOH A 139 539 60 HOH HOH . D 4 HOH A 140 540 78 HOH HOH . D 4 HOH A 141 541 112 HOH HOH . D 4 HOH A 142 542 4 HOH HOH . D 4 HOH A 143 543 145 HOH HOH . D 4 HOH A 144 544 263 HOH HOH . D 4 HOH A 145 545 256 HOH HOH . D 4 HOH A 146 546 241 HOH HOH . D 4 HOH A 147 547 72 HOH HOH . D 4 HOH A 148 548 79 HOH HOH . D 4 HOH A 149 549 48 HOH HOH . D 4 HOH A 150 550 44 HOH HOH . D 4 HOH A 151 551 6 HOH HOH . D 4 HOH A 152 552 154 HOH HOH . D 4 HOH A 153 553 33 HOH HOH . D 4 HOH A 154 554 163 HOH HOH . D 4 HOH A 155 555 124 HOH HOH . D 4 HOH A 156 556 175 HOH HOH . D 4 HOH A 157 557 262 HOH HOH . D 4 HOH A 158 558 222 HOH HOH . D 4 HOH A 159 559 64 HOH HOH . D 4 HOH A 160 560 264 HOH HOH . D 4 HOH A 161 561 115 HOH HOH . D 4 HOH A 162 562 91 HOH HOH . D 4 HOH A 163 563 162 HOH HOH . D 4 HOH A 164 564 9 HOH HOH . D 4 HOH A 165 565 119 HOH HOH . D 4 HOH A 166 566 249 HOH HOH . D 4 HOH A 167 567 2 HOH HOH . D 4 HOH A 168 568 213 HOH HOH . D 4 HOH A 169 569 129 HOH HOH . D 4 HOH A 170 570 93 HOH HOH . D 4 HOH A 171 571 118 HOH HOH . D 4 HOH A 172 572 10 HOH HOH . D 4 HOH A 173 573 85 HOH HOH . D 4 HOH A 174 574 224 HOH HOH . D 4 HOH A 175 575 70 HOH HOH . D 4 HOH A 176 576 57 HOH HOH . D 4 HOH A 177 577 58 HOH HOH . D 4 HOH A 178 578 158 HOH HOH . D 4 HOH A 179 579 248 HOH HOH . D 4 HOH A 180 580 62 HOH HOH . D 4 HOH A 181 581 92 HOH HOH . D 4 HOH A 182 582 243 HOH HOH . D 4 HOH A 183 583 180 HOH HOH . D 4 HOH A 184 584 200 HOH HOH . D 4 HOH A 185 585 173 HOH HOH . D 4 HOH A 186 586 189 HOH HOH . D 4 HOH A 187 587 84 HOH HOH . D 4 HOH A 188 588 177 HOH HOH . D 4 HOH A 189 589 147 HOH HOH . D 4 HOH A 190 590 132 HOH HOH . D 4 HOH A 191 591 88 HOH HOH . D 4 HOH A 192 592 105 HOH HOH . D 4 HOH A 193 593 176 HOH HOH . D 4 HOH A 194 594 46 HOH HOH . D 4 HOH A 195 595 221 HOH HOH . D 4 HOH A 196 596 211 HOH HOH . D 4 HOH A 197 597 54 HOH HOH . D 4 HOH A 198 598 258 HOH HOH . D 4 HOH A 199 599 157 HOH HOH . D 4 HOH A 200 600 109 HOH HOH . D 4 HOH A 201 601 55 HOH HOH . D 4 HOH A 202 602 188 HOH HOH . D 4 HOH A 203 603 167 HOH HOH . D 4 HOH A 204 604 196 HOH HOH . D 4 HOH A 205 605 166 HOH HOH . D 4 HOH A 206 606 76 HOH HOH . D 4 HOH A 207 607 193 HOH HOH . D 4 HOH A 208 608 253 HOH HOH . D 4 HOH A 209 609 125 HOH HOH . D 4 HOH A 210 610 18 HOH HOH . D 4 HOH A 211 611 191 HOH HOH . D 4 HOH A 212 612 141 HOH HOH . D 4 HOH A 213 613 223 HOH HOH . D 4 HOH A 214 614 179 HOH HOH . D 4 HOH A 215 615 133 HOH HOH . D 4 HOH A 216 616 77 HOH HOH . D 4 HOH A 217 617 244 HOH HOH . D 4 HOH A 218 618 137 HOH HOH . D 4 HOH A 219 619 217 HOH HOH . D 4 HOH A 220 620 194 HOH HOH . D 4 HOH A 221 621 220 HOH HOH . D 4 HOH A 222 622 178 HOH HOH . D 4 HOH A 223 623 149 HOH HOH . D 4 HOH A 224 624 231 HOH HOH . D 4 HOH A 225 625 227 HOH HOH . D 4 HOH A 226 626 254 HOH HOH . D 4 HOH A 227 627 103 HOH HOH . D 4 HOH A 228 628 228 HOH HOH . D 4 HOH A 229 629 165 HOH HOH . D 4 HOH A 230 630 117 HOH HOH . D 4 HOH A 231 631 104 HOH HOH . D 4 HOH A 232 632 257 HOH HOH . D 4 HOH A 233 633 242 HOH HOH . D 4 HOH A 234 634 142 HOH HOH . D 4 HOH A 235 635 209 HOH HOH . D 4 HOH A 236 636 161 HOH HOH . D 4 HOH A 237 637 203 HOH HOH . D 4 HOH A 238 638 229 HOH HOH . D 4 HOH A 239 639 260 HOH HOH . D 4 HOH A 240 640 27 HOH HOH . D 4 HOH A 241 641 259 HOH HOH . D 4 HOH A 242 642 238 HOH HOH . D 4 HOH A 243 643 199 HOH HOH . D 4 HOH A 244 644 201 HOH HOH . D 4 HOH A 245 645 172 HOH HOH . D 4 HOH A 246 646 255 HOH HOH . D 4 HOH A 247 647 130 HOH HOH . D 4 HOH A 248 648 207 HOH HOH . D 4 HOH A 249 649 216 HOH HOH . D 4 HOH A 250 650 144 HOH HOH . D 4 HOH A 251 651 237 HOH HOH . D 4 HOH A 252 652 146 HOH HOH . D 4 HOH A 253 653 186 HOH HOH . D 4 HOH A 254 654 261 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 TP5 . . . C 3 -33.288 -71.797 -3.783 0.87 19.65 ? C4 TP5 302 A 1 HETATM 2 S S1 TP5 . . . C 3 -34.292 -72.638 -2.675 0.87 23.11 ? S1 TP5 302 A 1 HETATM 3 C C5 TP5 . . . C 3 -35.618 -72.992 -3.761 0.87 18.19 ? C5 TP5 302 A 1 HETATM 4 C C3 TP5 . . . C 3 -35.275 -72.399 -4.998 0.87 17.98 ? C3 TP5 302 A 1 HETATM 5 C C1 TP5 . . . C 3 -34.011 -71.761 -4.995 0.87 17.56 ? C1 TP5 302 A 1 HETATM 6 C C2 TP5 . . . C 3 -33.421 -71.069 -6.237 0.87 18.49 ? C2 TP5 302 A 1 HETATM 7 N N2 TP5 . . . C 3 -31.964 -71.052 -6.409 0.87 19.68 ? N2 TP5 302 A 1 HETATM 8 N N1 TP5 . . . C 3 -34.214 -70.508 -7.12 0.87 21.63 ? N1 TP5 302 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 8 #