data_5U6R
#
_model_server_result.job_id            Zp-JESA6Le_Gp3Kp0qDYOw 
_model_server_result.datetime_utc      '2024-10-19 16:22:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5u6r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":602}' 
#
_entry.id    5U6R 
#
_exptl.entry_id    5U6R 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? 28-meric 28 'representative helical assembly' 1 
? tetrameric 4 'helical asymmetric unit' 2 
? tetrameric 4 'helical asymmetric unit, std helical frame' 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L 1 (1-7) 
A,B,C,D,E,F,G,H,I,J,K,L 2 4 
A,B,C,D,E,F,G,H,I,J,K,L 3 H 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
H 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
1 'helical symmetry operation' ? ? -0.82599 0.563685 0 -0.563685 -0.82599 0 0 0 1 0 0 -244.773 
2 'helical symmetry operation' ? ? -0.124052 0.992276 0 -0.992276 -0.124052 0 0 0 1 0 0 -163.182 
3 'helical symmetry operation' ? ? 0.661796 0.749684 0 -0.749684 0.661796 0 0 0 1 0 0 -81.591 
4 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
5 'helical symmetry operation' ? ? 0.661796 -0.749684 0 0.749684 0.661796 0 0 0 1 0 0 81.591 
6 'helical symmetry operation' ? ? -0.124052 -0.992276 0 0.992276 -0.124052 0 0 0 1 0 0 163.182 
7 'helical symmetry operation' ? ? -0.82599 -0.563685 0 0.563685 -0.82599 0 0 0 1 0 0 244.773 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 261 A CYS 261 1_555 A SG CYS 268 A CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
disulf ? disulf2 B SG CYS 261 B CYS 261 1_555 B SG CYS 268 B CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf3 C SG CYS 261 C CYS 261 1_555 C SG CYS 268 C CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
disulf ? disulf4 D SG CYS 261 D CYS 261 1_555 D SG CYS 268 D CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     5U6R 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 CTP A 1 601 602 CTP CTP . 
F 3 ADP A 1 602 601 ADP ADP . 
G 2 CTP B 1 601 602 CTP CTP . 
H 3 ADP B 1 602 601 ADP ADP . 
I 2 CTP C 1 601 602 CTP CTP . 
J 3 ADP C 1 602 601 ADP ADP . 
K 2 CTP D 1 601 602 CTP CTP . 
L 3 ADP D 1 602 601 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . L 3 -10.974 12.435 -23.022 1 57.09 ? PB ADP 602 D 1 
HETATM 2 O O1B ADP . . . L 3 -12.462 12.613 -23.04 1 50.39 ? O1B ADP 602 D 1 
HETATM 3 O O2B ADP . . . L 3 -10.563 11.052 -22.609 1 42.23 ? O2B ADP 602 D 1 
HETATM 4 O O3B ADP . . . L 3 -10.191 13.563 -22.436 1 56.32 ? O3B ADP 602 D 1 
HETATM 5 P PA ADP . . . L 3 -10.003 13.737 -25.4 1 98.9 ? PA ADP 602 D 1 
HETATM 6 O O1A ADP . . . L 3 -10.964 14.887 -25.372 1 78.05 ? O1A ADP 602 D 1 
HETATM 7 O O2A ADP . . . L 3 -8.626 13.999 -24.895 1 100 ? O2A ADP 602 D 1 
HETATM 8 O O3A ADP . . . L 3 -10.596 12.445 -24.607 1 89.06 ? O3A ADP 602 D 1 
HETATM 9 O O5' ADP . . . L 3 -9.899 13.156 -26.765 1 89.63 ? O5' ADP 602 D 1 
HETATM 10 C C5' ADP . . . L 3 -10.772 12.146 -27.232 1 87.09 ? C5' ADP 602 D 1 
HETATM 11 C C4' ADP . . . L 3 -10.089 11.387 -28.356 1 88.9 ? C4' ADP 602 D 1 
HETATM 12 O O4' ADP . . . L 3 -10.359 9.975 -28.219 1 86.33 ? O4' ADP 602 D 1 
HETATM 13 C C3' ADP . . . L 3 -10.535 11.766 -29.77 1 91.37 ? C3' ADP 602 D 1 
HETATM 14 O O3' ADP . . . L 3 -9.414 12.067 -30.617 1 92.46 ? O3' ADP 602 D 1 
HETATM 15 C C2' ADP . . . L 3 -11.308 10.546 -30.264 1 88.24 ? C2' ADP 602 D 1 
HETATM 16 O O2' ADP . . . L 3 -11.151 10.371 -31.656 1 88.33 ? O2' ADP 602 D 1 
HETATM 17 C C1' ADP . . . L 3 -10.66 9.414 -29.473 1 85.52 ? C1' ADP 602 D 1 
HETATM 18 N N9 ADP . . . L 3 -11.503 8.246 -29.209 1 48.7 ? N9 ADP 602 D 1 
HETATM 19 C C8 ADP . . . L 3 -12.2 7.73 -28.161 1 69.02 ? C8 ADP 602 D 1 
HETATM 20 N N7 ADP . . . L 3 -13.169 6.93 -28.525 1 99.46 ? N7 ADP 602 D 1 
HETATM 21 C C5 ADP . . . L 3 -12.835 6.606 -29.828 1 38.57 ? C5 ADP 602 D 1 
HETATM 22 C C6 ADP . . . L 3 -13.083 5.463 -30.61 1 72.79 ? C6 ADP 602 D 1 
HETATM 23 N N6 ADP . . . L 3 -13.4 4.278 -30.088 1 63.15 ? N6 ADP 602 D 1 
HETATM 24 N N1 ADP . . . L 3 -12.629 5.485 -31.872 1 59.33 ? N1 ADP 602 D 1 
HETATM 25 C C2 ADP . . . L 3 -11.583 6.27 -32.126 1 42.45 ? C2 ADP 602 D 1 
HETATM 26 N N3 ADP . . . L 3 -11.029 7.187 -31.338 1 58.47 ? N3 ADP 602 D 1 
HETATM 27 C C4 ADP . . . L 3 -11.798 7.416 -30.266 1 58.88 ? C4 ADP 602 D 1 
#
_model_server_stats.io_time_ms              78 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    55 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           27 
#