data_5U93
#
_model_server_result.job_id            IFv2ZbEfJ5XlkpvzEmF3uQ 
_model_server_result.datetime_utc      '2024-11-27 00:57:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5u93 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    5U93 
#
_exptl.entry_id    5U93 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.693 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NICKEL (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5U93 
_cell.length_a            100.793 
_cell.length_b            100.793 
_cell.length_c            95.696 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5U93 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 120 A SER 120 1_555 A N MSE 121 A MSE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 A C MSE 121 A MSE 121 1_555 A N GLY 122 A GLY 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 A C GLY 122 A GLY 122 1_555 A N MSE 123 A MSE 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale4 A C MSE 123 A MSE 123 1_555 A N ALA 124 A ALA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale5 A C GLU 146 A GLU 146 1_555 A N MSE 147 A MSE 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale6 A C MSE 147 A MSE 147 1_555 A N ALA 148 A ALA 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale7 A C VAL 156 A VAL 156 1_555 A N MSE 157 A MSE 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale8 A C MSE 157 A MSE 157 1_555 A N LEU 158 A LEU 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale9 B C SER 120 B SER 120 1_555 B N MSE 121 B MSE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale10 B C MSE 121 B MSE 121 1_555 B N GLY 122 B GLY 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale11 B C GLY 122 B GLY 122 1_555 B N MSE 123 B MSE 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale12 B C MSE 123 B MSE 123 1_555 B N ALA 124 B ALA 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale13 B C GLU 146 B GLU 146 1_555 B N MSE 147 B MSE 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale14 B C MSE 147 B MSE 147 1_555 B N ALA 148 B ALA 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale15 B C VAL 156 B VAL 156 1_555 B N MSE 157 B MSE 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale16 B C MSE 157 B MSE 157 1_555 B N LEU 158 B LEU 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
metalc ? metalc1 A NE2 HIS 34 A HIS 34 1_555 C NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc2 A NE2 HIS 36 A HIS 36 1_555 C NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc3 A OE2 GLU 40 A GLU 40 1_555 C NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc4 A NE2 HIS 74 A HIS 74 1_555 C NI NI . A NI 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc5 C NI NI . A NI 501 1_555 D O3 RM4 . A RM4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc6 C NI NI . A NI 501 1_555 D O4 RM4 . A RM4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc7 B NE2 HIS 34 B HIS 34 1_555 E NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc8 B NE2 HIS 36 B HIS 36 1_555 E NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc9 B OE2 GLU 40 B GLU 40 1_555 E NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc10 B NE2 HIS 74 B HIS 74 1_555 E NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc11 E NI NI . B NI 201 1_555 F O3 RM4 . B RM4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc12 E NI NI . B NI 201 1_555 F O4 RM4 . B RM4 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
#
_chem_comp.formula           'Ni 2' 
_chem_comp.formula_weight    58.693 
_chem_comp.id                NI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NICKEL (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5U93 
_atom_sites.fract_transf_matrix[1][1]    0.009921 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009921 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01045 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NI A 1 501 501 NI NI . 
D 3 RM4 A 1 502 301 RM4 BRM . 
E 2 NI B 1 201 500 NI NI . 
F 3 RM4 B 1 202 300 RM4 BRM . 
G 4 HOH A 1 601 145 HOH HOH . 
G 4 HOH A 2 602 128 HOH HOH . 
G 4 HOH A 3 603 122 HOH HOH . 
G 4 HOH A 4 604 134 HOH HOH . 
G 4 HOH A 5 605 91 HOH HOH . 
G 4 HOH A 6 606 6 HOH HOH . 
G 4 HOH A 7 607 10 HOH HOH . 
G 4 HOH A 8 608 123 HOH HOH . 
G 4 HOH A 9 609 51 HOH HOH . 
G 4 HOH A 10 610 186 HOH HOH . 
G 4 HOH A 11 611 89 HOH HOH . 
G 4 HOH A 12 612 87 HOH HOH . 
G 4 HOH A 13 613 173 HOH HOH . 
G 4 HOH A 14 614 77 HOH HOH . 
G 4 HOH A 15 615 170 HOH HOH . 
G 4 HOH A 16 616 88 HOH HOH . 
G 4 HOH A 17 617 157 HOH HOH . 
G 4 HOH A 18 618 54 HOH HOH . 
G 4 HOH A 19 619 74 HOH HOH . 
G 4 HOH A 20 620 98 HOH HOH . 
G 4 HOH A 21 621 111 HOH HOH . 
G 4 HOH A 22 622 103 HOH HOH . 
G 4 HOH A 23 623 97 HOH HOH . 
G 4 HOH A 24 624 79 HOH HOH . 
G 4 HOH A 25 625 102 HOH HOH . 
G 4 HOH A 26 626 121 HOH HOH . 
G 4 HOH A 27 627 84 HOH HOH . 
G 4 HOH A 28 628 94 HOH HOH . 
G 4 HOH A 29 629 153 HOH HOH . 
G 4 HOH A 30 630 2 HOH HOH . 
G 4 HOH A 31 631 125 HOH HOH . 
G 4 HOH A 32 632 55 HOH HOH . 
G 4 HOH A 33 633 14 HOH HOH . 
G 4 HOH A 34 634 5 HOH HOH . 
G 4 HOH A 35 635 138 HOH HOH . 
G 4 HOH A 36 636 78 HOH HOH . 
G 4 HOH A 37 637 149 HOH HOH . 
G 4 HOH A 38 638 75 HOH HOH . 
G 4 HOH A 39 639 33 HOH HOH . 
G 4 HOH A 40 640 83 HOH HOH . 
G 4 HOH A 41 641 62 HOH HOH . 
G 4 HOH A 42 642 7 HOH HOH . 
G 4 HOH A 43 643 80 HOH HOH . 
G 4 HOH A 44 644 73 HOH HOH . 
G 4 HOH A 45 645 17 HOH HOH . 
G 4 HOH A 46 646 93 HOH HOH . 
G 4 HOH A 47 647 24 HOH HOH . 
G 4 HOH A 48 648 137 HOH HOH . 
G 4 HOH A 49 649 49 HOH HOH . 
G 4 HOH A 50 650 18 HOH HOH . 
G 4 HOH A 51 651 12 HOH HOH . 
G 4 HOH A 52 652 90 HOH HOH . 
G 4 HOH A 53 653 109 HOH HOH . 
G 4 HOH A 54 654 99 HOH HOH . 
G 4 HOH A 55 655 108 HOH HOH . 
G 4 HOH A 56 656 124 HOH HOH . 
G 4 HOH A 57 657 76 HOH HOH . 
G 4 HOH A 58 658 188 HOH HOH . 
G 4 HOH A 59 659 112 HOH HOH . 
G 4 HOH A 60 660 127 HOH HOH . 
G 4 HOH A 61 661 178 HOH HOH . 
G 4 HOH A 62 662 104 HOH HOH . 
G 4 HOH A 63 663 86 HOH HOH . 
G 4 HOH A 64 664 144 HOH HOH . 
G 4 HOH A 65 665 41 HOH HOH . 
G 4 HOH A 66 666 26 HOH HOH . 
G 4 HOH A 67 667 42 HOH HOH . 
G 4 HOH A 68 668 16 HOH HOH . 
G 4 HOH A 69 669 107 HOH HOH . 
G 4 HOH A 70 670 81 HOH HOH . 
G 4 HOH A 71 671 159 HOH HOH . 
G 4 HOH A 72 672 52 HOH HOH . 
G 4 HOH A 73 673 65 HOH HOH . 
G 4 HOH A 74 674 61 HOH HOH . 
G 4 HOH A 75 675 46 HOH HOH . 
G 4 HOH A 76 676 82 HOH HOH . 
G 4 HOH A 77 677 63 HOH HOH . 
G 4 HOH A 78 678 129 HOH HOH . 
G 4 HOH A 79 679 101 HOH HOH . 
G 4 HOH A 80 680 25 HOH HOH . 
G 4 HOH A 81 681 106 HOH HOH . 
G 4 HOH A 82 682 190 HOH HOH . 
G 4 HOH A 83 683 4 HOH HOH . 
G 4 HOH A 84 684 95 HOH HOH . 
G 4 HOH A 85 685 69 HOH HOH . 
G 4 HOH A 86 686 160 HOH HOH . 
G 4 HOH A 87 687 96 HOH HOH . 
G 4 HOH A 88 688 117 HOH HOH . 
G 4 HOH A 89 689 136 HOH HOH . 
G 4 HOH A 90 690 158 HOH HOH . 
G 4 HOH A 91 691 27 HOH HOH . 
G 4 HOH A 92 692 1 HOH HOH . 
G 4 HOH A 93 693 131 HOH HOH . 
G 4 HOH A 94 694 48 HOH HOH . 
G 4 HOH A 95 695 180 HOH HOH . 
G 4 HOH A 96 696 169 HOH HOH . 
G 4 HOH A 97 697 154 HOH HOH . 
G 4 HOH A 98 698 113 HOH HOH . 
G 4 HOH A 99 699 181 HOH HOH . 
G 4 HOH A 100 700 67 HOH HOH . 
G 4 HOH A 101 701 146 HOH HOH . 
G 4 HOH A 102 702 19 HOH HOH . 
G 4 HOH A 103 703 11 HOH HOH . 
G 4 HOH A 104 704 162 HOH HOH . 
G 4 HOH A 105 705 140 HOH HOH . 
G 4 HOH A 106 706 66 HOH HOH . 
G 4 HOH A 107 707 148 HOH HOH . 
G 4 HOH A 108 708 135 HOH HOH . 
G 4 HOH A 109 709 68 HOH HOH . 
G 4 HOH A 110 710 155 HOH HOH . 
G 4 HOH A 111 711 53 HOH HOH . 
G 4 HOH A 112 712 72 HOH HOH . 
G 4 HOH A 113 713 164 HOH HOH . 
G 4 HOH A 114 714 47 HOH HOH . 
G 4 HOH A 115 715 172 HOH HOH . 
G 4 HOH A 116 716 171 HOH HOH . 
G 4 HOH A 117 717 168 HOH HOH . 
G 4 HOH A 118 718 161 HOH HOH . 
G 4 HOH A 119 719 165 HOH HOH . 
H 4 HOH B 1 301 59 HOH HOH . 
H 4 HOH B 2 302 28 HOH HOH . 
H 4 HOH B 3 303 40 HOH HOH . 
H 4 HOH B 4 304 133 HOH HOH . 
H 4 HOH B 5 305 167 HOH HOH . 
H 4 HOH B 6 306 58 HOH HOH . 
H 4 HOH B 7 307 132 HOH HOH . 
H 4 HOH B 8 308 21 HOH HOH . 
H 4 HOH B 9 309 182 HOH HOH . 
H 4 HOH B 10 310 37 HOH HOH . 
H 4 HOH B 11 311 23 HOH HOH . 
H 4 HOH B 12 312 92 HOH HOH . 
H 4 HOH B 13 313 31 HOH HOH . 
H 4 HOH B 14 314 64 HOH HOH . 
H 4 HOH B 15 315 29 HOH HOH . 
H 4 HOH B 16 316 116 HOH HOH . 
H 4 HOH B 17 317 38 HOH HOH . 
H 4 HOH B 18 318 177 HOH HOH . 
H 4 HOH B 19 319 105 HOH HOH . 
H 4 HOH B 20 320 126 HOH HOH . 
H 4 HOH B 21 321 39 HOH HOH . 
H 4 HOH B 22 322 142 HOH HOH . 
H 4 HOH B 23 323 114 HOH HOH . 
H 4 HOH B 24 324 166 HOH HOH . 
H 4 HOH B 25 325 56 HOH HOH . 
H 4 HOH B 26 326 3 HOH HOH . 
H 4 HOH B 27 327 30 HOH HOH . 
H 4 HOH B 28 328 32 HOH HOH . 
H 4 HOH B 29 329 85 HOH HOH . 
H 4 HOH B 30 330 13 HOH HOH . 
H 4 HOH B 31 331 57 HOH HOH . 
H 4 HOH B 32 332 183 HOH HOH . 
H 4 HOH B 33 333 44 HOH HOH . 
H 4 HOH B 34 334 8 HOH HOH . 
H 4 HOH B 35 335 45 HOH HOH . 
H 4 HOH B 36 336 71 HOH HOH . 
H 4 HOH B 37 337 20 HOH HOH . 
H 4 HOH B 38 338 9 HOH HOH . 
H 4 HOH B 39 339 189 HOH HOH . 
H 4 HOH B 40 340 60 HOH HOH . 
H 4 HOH B 41 341 130 HOH HOH . 
H 4 HOH B 42 342 22 HOH HOH . 
H 4 HOH B 43 343 139 HOH HOH . 
H 4 HOH B 44 344 35 HOH HOH . 
H 4 HOH B 45 345 15 HOH HOH . 
H 4 HOH B 46 346 118 HOH HOH . 
H 4 HOH B 47 347 191 HOH HOH . 
H 4 HOH B 48 348 187 HOH HOH . 
H 4 HOH B 49 349 179 HOH HOH . 
H 4 HOH B 50 350 43 HOH HOH . 
H 4 HOH B 51 351 100 HOH HOH . 
H 4 HOH B 52 352 141 HOH HOH . 
H 4 HOH B 53 353 185 HOH HOH . 
H 4 HOH B 54 354 184 HOH HOH . 
H 4 HOH B 55 355 156 HOH HOH . 
H 4 HOH B 56 356 70 HOH HOH . 
H 4 HOH B 57 357 50 HOH HOH . 
H 4 HOH B 58 358 36 HOH HOH . 
H 4 HOH B 59 359 152 HOH HOH . 
H 4 HOH B 60 360 34 HOH HOH . 
H 4 HOH B 61 361 163 HOH HOH . 
H 4 HOH B 62 362 115 HOH HOH . 
H 4 HOH B 63 363 150 HOH HOH . 
H 4 HOH B 64 364 147 HOH HOH . 
H 4 HOH B 65 365 119 HOH HOH . 
H 4 HOH B 66 366 110 HOH HOH . 
H 4 HOH B 67 367 120 HOH HOH . 
H 4 HOH B 68 368 143 HOH HOH . 
H 4 HOH B 69 369 192 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NI 
_atom_site.label_atom_id         NI 
_atom_site.label_comp_id         NI 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               10.953 
_atom_site.Cartn_y               73.592 
_atom_site.Cartn_z               43.466 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        31.8 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NI 
_atom_site.auth_comp_id          NI 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           500 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           1 
#