data_5U7V # _model_server_result.job_id td0kzFEb6qur6nfAUoWp6Q _model_server_result.datetime_utc '2024-12-27 03:15:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u7v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5U7V # _exptl.entry_id 5U7V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.46 _cell.angle_gamma 90 _cell.entry_id 5U7V _cell.length_a 53.83 _cell.length_b 51.91 _cell.length_c 69.46 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U7V _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 229 A CYS 229 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf2 A SG CYS 273 A CYS 273 1_555 A SG CYS 278 A CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf3 A SG CYS 333 A CYS 333 1_555 A SG CYS 357 A CYS 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 5U7V _atom_sites.fract_transf_matrix[1][1] 0.018577 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006201 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015178 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP A 1 501 1 AMP AMP . C 3 HOH A 1 601 260 HOH HOH . C 3 HOH A 2 602 206 HOH HOH . C 3 HOH A 3 603 110 HOH HOH . C 3 HOH A 4 604 282 HOH HOH . C 3 HOH A 5 605 237 HOH HOH . C 3 HOH A 6 606 267 HOH HOH . C 3 HOH A 7 607 288 HOH HOH . C 3 HOH A 8 608 36 HOH HOH . C 3 HOH A 9 609 275 HOH HOH . C 3 HOH A 10 610 257 HOH HOH . C 3 HOH A 11 611 250 HOH HOH . C 3 HOH A 12 612 6 HOH HOH . C 3 HOH A 13 613 69 HOH HOH . C 3 HOH A 14 614 313 HOH HOH . C 3 HOH A 15 615 215 HOH HOH . C 3 HOH A 16 616 258 HOH HOH . C 3 HOH A 17 617 304 HOH HOH . C 3 HOH A 18 618 217 HOH HOH . C 3 HOH A 19 619 9 HOH HOH . C 3 HOH A 20 620 219 HOH HOH . C 3 HOH A 21 621 303 HOH HOH . C 3 HOH A 22 622 49 HOH HOH . C 3 HOH A 23 623 314 HOH HOH . C 3 HOH A 24 624 193 HOH HOH . C 3 HOH A 25 625 251 HOH HOH . C 3 HOH A 26 626 277 HOH HOH . C 3 HOH A 27 627 81 HOH HOH . C 3 HOH A 28 628 20 HOH HOH . C 3 HOH A 29 629 228 HOH HOH . C 3 HOH A 30 630 310 HOH HOH . C 3 HOH A 31 631 29 HOH HOH . C 3 HOH A 32 632 141 HOH HOH . C 3 HOH A 33 633 281 HOH HOH . C 3 HOH A 34 634 43 HOH HOH . C 3 HOH A 35 635 5 HOH HOH . C 3 HOH A 36 636 255 HOH HOH . C 3 HOH A 37 637 242 HOH HOH . C 3 HOH A 38 638 276 HOH HOH . C 3 HOH A 39 639 15 HOH HOH . C 3 HOH A 40 640 1 HOH HOH . C 3 HOH A 41 641 118 HOH HOH . C 3 HOH A 42 642 24 HOH HOH . C 3 HOH A 43 643 253 HOH HOH . C 3 HOH A 44 644 91 HOH HOH . C 3 HOH A 45 645 12 HOH HOH . C 3 HOH A 46 646 139 HOH HOH . C 3 HOH A 47 647 2 HOH HOH . C 3 HOH A 48 648 261 HOH HOH . C 3 HOH A 49 649 138 HOH HOH . C 3 HOH A 50 650 279 HOH HOH . C 3 HOH A 51 651 18 HOH HOH . C 3 HOH A 52 652 84 HOH HOH . C 3 HOH A 53 653 231 HOH HOH . C 3 HOH A 54 654 241 HOH HOH . C 3 HOH A 55 655 294 HOH HOH . C 3 HOH A 56 656 13 HOH HOH . C 3 HOH A 57 657 247 HOH HOH . C 3 HOH A 58 658 8 HOH HOH . C 3 HOH A 59 659 254 HOH HOH . C 3 HOH A 60 660 299 HOH HOH . C 3 HOH A 61 661 232 HOH HOH . C 3 HOH A 62 662 65 HOH HOH . C 3 HOH A 63 663 27 HOH HOH . C 3 HOH A 64 664 121 HOH HOH . C 3 HOH A 65 665 70 HOH HOH . C 3 HOH A 66 666 158 HOH HOH . C 3 HOH A 67 667 55 HOH HOH . C 3 HOH A 68 668 68 HOH HOH . C 3 HOH A 69 669 252 HOH HOH . C 3 HOH A 70 670 119 HOH HOH . C 3 HOH A 71 671 93 HOH HOH . C 3 HOH A 72 672 124 HOH HOH . C 3 HOH A 73 673 67 HOH HOH . C 3 HOH A 74 674 74 HOH HOH . C 3 HOH A 75 675 263 HOH HOH . C 3 HOH A 76 676 290 HOH HOH . C 3 HOH A 77 677 271 HOH HOH . C 3 HOH A 78 678 221 HOH HOH . C 3 HOH A 79 679 120 HOH HOH . C 3 HOH A 80 680 42 HOH HOH . C 3 HOH A 81 681 31 HOH HOH . C 3 HOH A 82 682 38 HOH HOH . C 3 HOH A 83 683 286 HOH HOH . C 3 HOH A 84 684 17 HOH HOH . C 3 HOH A 85 685 44 HOH HOH . C 3 HOH A 86 686 22 HOH HOH . C 3 HOH A 87 687 56 HOH HOH . C 3 HOH A 88 688 11 HOH HOH . C 3 HOH A 89 689 223 HOH HOH . C 3 HOH A 90 690 264 HOH HOH . C 3 HOH A 91 691 293 HOH HOH . C 3 HOH A 92 692 191 HOH HOH . C 3 HOH A 93 693 311 HOH HOH . C 3 HOH A 94 694 149 HOH HOH . C 3 HOH A 95 695 104 HOH HOH . C 3 HOH A 96 696 97 HOH HOH . C 3 HOH A 97 697 94 HOH HOH . C 3 HOH A 98 698 220 HOH HOH . C 3 HOH A 99 699 114 HOH HOH . C 3 HOH A 100 700 37 HOH HOH . C 3 HOH A 101 701 14 HOH HOH . C 3 HOH A 102 702 301 HOH HOH . C 3 HOH A 103 703 309 HOH HOH . C 3 HOH A 104 704 259 HOH HOH . C 3 HOH A 105 705 4 HOH HOH . C 3 HOH A 106 706 136 HOH HOH . C 3 HOH A 107 707 235 HOH HOH . C 3 HOH A 108 708 272 HOH HOH . C 3 HOH A 109 709 96 HOH HOH . C 3 HOH A 110 710 218 HOH HOH . C 3 HOH A 111 711 287 HOH HOH . C 3 HOH A 112 712 61 HOH HOH . C 3 HOH A 113 713 88 HOH HOH . C 3 HOH A 114 714 26 HOH HOH . C 3 HOH A 115 715 16 HOH HOH . C 3 HOH A 116 716 57 HOH HOH . C 3 HOH A 117 717 244 HOH HOH . C 3 HOH A 118 718 122 HOH HOH . C 3 HOH A 119 719 296 HOH HOH . C 3 HOH A 120 720 280 HOH HOH . C 3 HOH A 121 721 163 HOH HOH . C 3 HOH A 122 722 32 HOH HOH . C 3 HOH A 123 723 307 HOH HOH . C 3 HOH A 124 724 298 HOH HOH . C 3 HOH A 125 725 10 HOH HOH . C 3 HOH A 126 726 62 HOH HOH . C 3 HOH A 127 727 222 HOH HOH . C 3 HOH A 128 728 153 HOH HOH . C 3 HOH A 129 729 240 HOH HOH . C 3 HOH A 130 730 234 HOH HOH . C 3 HOH A 131 731 204 HOH HOH . C 3 HOH A 132 732 28 HOH HOH . C 3 HOH A 133 733 129 HOH HOH . C 3 HOH A 134 734 41 HOH HOH . C 3 HOH A 135 735 285 HOH HOH . C 3 HOH A 136 736 95 HOH HOH . C 3 HOH A 137 737 212 HOH HOH . C 3 HOH A 138 738 229 HOH HOH . C 3 HOH A 139 739 77 HOH HOH . C 3 HOH A 140 740 186 HOH HOH . C 3 HOH A 141 741 7 HOH HOH . C 3 HOH A 142 742 225 HOH HOH . C 3 HOH A 143 743 30 HOH HOH . C 3 HOH A 144 744 98 HOH HOH . C 3 HOH A 145 745 302 HOH HOH . C 3 HOH A 146 746 180 HOH HOH . C 3 HOH A 147 747 297 HOH HOH . C 3 HOH A 148 748 278 HOH HOH . C 3 HOH A 149 749 236 HOH HOH . C 3 HOH A 150 750 265 HOH HOH . C 3 HOH A 151 751 312 HOH HOH . C 3 HOH A 152 752 270 HOH HOH . C 3 HOH A 153 753 211 HOH HOH . C 3 HOH A 154 754 289 HOH HOH . C 3 HOH A 155 755 214 HOH HOH . C 3 HOH A 156 756 210 HOH HOH . C 3 HOH A 157 757 269 HOH HOH . C 3 HOH A 158 758 308 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 24.684 33.6 55.453 1 76.88 ? P AMP 501 A 1 HETATM 2 O O1P AMP . . . B 2 25.721 32.986 54.536 1 81.16 ? O1P AMP 501 A 1 HETATM 3 O O2P AMP . . . B 2 25.077 34.925 56.081 1 72.43 ? O2P AMP 501 A 1 HETATM 4 O O3P AMP . . . B 2 23.296 33.623 54.859 1 77.04 ? O3P AMP 501 A 1 HETATM 5 O O5' AMP . . . B 2 24.624 32.533 56.679 1 88.2 ? O5' AMP 501 A 1 HETATM 6 C C5' AMP . . . B 2 25.808 31.936 57.265 1 86.76 ? C5' AMP 501 A 1 HETATM 7 C C4' AMP . . . B 2 25.728 32.036 58.801 1 83.81 ? C4' AMP 501 A 1 HETATM 8 O O4' AMP . . . B 2 26.173 30.9 59.571 1 73.99 ? O4' AMP 501 A 1 HETATM 9 C C3' AMP . . . B 2 26.537 33.198 59.367 1 79.44 ? C3' AMP 501 A 1 HETATM 10 O O3' AMP . . . B 2 25.657 34.31 59.499 1 85.64 ? O3' AMP 501 A 1 HETATM 11 C C2' AMP . . . B 2 27.029 32.735 60.726 1 77.52 ? C2' AMP 501 A 1 HETATM 12 O O2' AMP . . . B 2 26.739 33.706 61.746 1 73.73 ? O2' AMP 501 A 1 HETATM 13 C C1' AMP . . . B 2 26.273 31.418 60.916 1 71.45 ? C1' AMP 501 A 1 HETATM 14 N N9 AMP . . . B 2 26.896 30.538 61.96 1 56.79 ? N9 AMP 501 A 1 HETATM 15 C C8 AMP . . . B 2 28.155 30.042 62.027 1 52.39 ? C8 AMP 501 A 1 HETATM 16 N N7 AMP . . . B 2 28.346 29.29 63.146 1 44.44 ? N7 AMP 501 A 1 HETATM 17 C C5 AMP . . . B 2 27.196 29.313 63.818 1 42.71 ? C5 AMP 501 A 1 HETATM 18 C C6 AMP . . . B 2 26.699 28.732 65.079 1 39.7 ? C6 AMP 501 A 1 HETATM 19 N N6 AMP . . . B 2 27.507 27.963 65.834 1 39.22 ? N6 AMP 501 A 1 HETATM 20 N N1 AMP . . . B 2 25.41 28.991 65.446 1 45.13 ? N1 AMP 501 A 1 HETATM 21 C C2 AMP . . . B 2 24.573 29.749 64.684 1 51.82 ? C2 AMP 501 A 1 HETATM 22 N N3 AMP . . . B 2 24.972 30.321 63.503 1 55.63 ? N3 AMP 501 A 1 HETATM 23 C C4 AMP . . . B 2 26.246 30.138 63.04 1 49.87 ? C4 AMP 501 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 23 #