data_5U6V # _model_server_result.job_id dTZzaCx97Q1d4aiOcC7-Vg _model_server_result.datetime_utc '2024-11-22 00:19:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u6v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5U6V # _exptl.entry_id 5U6V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.879 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[7-(4-chlorophenyl)-1-methyl-6,7-dihydro-5H-[1,2,3]triazolo[1,5-d][1,4]benzodiazepin-9-yl]pyridin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5U6V _cell.length_a 52.617 _cell.length_b 71.743 _cell.length_c 31.935 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U6V _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H19 Cl N6' _chem_comp.formula_weight 402.879 _chem_comp.id 7WY _chem_comp.mon_nstd_flag . _chem_comp.name 5-[7-(4-chlorophenyl)-1-methyl-6,7-dihydro-5H-[1,2,3]triazolo[1,5-d][1,4]benzodiazepin-9-yl]pyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C26 7WY sing 1 n n C26 C27 7WY doub 2 n y C26 C25 7WY sing 3 n y C27 C28 7WY sing 4 n y C25 C24 7WY doub 5 n y C28 C23 7WY doub 6 n y C24 C23 7WY sing 7 n y C23 N09 7WY sing 8 n n C18 C17 7WY doub 9 n y C18 C19 7WY sing 10 n y N09 C08 7WY sing 11 n n N09 C10 7WY sing 12 n n N22 C19 7WY sing 13 n n C08 C07 7WY sing 14 n n C17 C16 7WY sing 15 n y C19 N20 7WY doub 16 n y C15 C10 7WY doub 17 n y C15 C14 7WY sing 18 n y C10 C11 7WY sing 19 n y C16 C14 7WY sing 20 n n C16 C21 7WY doub 21 n y N20 C21 7WY sing 22 n y C14 C13 7WY doub 23 n y C07 N04 7WY sing 24 n n C11 C03 7WY sing 25 n n C11 C12 7WY doub 26 n y N04 C03 7WY sing 27 n y N04 N05 7WY sing 28 n y C03 C02 7WY doub 29 n y C13 C12 7WY sing 30 n y N05 N06 7WY doub 31 n y C02 N06 7WY sing 32 n y C02 C01 7WY sing 33 n n C13 H1 7WY sing 34 n n C15 H2 7WY sing 35 n n C17 H3 7WY sing 36 n n C21 H4 7WY sing 37 n n C24 H5 7WY sing 38 n n C28 H6 7WY sing 39 n n C01 H7 7WY sing 40 n n C01 H8 7WY sing 41 n n C01 H9 7WY sing 42 n n C07 H10 7WY sing 43 n n C07 H11 7WY sing 44 n n C08 H12 7WY sing 45 n n C08 H13 7WY sing 46 n n C12 H14 7WY sing 47 n n C18 H15 7WY sing 48 n n N22 H16 7WY sing 49 n n N22 H17 7WY sing 50 n n C25 H18 7WY sing 51 n n C27 H19 7WY sing 52 n n # _atom_sites.entry_id 5U6V _atom_sites.fract_transf_matrix[1][1] 0.019005 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031314 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7WY A 1 501 1 7WY LIG . C 3 EDO A 1 502 1 EDO EDO . D 3 EDO A 1 503 2 EDO EDO . E 3 EDO A 1 504 3 EDO EDO . F 3 EDO A 1 505 4 EDO EDO . G 3 EDO A 1 506 5 EDO EDO . H 4 HOH A 1 601 133 HOH HOH . H 4 HOH A 2 602 118 HOH HOH . H 4 HOH A 3 603 25 HOH HOH . H 4 HOH A 4 604 3 HOH HOH . H 4 HOH A 5 605 13 HOH HOH . H 4 HOH A 6 606 35 HOH HOH . H 4 HOH A 7 607 100 HOH HOH . H 4 HOH A 8 608 17 HOH HOH . H 4 HOH A 9 609 128 HOH HOH . H 4 HOH A 10 610 7 HOH HOH . H 4 HOH A 11 611 8 HOH HOH . H 4 HOH A 12 612 38 HOH HOH . H 4 HOH A 13 613 18 HOH HOH . H 4 HOH A 14 614 16 HOH HOH . H 4 HOH A 15 615 140 HOH HOH . H 4 HOH A 16 616 56 HOH HOH . H 4 HOH A 17 617 15 HOH HOH . H 4 HOH A 18 618 39 HOH HOH . H 4 HOH A 19 619 76 HOH HOH . H 4 HOH A 20 620 61 HOH HOH . H 4 HOH A 21 621 116 HOH HOH . H 4 HOH A 22 622 131 HOH HOH . H 4 HOH A 23 623 42 HOH HOH . H 4 HOH A 24 624 72 HOH HOH . H 4 HOH A 25 625 12 HOH HOH . H 4 HOH A 26 626 111 HOH HOH . H 4 HOH A 27 627 36 HOH HOH . H 4 HOH A 28 628 45 HOH HOH . H 4 HOH A 29 629 10 HOH HOH . H 4 HOH A 30 630 47 HOH HOH . H 4 HOH A 31 631 27 HOH HOH . H 4 HOH A 32 632 144 HOH HOH . H 4 HOH A 33 633 124 HOH HOH . H 4 HOH A 34 634 20 HOH HOH . H 4 HOH A 35 635 37 HOH HOH . H 4 HOH A 36 636 65 HOH HOH . H 4 HOH A 37 637 2 HOH HOH . H 4 HOH A 38 638 121 HOH HOH . H 4 HOH A 39 639 117 HOH HOH . H 4 HOH A 40 640 24 HOH HOH . H 4 HOH A 41 641 51 HOH HOH . H 4 HOH A 42 642 6 HOH HOH . H 4 HOH A 43 643 99 HOH HOH . H 4 HOH A 44 644 83 HOH HOH . H 4 HOH A 45 645 127 HOH HOH . H 4 HOH A 46 646 23 HOH HOH . H 4 HOH A 47 647 119 HOH HOH . H 4 HOH A 48 648 43 HOH HOH . H 4 HOH A 49 649 71 HOH HOH . H 4 HOH A 50 650 77 HOH HOH . H 4 HOH A 51 651 95 HOH HOH . H 4 HOH A 52 652 97 HOH HOH . H 4 HOH A 53 653 62 HOH HOH . H 4 HOH A 54 654 9 HOH HOH . H 4 HOH A 55 655 1 HOH HOH . H 4 HOH A 56 656 22 HOH HOH . H 4 HOH A 57 657 57 HOH HOH . H 4 HOH A 58 658 14 HOH HOH . H 4 HOH A 59 659 91 HOH HOH . H 4 HOH A 60 660 55 HOH HOH . H 4 HOH A 61 661 34 HOH HOH . H 4 HOH A 62 662 32 HOH HOH . H 4 HOH A 63 663 28 HOH HOH . H 4 HOH A 64 664 104 HOH HOH . H 4 HOH A 65 665 11 HOH HOH . H 4 HOH A 66 666 78 HOH HOH . H 4 HOH A 67 667 41 HOH HOH . H 4 HOH A 68 668 5 HOH HOH . H 4 HOH A 69 669 21 HOH HOH . H 4 HOH A 70 670 49 HOH HOH . H 4 HOH A 71 671 33 HOH HOH . H 4 HOH A 72 672 54 HOH HOH . H 4 HOH A 73 673 87 HOH HOH . H 4 HOH A 74 674 29 HOH HOH . H 4 HOH A 75 675 143 HOH HOH . H 4 HOH A 76 676 81 HOH HOH . H 4 HOH A 77 677 60 HOH HOH . H 4 HOH A 78 678 46 HOH HOH . H 4 HOH A 79 679 48 HOH HOH . H 4 HOH A 80 680 26 HOH HOH . H 4 HOH A 81 681 4 HOH HOH . H 4 HOH A 82 682 52 HOH HOH . H 4 HOH A 83 683 90 HOH HOH . H 4 HOH A 84 684 44 HOH HOH . H 4 HOH A 85 685 63 HOH HOH . H 4 HOH A 86 686 19 HOH HOH . H 4 HOH A 87 687 96 HOH HOH . H 4 HOH A 88 688 31 HOH HOH . H 4 HOH A 89 689 98 HOH HOH . H 4 HOH A 90 690 88 HOH HOH . H 4 HOH A 91 691 70 HOH HOH . H 4 HOH A 92 692 122 HOH HOH . H 4 HOH A 93 693 110 HOH HOH . H 4 HOH A 94 694 50 HOH HOH . H 4 HOH A 95 695 84 HOH HOH . H 4 HOH A 96 696 94 HOH HOH . H 4 HOH A 97 697 114 HOH HOH . H 4 HOH A 98 698 141 HOH HOH . H 4 HOH A 99 699 101 HOH HOH . H 4 HOH A 100 700 138 HOH HOH . H 4 HOH A 101 701 92 HOH HOH . H 4 HOH A 102 702 142 HOH HOH . H 4 HOH A 103 703 123 HOH HOH . H 4 HOH A 104 704 125 HOH HOH . H 4 HOH A 105 705 66 HOH HOH . H 4 HOH A 106 706 145 HOH HOH . H 4 HOH A 107 707 74 HOH HOH . H 4 HOH A 108 708 79 HOH HOH . H 4 HOH A 109 709 64 HOH HOH . H 4 HOH A 110 710 139 HOH HOH . H 4 HOH A 111 711 120 HOH HOH . H 4 HOH A 112 712 58 HOH HOH . H 4 HOH A 113 713 147 HOH HOH . H 4 HOH A 114 714 73 HOH HOH . H 4 HOH A 115 715 69 HOH HOH . H 4 HOH A 116 716 85 HOH HOH . H 4 HOH A 117 717 135 HOH HOH . H 4 HOH A 118 718 126 HOH HOH . H 4 HOH A 119 719 89 HOH HOH . H 4 HOH A 120 720 40 HOH HOH . H 4 HOH A 121 721 102 HOH HOH . H 4 HOH A 122 722 86 HOH HOH . H 4 HOH A 123 723 53 HOH HOH . H 4 HOH A 124 724 30 HOH HOH . H 4 HOH A 125 725 136 HOH HOH . H 4 HOH A 126 726 82 HOH HOH . H 4 HOH A 127 727 68 HOH HOH . H 4 HOH A 128 728 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 7WY . . . B 2 -18.263 -4.515 -8.336 1 18.21 ? C10 7WY 501 A 1 HETATM 2 C C13 7WY . . . B 2 -19.408 -2.747 -6.513 1 20.31 ? C13 7WY 501 A 1 HETATM 3 C C15 7WY . . . B 2 -19.457 -3.832 -8.671 1 19.92 ? C15 7WY 501 A 1 HETATM 4 C C17 7WY . . . B 2 -22.009 -2.836 -9.115 1 36.24 ? C17 7WY 501 A 1 HETATM 5 C C21 7WY . . . B 2 -21.566 -1.101 -7.52 1 38.35 ? C21 7WY 501 A 1 HETATM 6 C C24 7WY . . . B 2 -17.248 -3.463 -10.847 1 27.45 ? C24 7WY 501 A 1 HETATM 7 C C26 7WY . . . B 2 -17.116 -3.797 -13.23 1 30.37 ? C26 7WY 501 A 1 HETATM 8 C C28 7WY . . . B 2 -17.593 -5.659 -11.777 1 30.63 ? C28 7WY 501 A 1 HETATM 9 C C01 7WY . . . B 2 -15.35 -3.056 -5.182 1 30.73 ? C01 7WY 501 A 1 HETATM 10 C C02 7WY . . . B 2 -15.417 -4.425 -5.813 1 25.94 ? C02 7WY 501 A 1 HETATM 11 C C03 7WY . . . B 2 -16.439 -4.971 -6.665 1 25.33 ? C03 7WY 501 A 1 HETATM 12 N N04 7WY . . . B 2 -16.053 -6.183 -6.964 1 20.45 ? N04 7WY 501 A 1 HETATM 13 N N05 7WY . . . B 2 -14.842 -6.433 -6.351 1 14.71 ? N05 7WY 501 A 1 HETATM 14 N N06 7WY . . . B 2 -14.475 -5.354 -5.664 1 26.74 ? N06 7WY 501 A 1 HETATM 15 C C07 7WY . . . B 2 -16.952 -7.038 -7.695 1 27.61 ? C07 7WY 501 A 1 HETATM 16 C C08 7WY . . . B 2 -17.048 -6.653 -9.154 1 30.76 ? C08 7WY 501 A 1 HETATM 17 N N09 7WY . . . B 2 -17.67 -5.377 -9.351 1 26.92 ? N09 7WY 501 A 1 HETATM 18 C C11 7WY . . . B 2 -17.641 -4.321 -7.127 1 16.96 ? C11 7WY 501 A 1 HETATM 19 C C12 7WY . . . B 2 -18.234 -3.423 -6.185 1 18.06 ? C12 7WY 501 A 1 HETATM 20 C C14 7WY . . . B 2 -20.028 -2.954 -7.754 1 22.7 ? C14 7WY 501 A 1 HETATM 21 C C16 7WY . . . B 2 -21.196 -2.296 -8.115 1 32.89 ? C16 7WY 501 A 1 HETATM 22 C C18 7WY . . . B 2 -23.171 -2.174 -9.487 1 37.56 ? C18 7WY 501 A 1 HETATM 23 C C19 7WY . . . B 2 -23.503 -0.978 -8.858 1 41.94 ? C19 7WY 501 A 1 HETATM 24 N N20 7WY . . . B 2 -22.702 -0.478 -7.9 1 41.4 ? N20 7WY 501 A 1 HETATM 25 N N22 7WY . . . B 2 -24.691 -0.285 -9.226 1 42.3 ? N22 7WY 501 A 1 HETATM 26 C C23 7WY . . . B 2 -17.528 -4.82 -10.667 1 27.83 ? C23 7WY 501 A 1 HETATM 27 C C25 7WY . . . B 2 -17.046 -2.949 -12.129 1 29.24 ? C25 7WY 501 A 1 HETATM 28 C C27 7WY . . . B 2 -17.386 -5.146 -13.057 1 28.57 ? C27 7WY 501 A 1 HETATM 29 CL CL 7WY . . . B 2 -16.863 -3.183 -14.841 1 35.34 ? CL 7WY 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #