data_5U8A # _model_server_result.job_id pixOqLmxgZZPyKkcnwAkvA _model_server_result.datetime_utc '2025-02-05 10:40:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u8a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5U8A # _exptl.entry_id 5U8A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.356 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3R,4S)-1-[(2-bromo-6-fluorophenyl)methyl]-N,N-dimethyl-4-(1-methyl-1H-indol-3-yl)pyrrolidin-3-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5U8A _cell.length_a 57.768 _cell.length_b 85.142 _cell.length_c 91.443 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U8A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H25 Br F N3' _chem_comp.formula_weight 430.356 _chem_comp.id 82D _chem_comp.mon_nstd_flag . _chem_comp.name (3R,4S)-1-[(2-bromo-6-fluorophenyl)methyl]-N,N-dimethyl-4-(1-methyl-1H-indol-3-yl)pyrrolidin-3-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F23 C22 82D sing 1 n n C21 C22 82D doub 2 n y C21 C20 82D sing 3 n y C22 C16 82D sing 4 n y C20 C19 82D doub 5 n y C28 N27 82D sing 6 n n C16 C15 82D sing 7 n n C16 C17 82D doub 8 n y C15 N14 82D sing 9 n n C24 N14 82D sing 10 n n C24 C25 82D sing 11 n n N27 C25 82D sing 12 n n N27 C29 82D sing 13 n n C19 C17 82D sing 14 n y C17 BR 82D sing 15 n n N14 C13 82D sing 16 n n C25 C11 82D sing 17 n n C13 C11 82D sing 18 n n C11 C10 82D sing 19 n n C10 C9 82D doub 20 n y C10 C4 82D sing 21 n y C9 N2 82D sing 22 n y C5 C4 82D doub 23 n y C5 C6 82D sing 24 n y C4 C3 82D sing 25 n y N2 C3 82D sing 26 n y N2 C1 82D sing 27 n n C6 C7 82D doub 28 n y C3 C8 82D doub 29 n y C7 C8 82D sing 30 n y C5 H1 82D sing 31 n n C6 H2 82D sing 32 n n C7 H3 82D sing 33 n n C8 H4 82D sing 34 n n C13 H5 82D sing 35 n n C13 H6 82D sing 36 n n C15 H7 82D sing 37 n n C15 H8 82D sing 38 n n C20 H9 82D sing 39 n n C21 H10 82D sing 40 n n C24 H11 82D sing 41 n n C24 H12 82D sing 42 n n C28 H13 82D sing 43 n n C28 H14 82D sing 44 n n C28 H15 82D sing 45 n n C19 H16 82D sing 46 n n C9 H17 82D sing 47 n n C11 H18 82D sing 48 n n C25 H19 82D sing 49 n n C1 H20 82D sing 50 n n C1 H21 82D sing 51 n n C1 H22 82D sing 52 n n C29 H23 82D sing 53 n n C29 H24 82D sing 54 n n C29 H25 82D sing 55 n n # _atom_sites.entry_id 5U8A _atom_sites.fract_transf_matrix[1][1] 0.017311 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011745 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010936 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 82D A 1 501 1 82D LIG . C 3 HOH A 1 601 225 HOH HOH . C 3 HOH A 2 602 227 HOH HOH . C 3 HOH A 3 603 195 HOH HOH . C 3 HOH A 4 604 226 HOH HOH . C 3 HOH A 5 605 217 HOH HOH . C 3 HOH A 6 606 224 HOH HOH . C 3 HOH A 7 607 142 HOH HOH . C 3 HOH A 8 608 199 HOH HOH . C 3 HOH A 9 609 206 HOH HOH . C 3 HOH A 10 610 80 HOH HOH . C 3 HOH A 11 611 191 HOH HOH . C 3 HOH A 12 612 130 HOH HOH . C 3 HOH A 13 613 167 HOH HOH . C 3 HOH A 14 614 86 HOH HOH . C 3 HOH A 15 615 175 HOH HOH . C 3 HOH A 16 616 138 HOH HOH . C 3 HOH A 17 617 136 HOH HOH . C 3 HOH A 18 618 213 HOH HOH . C 3 HOH A 19 619 71 HOH HOH . C 3 HOH A 20 620 107 HOH HOH . C 3 HOH A 21 621 40 HOH HOH . C 3 HOH A 22 622 186 HOH HOH . C 3 HOH A 23 623 1 HOH HOH . C 3 HOH A 24 624 197 HOH HOH . C 3 HOH A 25 625 20 HOH HOH . C 3 HOH A 26 626 108 HOH HOH . C 3 HOH A 27 627 52 HOH HOH . C 3 HOH A 28 628 140 HOH HOH . C 3 HOH A 29 629 156 HOH HOH . C 3 HOH A 30 630 211 HOH HOH . C 3 HOH A 31 631 111 HOH HOH . C 3 HOH A 32 632 172 HOH HOH . C 3 HOH A 33 633 58 HOH HOH . C 3 HOH A 34 634 102 HOH HOH . C 3 HOH A 35 635 34 HOH HOH . C 3 HOH A 36 636 10 HOH HOH . C 3 HOH A 37 637 90 HOH HOH . C 3 HOH A 38 638 105 HOH HOH . C 3 HOH A 39 639 99 HOH HOH . C 3 HOH A 40 640 75 HOH HOH . C 3 HOH A 41 641 163 HOH HOH . C 3 HOH A 42 642 184 HOH HOH . C 3 HOH A 43 643 44 HOH HOH . C 3 HOH A 44 644 14 HOH HOH . C 3 HOH A 45 645 7 HOH HOH . C 3 HOH A 46 646 214 HOH HOH . C 3 HOH A 47 647 222 HOH HOH . C 3 HOH A 48 648 196 HOH HOH . C 3 HOH A 49 649 116 HOH HOH . C 3 HOH A 50 650 53 HOH HOH . C 3 HOH A 51 651 6 HOH HOH . C 3 HOH A 52 652 164 HOH HOH . C 3 HOH A 53 653 113 HOH HOH . C 3 HOH A 54 654 35 HOH HOH . C 3 HOH A 55 655 19 HOH HOH . C 3 HOH A 56 656 4 HOH HOH . C 3 HOH A 57 657 134 HOH HOH . C 3 HOH A 58 658 169 HOH HOH . C 3 HOH A 59 659 27 HOH HOH . C 3 HOH A 60 660 219 HOH HOH . C 3 HOH A 61 661 46 HOH HOH . C 3 HOH A 62 662 94 HOH HOH . C 3 HOH A 63 663 29 HOH HOH . C 3 HOH A 64 664 141 HOH HOH . C 3 HOH A 65 665 91 HOH HOH . C 3 HOH A 66 666 11 HOH HOH . C 3 HOH A 67 667 39 HOH HOH . C 3 HOH A 68 668 16 HOH HOH . C 3 HOH A 69 669 70 HOH HOH . C 3 HOH A 70 670 13 HOH HOH . C 3 HOH A 71 671 81 HOH HOH . C 3 HOH A 72 672 181 HOH HOH . C 3 HOH A 73 673 42 HOH HOH . C 3 HOH A 74 674 209 HOH HOH . C 3 HOH A 75 675 54 HOH HOH . C 3 HOH A 76 676 32 HOH HOH . C 3 HOH A 77 677 162 HOH HOH . C 3 HOH A 78 678 109 HOH HOH . C 3 HOH A 79 679 57 HOH HOH . C 3 HOH A 80 680 65 HOH HOH . C 3 HOH A 81 681 26 HOH HOH . C 3 HOH A 82 682 118 HOH HOH . C 3 HOH A 83 683 100 HOH HOH . C 3 HOH A 84 684 201 HOH HOH . C 3 HOH A 85 685 161 HOH HOH . C 3 HOH A 86 686 114 HOH HOH . C 3 HOH A 87 687 15 HOH HOH . C 3 HOH A 88 688 64 HOH HOH . C 3 HOH A 89 689 127 HOH HOH . C 3 HOH A 90 690 171 HOH HOH . C 3 HOH A 91 691 17 HOH HOH . C 3 HOH A 92 692 185 HOH HOH . C 3 HOH A 93 693 122 HOH HOH . C 3 HOH A 94 694 158 HOH HOH . C 3 HOH A 95 695 85 HOH HOH . C 3 HOH A 96 696 33 HOH HOH . C 3 HOH A 97 697 2 HOH HOH . C 3 HOH A 98 698 56 HOH HOH . C 3 HOH A 99 699 103 HOH HOH . C 3 HOH A 100 700 79 HOH HOH . C 3 HOH A 101 701 159 HOH HOH . C 3 HOH A 102 702 223 HOH HOH . C 3 HOH A 103 703 3 HOH HOH . C 3 HOH A 104 704 147 HOH HOH . C 3 HOH A 105 705 55 HOH HOH . C 3 HOH A 106 706 157 HOH HOH . C 3 HOH A 107 707 155 HOH HOH . C 3 HOH A 108 708 74 HOH HOH . C 3 HOH A 109 709 189 HOH HOH . C 3 HOH A 110 710 131 HOH HOH . C 3 HOH A 111 711 180 HOH HOH . C 3 HOH A 112 712 96 HOH HOH . C 3 HOH A 113 713 190 HOH HOH . C 3 HOH A 114 714 45 HOH HOH . C 3 HOH A 115 715 160 HOH HOH . C 3 HOH A 116 716 76 HOH HOH . C 3 HOH A 117 717 154 HOH HOH . C 3 HOH A 118 718 126 HOH HOH . C 3 HOH A 119 719 123 HOH HOH . C 3 HOH A 120 720 88 HOH HOH . C 3 HOH A 121 721 21 HOH HOH . C 3 HOH A 122 722 63 HOH HOH . C 3 HOH A 123 723 193 HOH HOH . C 3 HOH A 124 724 110 HOH HOH . C 3 HOH A 125 725 152 HOH HOH . C 3 HOH A 126 726 194 HOH HOH . C 3 HOH A 127 727 124 HOH HOH . C 3 HOH A 128 728 187 HOH HOH . C 3 HOH A 129 729 51 HOH HOH . C 3 HOH A 130 730 49 HOH HOH . C 3 HOH A 131 731 218 HOH HOH . C 3 HOH A 132 732 106 HOH HOH . C 3 HOH A 133 733 82 HOH HOH . C 3 HOH A 134 734 22 HOH HOH . C 3 HOH A 135 735 83 HOH HOH . C 3 HOH A 136 736 93 HOH HOH . C 3 HOH A 137 737 183 HOH HOH . C 3 HOH A 138 738 12 HOH HOH . C 3 HOH A 139 739 128 HOH HOH . C 3 HOH A 140 740 87 HOH HOH . C 3 HOH A 141 741 135 HOH HOH . C 3 HOH A 142 742 132 HOH HOH . C 3 HOH A 143 743 89 HOH HOH . C 3 HOH A 144 744 144 HOH HOH . C 3 HOH A 145 745 31 HOH HOH . C 3 HOH A 146 746 119 HOH HOH . C 3 HOH A 147 747 170 HOH HOH . C 3 HOH A 148 748 151 HOH HOH . C 3 HOH A 149 749 215 HOH HOH . C 3 HOH A 150 750 188 HOH HOH . C 3 HOH A 151 751 139 HOH HOH . C 3 HOH A 152 752 174 HOH HOH . C 3 HOH A 153 753 95 HOH HOH . C 3 HOH A 154 754 62 HOH HOH . C 3 HOH A 155 755 37 HOH HOH . C 3 HOH A 156 756 9 HOH HOH . C 3 HOH A 157 757 25 HOH HOH . C 3 HOH A 158 758 8 HOH HOH . C 3 HOH A 159 759 121 HOH HOH . C 3 HOH A 160 760 47 HOH HOH . C 3 HOH A 161 761 104 HOH HOH . C 3 HOH A 162 762 18 HOH HOH . C 3 HOH A 163 763 59 HOH HOH . C 3 HOH A 164 764 36 HOH HOH . C 3 HOH A 165 765 129 HOH HOH . C 3 HOH A 166 766 92 HOH HOH . C 3 HOH A 167 767 41 HOH HOH . C 3 HOH A 168 768 150 HOH HOH . C 3 HOH A 169 769 48 HOH HOH . C 3 HOH A 170 770 125 HOH HOH . C 3 HOH A 171 771 61 HOH HOH . C 3 HOH A 172 772 212 HOH HOH . C 3 HOH A 173 773 50 HOH HOH . C 3 HOH A 174 774 24 HOH HOH . C 3 HOH A 175 775 117 HOH HOH . C 3 HOH A 176 776 23 HOH HOH . C 3 HOH A 177 777 200 HOH HOH . C 3 HOH A 178 778 28 HOH HOH . C 3 HOH A 179 779 153 HOH HOH . C 3 HOH A 180 780 207 HOH HOH . C 3 HOH A 181 781 68 HOH HOH . C 3 HOH A 182 782 69 HOH HOH . C 3 HOH A 183 783 5 HOH HOH . C 3 HOH A 184 784 165 HOH HOH . C 3 HOH A 185 785 60 HOH HOH . C 3 HOH A 186 786 178 HOH HOH . C 3 HOH A 187 787 66 HOH HOH . C 3 HOH A 188 788 137 HOH HOH . C 3 HOH A 189 789 149 HOH HOH . C 3 HOH A 190 790 145 HOH HOH . C 3 HOH A 191 791 216 HOH HOH . C 3 HOH A 192 792 98 HOH HOH . C 3 HOH A 193 793 101 HOH HOH . C 3 HOH A 194 794 173 HOH HOH . C 3 HOH A 195 795 176 HOH HOH . C 3 HOH A 196 796 179 HOH HOH . C 3 HOH A 197 797 77 HOH HOH . C 3 HOH A 198 798 97 HOH HOH . C 3 HOH A 199 799 78 HOH HOH . C 3 HOH A 200 800 143 HOH HOH . C 3 HOH A 201 801 73 HOH HOH . C 3 HOH A 202 802 202 HOH HOH . C 3 HOH A 203 803 72 HOH HOH . C 3 HOH A 204 804 120 HOH HOH . C 3 HOH A 205 805 38 HOH HOH . C 3 HOH A 206 806 115 HOH HOH . C 3 HOH A 207 807 220 HOH HOH . C 3 HOH A 208 808 210 HOH HOH . C 3 HOH A 209 809 221 HOH HOH . C 3 HOH A 210 810 166 HOH HOH . C 3 HOH A 211 811 168 HOH HOH . C 3 HOH A 212 812 133 HOH HOH . C 3 HOH A 213 813 203 HOH HOH . C 3 HOH A 214 814 208 HOH HOH . C 3 HOH A 215 815 192 HOH HOH . C 3 HOH A 216 816 84 HOH HOH . C 3 HOH A 217 817 112 HOH HOH . C 3 HOH A 218 818 198 HOH HOH . C 3 HOH A 219 819 177 HOH HOH . C 3 HOH A 220 820 30 HOH HOH . C 3 HOH A 221 821 43 HOH HOH . C 3 HOH A 222 822 182 HOH HOH . C 3 HOH A 223 823 204 HOH HOH . C 3 HOH A 224 824 146 HOH HOH . C 3 HOH A 225 825 148 HOH HOH . C 3 HOH A 226 826 205 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 82D . . . B 2 -16.771 -24.362 25.72 1 17.67 ? C4 82D 501 A 1 HETATM 2 C C5 82D . . . B 2 -15.818 -25.363 25.663 1 17.71 ? C5 82D 501 A 1 HETATM 3 C C6 82D . . . B 2 -15.319 -25.859 26.849 1 19.24 ? C6 82D 501 A 1 HETATM 4 C C7 82D . . . B 2 -15.739 -25.377 28.07 1 18.91 ? C7 82D 501 A 1 HETATM 5 C C8 82D . . . B 2 -16.682 -24.375 28.154 1 20.23 ? C8 82D 501 A 1 HETATM 6 C C10 82D . . . B 2 -17.481 -23.654 24.715 1 17.27 ? C10 82D 501 A 1 HETATM 7 C C13 82D . . . B 2 -16.019 -23.421 22.701 1 15.12 ? C13 82D 501 A 1 HETATM 8 C C15 82D . . . B 2 -14.308 -24.46 21.345 1 14.56 ? C15 82D 501 A 1 HETATM 9 C C17 82D . . . B 2 -12.468 -26.002 22.176 1 14.76 ? C17 82D 501 A 1 HETATM 10 C C20 82D . . . B 2 -11.833 -27.975 21.023 1 12.58 ? C20 82D 501 A 1 HETATM 11 C C21 82D . . . B 2 -12.799 -27.705 20.083 1 13.05 ? C21 82D 501 A 1 HETATM 12 C C22 82D . . . B 2 -13.578 -26.57 20.195 1 13.85 ? C22 82D 501 A 1 HETATM 13 C C24 82D . . . B 2 -16.512 -25.373 21.639 1 13.76 ? C24 82D 501 A 1 HETATM 14 C C28 82D . . . B 2 -19.137 -26.578 21.208 1 16.63 ? C28 82D 501 A 1 HETATM 15 C C19 82D . . . B 2 -11.663 -27.111 22.083 1 12.58 ? C19 82D 501 A 1 HETATM 16 C C9 82D . . . B 2 -18.298 -22.764 25.387 1 18.71 ? C9 82D 501 A 1 HETATM 17 C C16 82D . . . B 2 -13.438 -25.682 21.244 1 13.98 ? C16 82D 501 A 1 HETATM 18 C C3 82D . . . B 2 -17.181 -23.896 26.963 1 18.64 ? C3 82D 501 A 1 HETATM 19 C C11 82D . . . B 2 -17.397 -23.79 23.229 1 15.21 ? C11 82D 501 A 1 HETATM 20 C C25 82D . . . B 2 -17.607 -25.208 22.663 1 14.66 ? C25 82D 501 A 1 HETATM 21 C C1 82D . . . B 2 -18.802 -22.151 27.74 1 19.68 ? C1 82D 501 A 1 HETATM 22 C C29 82D . . . B 2 -19.987 -25.312 23.136 1 17.18 ? C29 82D 501 A 1 HETATM 23 N N2 82D . . . B 2 -18.105 -22.921 26.726 1 19.12 ? N2 82D 501 A 1 HETATM 24 N N14 82D . . . B 2 -15.418 -24.668 22.265 1 14.42 ? N14 82D 501 A 1 HETATM 25 N N27 82D . . . B 2 -18.96 -25.359 22.042 1 16.06 ? N27 82D 501 A 1 HETATM 26 F F23 82D . . . B 2 -14.516 -26.359 19.261 1 15.33 ? F23 82D 501 A 1 HETATM 27 BR BR 82D . . . B 2 -12.139 -24.932 23.677 1 26.75 ? BR 82D 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 435 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #