data_5U6W # _model_server_result.job_id Sh5JbdWZXF9eq9owEgaJkQ _model_server_result.datetime_utc '2024-11-18 10:25:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u6w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5U6W # _exptl.entry_id 5U6W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.98 _cell.angle_gamma 90 _cell.entry_id 5U6W _cell.length_a 44.365 _cell.length_b 51.152 _cell.length_c 78.92 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U6W _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 342 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 358 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.653 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 149 n n CHA C4D HEM doub 150 n n CHA HHA HEM sing 151 n n CHB C4A HEM sing 152 n n CHB C1B HEM doub 153 n n CHB HHB HEM sing 154 n n CHC C4B HEM sing 155 n n CHC C1C HEM doub 156 n n CHC HHC HEM sing 157 n n CHD C4C HEM doub 158 n n CHD C1D HEM sing 159 n n CHD HHD HEM sing 160 n n C1A C2A HEM doub 161 n y C1A NA HEM sing 162 n y C2A C3A HEM sing 163 n y C2A CAA HEM sing 164 n n C3A C4A HEM doub 165 n y C3A CMA HEM sing 166 n n C4A NA HEM sing 167 n y CMA HMA HEM sing 168 n n CMA HMAA HEM sing 169 n n CMA HMAB HEM sing 170 n n CAA CBA HEM sing 171 n n CAA HAA HEM sing 172 n n CAA HAAA HEM sing 173 n n CBA CGA HEM sing 174 n n CBA HBA HEM sing 175 n n CBA HBAA HEM sing 176 n n CGA O1A HEM doub 177 n n CGA O2A HEM sing 178 n n C1B C2B HEM sing 179 n n C1B NB HEM sing 180 n n C2B C3B HEM doub 181 n n C2B CMB HEM sing 182 n n C3B C4B HEM sing 183 n n C3B CAB HEM sing 184 n n C4B NB HEM doub 185 n n CMB HMB HEM sing 186 n n CMB HMBA HEM sing 187 n n CMB HMBB HEM sing 188 n n CAB CBB HEM doub 189 n n CAB HAB HEM sing 190 n n CBB HBB HEM sing 191 n n CBB HBBA HEM sing 192 n n C1C C2C HEM sing 193 n y C1C NC HEM sing 194 n y C2C C3C HEM doub 195 n y C2C CMC HEM sing 196 n n C3C C4C HEM sing 197 n y C3C CAC HEM sing 198 n n C4C NC HEM sing 199 n y CMC HMC HEM sing 200 n n CMC HMCA HEM sing 201 n n CMC HMCB HEM sing 202 n n CAC CBC HEM doub 203 n n CAC HAC HEM sing 204 n n CBC HBC HEM sing 205 n n CBC HBCA HEM sing 206 n n C1D C2D HEM sing 207 n n C1D ND HEM doub 208 n n C2D C3D HEM doub 209 n n C2D CMD HEM sing 210 n n C3D C4D HEM sing 211 n n C3D CAD HEM sing 212 n n C4D ND HEM sing 213 n n CMD HMD HEM sing 214 n n CMD HMDA HEM sing 215 n n CMD HMDB HEM sing 216 n n CAD CBD HEM sing 217 n n CAD HAD HEM sing 218 n n CAD HADA HEM sing 219 n n CBD CGD HEM sing 220 n n CBD HBD HEM sing 221 n n CBD HBDA HEM sing 222 n n CGD O1D HEM doub 223 n n CGD O2D HEM sing 224 n n O2A H2A HEM sing 225 n n O2D H2D HEM sing 226 n n FE NA HEM sing 227 n n FE NB HEM sing 228 n n FE NC HEM sing 229 n n FE ND HEM sing 230 n n # _atom_sites.entry_id 5U6W _atom_sites.fract_transf_matrix[1][1] 0.02254 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00078 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01955 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 501 HEM HEM . C 3 81P A 1 502 1 81P LIG . D 4 CL A 1 503 1 CL CL . E 5 HOH A 1 601 63 HOH HOH . E 5 HOH A 2 602 23 HOH HOH . E 5 HOH A 3 603 24 HOH HOH . E 5 HOH A 4 604 8 HOH HOH . E 5 HOH A 5 605 41 HOH HOH . E 5 HOH A 6 606 29 HOH HOH . E 5 HOH A 7 607 18 HOH HOH . E 5 HOH A 8 608 36 HOH HOH . E 5 HOH A 9 609 37 HOH HOH . E 5 HOH A 10 610 49 HOH HOH . E 5 HOH A 11 611 69 HOH HOH . E 5 HOH A 12 612 82 HOH HOH . E 5 HOH A 13 613 12 HOH HOH . E 5 HOH A 14 614 52 HOH HOH . E 5 HOH A 15 615 79 HOH HOH . E 5 HOH A 16 616 64 HOH HOH . E 5 HOH A 17 617 54 HOH HOH . E 5 HOH A 18 618 22 HOH HOH . E 5 HOH A 19 619 61 HOH HOH . E 5 HOH A 20 620 67 HOH HOH . E 5 HOH A 21 621 47 HOH HOH . E 5 HOH A 22 622 68 HOH HOH . E 5 HOH A 23 623 21 HOH HOH . E 5 HOH A 24 624 17 HOH HOH . E 5 HOH A 25 625 27 HOH HOH . E 5 HOH A 26 626 50 HOH HOH . E 5 HOH A 27 627 43 HOH HOH . E 5 HOH A 28 628 31 HOH HOH . E 5 HOH A 29 629 5 HOH HOH . E 5 HOH A 30 630 30 HOH HOH . E 5 HOH A 31 631 9 HOH HOH . E 5 HOH A 32 632 77 HOH HOH . E 5 HOH A 33 633 15 HOH HOH . E 5 HOH A 34 634 13 HOH HOH . E 5 HOH A 35 635 53 HOH HOH . E 5 HOH A 36 636 42 HOH HOH . E 5 HOH A 37 637 81 HOH HOH . E 5 HOH A 38 638 75 HOH HOH . E 5 HOH A 39 639 73 HOH HOH . E 5 HOH A 40 640 58 HOH HOH . E 5 HOH A 41 641 35 HOH HOH . E 5 HOH A 42 642 48 HOH HOH . E 5 HOH A 43 643 33 HOH HOH . E 5 HOH A 44 644 6 HOH HOH . E 5 HOH A 45 645 46 HOH HOH . E 5 HOH A 46 646 44 HOH HOH . E 5 HOH A 47 647 10 HOH HOH . E 5 HOH A 48 648 1 HOH HOH . E 5 HOH A 49 649 56 HOH HOH . E 5 HOH A 50 650 16 HOH HOH . E 5 HOH A 51 651 51 HOH HOH . E 5 HOH A 52 652 28 HOH HOH . E 5 HOH A 53 653 40 HOH HOH . E 5 HOH A 54 654 78 HOH HOH . E 5 HOH A 55 655 7 HOH HOH . E 5 HOH A 56 656 39 HOH HOH . E 5 HOH A 57 657 85 HOH HOH . E 5 HOH A 58 658 80 HOH HOH . E 5 HOH A 59 659 4 HOH HOH . E 5 HOH A 60 660 72 HOH HOH . E 5 HOH A 61 661 26 HOH HOH . E 5 HOH A 62 662 2 HOH HOH . E 5 HOH A 63 663 14 HOH HOH . E 5 HOH A 64 664 60 HOH HOH . E 5 HOH A 65 665 65 HOH HOH . E 5 HOH A 66 666 34 HOH HOH . E 5 HOH A 67 667 71 HOH HOH . E 5 HOH A 68 668 62 HOH HOH . E 5 HOH A 69 669 66 HOH HOH . E 5 HOH A 70 670 32 HOH HOH . E 5 HOH A 71 671 25 HOH HOH . E 5 HOH A 72 672 11 HOH HOH . E 5 HOH A 73 673 83 HOH HOH . E 5 HOH A 74 674 20 HOH HOH . E 5 HOH A 75 675 3 HOH HOH . E 5 HOH A 76 676 57 HOH HOH . E 5 HOH A 77 677 19 HOH HOH . E 5 HOH A 78 678 38 HOH HOH . E 5 HOH A 79 679 59 HOH HOH . E 5 HOH A 80 680 76 HOH HOH . E 5 HOH A 81 681 70 HOH HOH . E 5 HOH A 82 682 74 HOH HOH . E 5 HOH A 83 683 55 HOH HOH . E 5 HOH A 84 684 84 HOH HOH . E 5 HOH A 85 685 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 0.716 -1.129 16.152 1 31.94 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . B 2 2.814 -5.178 17.834 1 33.51 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . B 2 5.925 -4.976 14.127 1 31.19 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . B 2 4.727 -0.356 13.449 1 33.31 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . B 2 0.954 -2.258 16.909 1 31.29 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . B 2 0.163 -2.749 18.023 1 33.36 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . B 2 0.744 -3.864 18.483 1 33.49 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . B 2 1.929 -4.125 17.686 1 32.87 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . B 2 0.24 -4.722 19.665 1 33.71 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . B 2 -1.131 -2.11 18.585 1 29.74 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . B 2 -0.798 -0.904 19.46 1 30.77 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . B 2 -2.053 -0.371 20.106 1 29.26 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . B 2 -1.955 0.579 20.926 1 29 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . B 2 -3.157 -0.896 19.806 1 29.83 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . B 2 3.817 -5.522 16.95 1 32.91 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . B 2 4.612 -6.739 16.96 1 32.88 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . B 2 5.476 -6.679 15.925 1 32.52 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . B 2 5.247 -5.422 15.243 1 32.2 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . B 2 4.412 -7.843 18.026 1 33.18 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . B 2 6.57 -7.657 15.418 1 11.7 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . B 2 6.848 -8.865 15.918 1 12.22 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . B 2 5.835 -3.724 13.567 1 29.89 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . B 2 6.46 -3.287 12.331 1 28.74 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . B 2 6.131 -1.994 12.14 1 30.14 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . B 2 5.289 -1.597 13.253 1 31.53 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . B 2 7.334 -4.237 11.479 1 27.81 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . B 2 6.486 -0.989 11.012 1 18.45 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . B 2 7.27 -1.227 9.955 1 18.3 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . B 2 3.536 -0.107 14.094 1 33.81 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . B 2 2.828 1.152 14.099 1 33.92 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . B 2 1.578 0.901 14.944 1 31.71 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . B 2 1.645 -0.478 15.364 1 33.11 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . B 2 3.229 2.475 13.41 1 33.74 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . B 2 0.468 1.91 15.265 1 28.38 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . B 2 -0.675 1.568 14.321 1 25.55 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . B 2 -1.912 2.321 14.703 1 23.09 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . B 2 -2.897 2.251 13.93 1 22.04 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . B 2 -1.907 2.998 15.761 1 22.52 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . B 2 2.021 -3.12 16.739 1 32.45 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . B 2 4.236 -4.748 15.89 1 32.42 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . B 2 5.131 -2.672 14.1 1 30.71 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . B 2 2.813 -1.03 14.846 1 34.51 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . B 2 3.576 -2.879 15.429 1 31.68 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #