data_5U7R # _model_server_result.job_id ZJKhHVlcy8h5SI3rm8BUsw _model_server_result.datetime_utc '2024-10-18 16:31:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":500}' # _entry.id 5U7R # _exptl.entry_id 5U7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 412.48 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(1s,4s)-4-(4-fluorophenyl)-4-hydroxy-6'-(5-methyl-1H-pyrazol-4-yl)-1'H-spiro[cyclohexane-1,2'-thieno[3,2-d]pyrimidin]-4'(3'H)-one" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.03 _cell.angle_gamma 90 _cell.entry_id 5U7R _cell.length_a 90.201 _cell.length_b 146.137 _cell.length_c 110.901 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,H,I,L 1 1 B,C,F,G,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C21 H21 F N4 O2 S' _chem_comp.formula_weight 412.48 _chem_comp.id 81G _chem_comp.mon_nstd_flag . _chem_comp.name "(1s,4s)-4-(4-fluorophenyl)-4-hydroxy-6'-(5-methyl-1H-pyrazol-4-yl)-1'H-spiro[cyclohexane-1,2'-thieno[3,2-d]pyrimidin]-4'(3'H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F23 C22 81G sing 1 n n C21 C22 81G doub 2 n y C21 C20 81G sing 3 n y C22 C24 81G sing 4 n y C20 C19 81G doub 5 n y C1 C2 81G sing 6 n n C24 C25 81G doub 7 n y C19 C25 81G sing 8 n y C19 C15 81G sing 9 n n C2 N3 81G sing 10 n y C2 C7 81G doub 11 n y N3 N5 81G sing 12 n y C14 C15 81G sing 13 n n C14 C13 81G sing 14 n n C15 C17 81G sing 15 n n C15 O16 81G sing 16 n n C9 C8 81G doub 17 n y C9 C10 81G sing 18 n y C7 C8 81G sing 19 n n C7 C6 81G sing 20 n y N5 C6 81G doub 21 n y N11 C10 81G sing 22 n n N11 C12 81G sing 23 n n C17 C18 81G sing 24 n n C13 C12 81G sing 25 n n C8 S30 81G sing 26 n y C10 C29 81G doub 27 n y C12 C18 81G sing 28 n n C12 N26 81G sing 29 n n C29 S30 81G sing 30 n y C29 C27 81G sing 31 n n N26 C27 81G sing 32 n n C27 O28 81G doub 33 n n N3 H1 81G sing 34 n n C6 H2 81G sing 35 n n C13 H3 81G sing 36 n n C13 H4 81G sing 37 n n C17 H5 81G sing 38 n n C17 H6 81G sing 39 n n C20 H7 81G sing 40 n n C21 H8 81G sing 41 n n C24 H9 81G sing 42 n n C1 H10 81G sing 43 n n C1 H11 81G sing 44 n n C1 H12 81G sing 45 n n C9 H13 81G sing 46 n n N11 H14 81G sing 47 n n C14 H15 81G sing 48 n n C14 H16 81G sing 49 n n O16 H17 81G sing 50 n n C18 H18 81G sing 51 n n C18 H19 81G sing 52 n n C25 H20 81G sing 53 n n N26 H21 81G sing 54 n n # _atom_sites.entry_id 5U7R _atom_sites.fract_transf_matrix[1][1] 0.011086 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001171 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006843 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009067 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 81G A 1 500 500 81G LIG . F 2 81G B 1 500 500 81G LIG . G 2 81G C 1 500 500 81G LIG . H 2 81G D 1 500 500 81G LIG . I 3 HOH A 1 601 536 HOH HOH . I 3 HOH A 2 602 518 HOH HOH . I 3 HOH A 3 603 531 HOH HOH . I 3 HOH A 4 604 535 HOH HOH . I 3 HOH A 5 605 515 HOH HOH . I 3 HOH A 6 606 533 HOH HOH . I 3 HOH A 7 607 520 HOH HOH . I 3 HOH A 8 608 507 HOH HOH . I 3 HOH A 9 609 534 HOH HOH . I 3 HOH A 10 610 506 HOH HOH . I 3 HOH A 11 611 523 HOH HOH . I 3 HOH A 12 612 501 HOH HOH . I 3 HOH A 13 613 519 HOH HOH . I 3 HOH A 14 614 512 HOH HOH . I 3 HOH A 15 615 517 HOH HOH . I 3 HOH A 16 616 502 HOH HOH . I 3 HOH A 17 617 508 HOH HOH . I 3 HOH A 18 618 514 HOH HOH . I 3 HOH A 19 619 505 HOH HOH . I 3 HOH A 20 620 516 HOH HOH . I 3 HOH A 21 621 532 HOH HOH . I 3 HOH A 22 622 526 HOH HOH . I 3 HOH A 23 623 522 HOH HOH . J 3 HOH B 1 601 510 HOH HOH . J 3 HOH B 2 602 538 HOH HOH . J 3 HOH B 3 603 537 HOH HOH . J 3 HOH B 4 604 513 HOH HOH . K 3 HOH C 1 601 527 HOH HOH . K 3 HOH C 2 602 504 HOH HOH . K 3 HOH C 3 603 521 HOH HOH . K 3 HOH C 4 604 503 HOH HOH . L 3 HOH D 1 601 540 HOH HOH . L 3 HOH D 2 602 530 HOH HOH . L 3 HOH D 3 603 528 HOH HOH . L 3 HOH D 4 604 509 HOH HOH . L 3 HOH D 5 605 511 HOH HOH . L 3 HOH D 6 606 529 HOH HOH . L 3 HOH D 7 607 524 HOH HOH . L 3 HOH D 8 608 525 HOH HOH . L 3 HOH D 9 609 539 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 81G . . . E 2 44.654 -22.876 2.981 1 114.99 ? N3 81G 500 A 1 HETATM 2 C C6 81G . . . E 2 44.981 -22.117 5.02 1 106.77 ? C6 81G 500 A 1 HETATM 3 C C7 81G . . . E 2 44.41 -21.087 4.243 1 108.26 ? C7 81G 500 A 1 HETATM 4 C C8 81G . . . E 2 44.126 -19.73 4.777 1 104.47 ? C8 81G 500 A 1 HETATM 5 C C10 81G . . . E 2 43.498 -17.494 4.838 1 102.08 ? C10 81G 500 A 1 HETATM 6 C C13 81G . . . E 2 43.231 -13.777 4.774 1 109.31 ? C13 81G 500 A 1 HETATM 7 C C15 81G . . . E 2 40.894 -13.311 3.935 1 118.62 ? C15 81G 500 A 1 HETATM 8 C C17 81G . . . E 2 40.454 -14.703 4.402 1 113.78 ? C17 81G 500 A 1 HETATM 9 C C20 81G . . . E 2 40.189 -13.566 1.515 1 134.83 ? C20 81G 500 A 1 HETATM 10 C C21 81G . . . E 2 39.315 -13.286 0.475 1 143.87 ? C21 81G 500 A 1 HETATM 11 C C22 81G . . . E 2 38.219 -12.456 0.681 1 141.51 ? C22 81G 500 A 1 HETATM 12 C C24 81G . . . E 2 37.997 -11.903 1.933 1 140.59 ? C24 81G 500 A 1 HETATM 13 C C1 81G . . . E 2 43.667 -20.92 1.749 1 102.91 ? C1 81G 500 A 1 HETATM 14 C C2 81G . . . E 2 44.233 -21.6 2.965 1 108.53 ? C2 81G 500 A 1 HETATM 15 N N5 81G . . . E 2 45.115 -23.171 4.267 1 117.31 ? N5 81G 500 A 1 HETATM 16 C C9 81G . . . E 2 43.673 -18.638 4.095 1 102.58 ? C9 81G 500 A 1 HETATM 17 N N11 81G . . . E 2 43.065 -16.231 4.367 1 101.48 ? N11 81G 500 A 1 HETATM 18 C C12 81G . . . E 2 42.786 -15.143 5.331 1 106.63 ? C12 81G 500 A 1 HETATM 19 C C14 81G . . . E 2 42.383 -13.338 3.564 1 116.02 ? C14 81G 500 A 1 HETATM 20 O O16 81G . . . E 2 40.704 -12.358 4.987 1 116.74 ? O16 81G 500 A 1 HETATM 21 C C18 81G . . . E 2 41.272 -15.155 5.606 1 107.78 ? C18 81G 500 A 1 HETATM 22 C C19 81G . . . E 2 39.977 -13.005 2.768 1 127.92 ? C19 81G 500 A 1 HETATM 23 F F23 81G . . . E 2 37.368 -12.184 -0.332 1 148.33 ? F23 81G 500 A 1 HETATM 24 C C25 81G . . . E 2 38.873 -12.185 2.969 1 136.81 ? C25 81G 500 A 1 HETATM 25 N N26 81G . . . E 2 43.318 -15.377 6.674 1 103.99 ? N26 81G 500 A 1 HETATM 26 C C27 81G . . . E 2 43.773 -16.572 7.106 1 103.47 ? C27 81G 500 A 1 HETATM 27 O O28 81G . . . E 2 44.123 -16.698 8.262 1 104.72 ? O28 81G 500 A 1 HETATM 28 C C29 81G . . . E 2 43.853 -17.65 6.18 1 106.62 ? C29 81G 500 A 1 HETATM 29 S S30 81G . . . E 2 44.379 -19.299 6.462 1 106.66 ? S30 81G 500 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #