data_5U8T # _model_server_result.job_id -3zgi1ST6iXDTqaEcdHvHQ _model_server_result.datetime_utc '2025-01-18 07:07:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u8t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":801}' # _entry.id 5U8T # _exptl.entry_id 5U8T _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5U8T _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U8T _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 M N N ? 13 N N N ? 13 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 186 5 CYS 186 1_555 D SG CYS 211 5 CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 F SG CYS 474 7 CYS 474 1_555 F SG CYS 522 7 CYS 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 5U8T _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 13 ANP 2 1 901 1 ANP ANP . N 13 ANP 3 1 1001 3 ANP ANP . O 13 ANP 5 1 801 2 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . O 13 160.769 196.753 181.056 1 91.64 ? PG ANP 801 5 1 HETATM 2 O O1G ANP . . . O 13 159.532 195.996 180.687 1 106.7 ? O1G ANP 801 5 1 HETATM 3 O O2G ANP . . . O 13 161.857 195.738 181.568 1 107.54 ? O2G ANP 801 5 1 HETATM 4 O O3G ANP . . . O 13 160.455 197.809 182.191 1 109.04 ? O3G ANP 801 5 1 HETATM 5 P PB ANP . . . O 13 162.424 198.781 180.195 1 129.39 ? PB ANP 801 5 1 HETATM 6 O O1B ANP . . . O 13 163.91 198.5 179.823 1 108.07 ? O1B ANP 801 5 1 HETATM 7 O O2B ANP . . . O 13 162.315 198.983 181.674 1 128.12 ? O2B ANP 801 5 1 HETATM 8 N N3B ANP . . . O 13 161.397 197.55 179.709 1 105.49 ? N3B ANP 801 5 1 HETATM 9 P PA ANP . . . O 13 162.96 201.337 179.642 1 160.07 ? PA ANP 801 5 1 HETATM 10 O O1A ANP . . . O 13 162.002 202.517 179.487 1 154.5 ? O1A ANP 801 5 1 HETATM 11 O O2A ANP . . . O 13 163.625 201.29 180.972 1 217 -1 O2A ANP 801 5 1 HETATM 12 O O3A ANP . . . O 13 162.022 200.076 179.442 1 139.14 ? O3A ANP 801 5 1 HETATM 13 O O5' ANP . . . O 13 164.077 201.304 178.491 1 132.75 ? O5' ANP 801 5 1 HETATM 14 C C5' ANP . . . O 13 164.79 202.507 178.101 1 131.92 ? C5' ANP 801 5 1 HETATM 15 C C4' ANP . . . O 13 164.007 203.221 177.038 1 111.91 ? C4' ANP 801 5 1 HETATM 16 O O4' ANP . . . O 13 164.416 204.605 176.992 1 108.83 ? O4' ANP 801 5 1 HETATM 17 C C3' ANP . . . O 13 164.149 202.656 175.624 1 95.32 ? C3' ANP 801 5 1 HETATM 18 O O3' ANP . . . O 13 162.871 202.369 175.078 1 98.06 ? O3' ANP 801 5 1 HETATM 19 C C2' ANP . . . O 13 164.878 203.755 174.827 1 92 ? C2' ANP 801 5 1 HETATM 20 O O2' ANP . . . O 13 164.025 204.31 173.829 1 96.52 ? O2' ANP 801 5 1 HETATM 21 C C1' ANP . . . O 13 165.224 204.821 175.86 1 112.81 ? C1' ANP 801 5 1 HETATM 22 N N9 ANP . . . O 13 166.625 204.864 176.261 1 103.85 ? N9 ANP 801 5 1 HETATM 23 C C8 ANP . . . O 13 167.711 204.731 175.437 1 103.52 ? C8 ANP 801 5 1 HETATM 24 N N7 ANP . . . O 13 168.88 204.831 176.039 1 103.82 ? N7 ANP 801 5 1 HETATM 25 C C5 ANP . . . O 13 168.523 205.063 177.366 1 106.22 ? C5 ANP 801 5 1 HETATM 26 C C6 ANP . . . O 13 169.308 205.262 178.526 1 108.66 ? C6 ANP 801 5 1 HETATM 27 N N6 ANP . . . O 13 170.64 205.265 178.533 1 109.66 ? N6 ANP 801 5 1 HETATM 28 N N1 ANP . . . O 13 168.649 205.467 179.691 1 111.34 ? N1 ANP 801 5 1 HETATM 29 C C2 ANP . . . O 13 167.316 205.468 179.687 1 103.4 ? C2 ANP 801 5 1 HETATM 30 N N3 ANP . . . O 13 166.482 205.293 178.66 1 99.59 ? N3 ANP 801 5 1 HETATM 31 C C4 ANP . . . O 13 167.158 205.092 177.519 1 102.01 ? C4 ANP 801 5 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 31 #