data_5U7F # _model_server_result.job_id 4MmsJe97exrNIAuRNRWdvw _model_server_result.datetime_utc '2024-10-20 20:52:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u7f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5U7F # _exptl.entry_id 5U7F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.87 _cell.angle_gamma 90 _cell.entry_id 5U7F _cell.length_a 54.6 _cell.length_b 43.09 _cell.length_c 57.23 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U7F _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 54.6 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 75 A CYS 75 1_555 A SG CYS 104 A CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc1 A O THR 40 A THR 40 1_555 F CO CO . A CO 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc2 A OE2 GLU 56 A GLU 56 1_555 D CO CO . A CO 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc3 A OE1 GLU 56 A GLU 56 1_555 E CO CO . A CO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc4 A OE2 GLU 60 A GLU 60 1_555 E CO CO . A CO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc5 A OE2 GLU 60 A GLU 60 1_555 F CO CO . A CO 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc6 A OE2 GLU 117 A GLU 117 1_555 E CO CO . A CO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc7 A OE1 GLU 117 A GLU 117 1_555 F CO CO . A CO 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc8 C O4 SO4 . A SO4 202 1_555 D CO CO . A CO 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc9 C O3 SO4 . A SO4 202 1_555 E CO CO . A CO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc10 C O3 SO4 . A SO4 202 1_555 F CO CO . A CO 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc11 C O2 SO4 . A SO4 202 1_555 G CO CO . A CO 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc12 D CO CO . A CO 203 1_555 H O HOH . A HOH 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc13 D CO CO . A CO 203 1_555 H O HOH . A HOH 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc14 D CO CO . A CO 203 1_555 H O HOH . A HOH 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc15 D CO CO . A CO 203 1_555 H O HOH . A HOH 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc16 E CO CO . A CO 204 1_555 H O HOH . A HOH 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc17 E CO CO . A CO 204 1_555 H O HOH . A HOH 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc18 F CO CO . A CO 205 1_555 H O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc19 F CO CO . A CO 205 1_555 H O HOH . A HOH 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc20 G CO CO . A CO 206 1_555 H O HOH . A HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc21 G CO CO . A CO 206 1_555 H O HOH . A HOH 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc22 G CO CO . A CO 206 1_555 H O HOH . A HOH 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc23 G CO CO . A CO 206 1_555 H O HOH . A HOH 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5U7F _atom_sites.fract_transf_matrix[1][1] 0.018315 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000598 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017483 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 1 SO4 SO4 . C 2 SO4 A 1 202 2 SO4 SO4 . D 3 CO A 1 203 1 CO CO . E 3 CO A 1 204 2 CO CO . F 3 CO A 1 205 3 CO CO . G 3 CO A 1 206 4 CO CO . H 4 HOH A 1 301 87 HOH HOH . H 4 HOH A 2 302 85 HOH HOH . H 4 HOH A 3 303 126 HOH HOH . H 4 HOH A 4 304 122 HOH HOH . H 4 HOH A 5 305 51 HOH HOH . H 4 HOH A 6 306 36 HOH HOH . H 4 HOH A 7 307 56 HOH HOH . H 4 HOH A 8 308 132 HOH HOH . H 4 HOH A 9 309 113 HOH HOH . H 4 HOH A 10 310 15 HOH HOH . H 4 HOH A 11 311 43 HOH HOH . H 4 HOH A 12 312 94 HOH HOH . H 4 HOH A 13 313 118 HOH HOH . H 4 HOH A 14 314 88 HOH HOH . H 4 HOH A 15 315 59 HOH HOH . H 4 HOH A 16 316 93 HOH HOH . H 4 HOH A 17 317 18 HOH HOH . H 4 HOH A 18 318 55 HOH HOH . H 4 HOH A 19 319 20 HOH HOH . H 4 HOH A 20 320 27 HOH HOH . H 4 HOH A 21 321 76 HOH HOH . H 4 HOH A 22 322 53 HOH HOH . H 4 HOH A 23 323 21 HOH HOH . H 4 HOH A 24 324 26 HOH HOH . H 4 HOH A 25 325 116 HOH HOH . H 4 HOH A 26 326 5 HOH HOH . H 4 HOH A 27 327 12 HOH HOH . H 4 HOH A 28 328 64 HOH HOH . H 4 HOH A 29 329 127 HOH HOH . H 4 HOH A 30 330 80 HOH HOH . H 4 HOH A 31 331 45 HOH HOH . H 4 HOH A 32 332 10 HOH HOH . H 4 HOH A 33 333 110 HOH HOH . H 4 HOH A 34 334 96 HOH HOH . H 4 HOH A 35 335 28 HOH HOH . H 4 HOH A 36 336 50 HOH HOH . H 4 HOH A 37 337 73 HOH HOH . H 4 HOH A 38 338 3 HOH HOH . H 4 HOH A 39 339 42 HOH HOH . H 4 HOH A 40 340 14 HOH HOH . H 4 HOH A 41 341 2 HOH HOH . H 4 HOH A 42 342 91 HOH HOH . H 4 HOH A 43 343 62 HOH HOH . H 4 HOH A 44 344 7 HOH HOH . H 4 HOH A 45 345 77 HOH HOH . H 4 HOH A 46 346 75 HOH HOH . H 4 HOH A 47 347 4 HOH HOH . H 4 HOH A 48 348 123 HOH HOH . H 4 HOH A 49 349 13 HOH HOH . H 4 HOH A 50 350 131 HOH HOH . H 4 HOH A 51 351 66 HOH HOH . H 4 HOH A 52 352 49 HOH HOH . H 4 HOH A 53 353 17 HOH HOH . H 4 HOH A 54 354 6 HOH HOH . H 4 HOH A 55 355 29 HOH HOH . H 4 HOH A 56 356 58 HOH HOH . H 4 HOH A 57 357 60 HOH HOH . H 4 HOH A 58 358 102 HOH HOH . H 4 HOH A 59 359 44 HOH HOH . H 4 HOH A 60 360 33 HOH HOH . H 4 HOH A 61 361 11 HOH HOH . H 4 HOH A 62 362 81 HOH HOH . H 4 HOH A 63 363 1 HOH HOH . H 4 HOH A 64 364 52 HOH HOH . H 4 HOH A 65 365 37 HOH HOH . H 4 HOH A 66 366 67 HOH HOH . H 4 HOH A 67 367 114 HOH HOH . H 4 HOH A 68 368 119 HOH HOH . H 4 HOH A 69 369 106 HOH HOH . H 4 HOH A 70 370 78 HOH HOH . H 4 HOH A 71 371 22 HOH HOH . H 4 HOH A 72 372 16 HOH HOH . H 4 HOH A 73 373 48 HOH HOH . H 4 HOH A 74 374 134 HOH HOH . H 4 HOH A 75 375 65 HOH HOH . H 4 HOH A 76 376 38 HOH HOH . H 4 HOH A 77 377 25 HOH HOH . H 4 HOH A 78 378 108 HOH HOH . H 4 HOH A 79 379 71 HOH HOH . H 4 HOH A 80 380 23 HOH HOH . H 4 HOH A 81 381 90 HOH HOH . H 4 HOH A 82 382 109 HOH HOH . H 4 HOH A 83 383 8 HOH HOH . H 4 HOH A 84 384 99 HOH HOH . H 4 HOH A 85 385 31 HOH HOH . H 4 HOH A 86 386 133 HOH HOH . H 4 HOH A 87 387 125 HOH HOH . H 4 HOH A 88 388 86 HOH HOH . H 4 HOH A 89 389 61 HOH HOH . H 4 HOH A 90 390 129 HOH HOH . H 4 HOH A 91 391 9 HOH HOH . H 4 HOH A 92 392 35 HOH HOH . H 4 HOH A 93 393 83 HOH HOH . H 4 HOH A 94 394 63 HOH HOH . H 4 HOH A 95 395 46 HOH HOH . H 4 HOH A 96 396 130 HOH HOH . H 4 HOH A 97 397 135 HOH HOH . H 4 HOH A 98 398 72 HOH HOH . H 4 HOH A 99 399 105 HOH HOH . H 4 HOH A 100 400 34 HOH HOH . H 4 HOH A 101 401 32 HOH HOH . H 4 HOH A 102 402 120 HOH HOH . H 4 HOH A 103 403 92 HOH HOH . H 4 HOH A 104 404 68 HOH HOH . H 4 HOH A 105 405 117 HOH HOH . H 4 HOH A 106 406 121 HOH HOH . H 4 HOH A 107 407 111 HOH HOH . H 4 HOH A 108 408 101 HOH HOH . H 4 HOH A 109 409 98 HOH HOH . H 4 HOH A 110 410 107 HOH HOH . H 4 HOH A 111 411 97 HOH HOH . H 4 HOH A 112 412 41 HOH HOH . H 4 HOH A 113 413 95 HOH HOH . H 4 HOH A 114 414 100 HOH HOH . H 4 HOH A 115 415 47 HOH HOH . H 4 HOH A 116 416 103 HOH HOH . H 4 HOH A 117 417 74 HOH HOH . H 4 HOH A 118 418 24 HOH HOH . H 4 HOH A 119 419 115 HOH HOH . H 4 HOH A 120 420 39 HOH HOH . H 4 HOH A 121 421 30 HOH HOH . H 4 HOH A 122 422 19 HOH HOH . H 4 HOH A 123 423 70 HOH HOH . H 4 HOH A 124 424 82 HOH HOH . H 4 HOH A 125 425 112 HOH HOH . H 4 HOH A 126 426 40 HOH HOH . H 4 HOH A 127 427 128 HOH HOH . H 4 HOH A 128 428 79 HOH HOH . H 4 HOH A 129 429 104 HOH HOH . H 4 HOH A 130 430 124 HOH HOH . H 4 HOH A 131 431 84 HOH HOH . H 4 HOH A 132 432 69 HOH HOH . H 4 HOH A 133 433 89 HOH HOH . H 4 HOH A 134 434 57 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 11.279 _atom_site.Cartn_y -2.66 _atom_site.Cartn_z 8.994 _atom_site.occupancy 0.77 _atom_site.B_iso_or_equiv 23.18 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 205 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #