data_5U99 # _model_server_result.job_id zJU38ZZbh7wcJhe-yUAElw _model_server_result.datetime_utc '2024-12-21 17:23:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u99 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5U99 # _exptl.entry_id 5U99 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5U99 _cell.length_a 134.758 _cell.length_b 134.758 _cell.length_c 111.005 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U99 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_554 y,x,-z-1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 -111.005 5 'crystal symmetry operation' 5_554 x-y,-y,-z-1 1 0 0 0 -1 0 0 0 -1 0 0 -111.005 6 'crystal symmetry operation' 6_554 -x,-x+y,-z-1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -111.005 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E MG MG . A MG 304 1_555 G O3G ATP . A ATP 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc2 E MG MG . A MG 304 1_555 G O1B ATP . A ATP 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc3 E MG MG . A MG 304 1_555 G O1A ATP . A ATP 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc4 E MG MG . A MG 304 1_555 H O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc5 E MG MG . A MG 304 1_555 H O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc6 E MG MG . A MG 304 1_555 H O HOH . A HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc7 F MG MG . A MG 305 1_555 G O1G ATP . A ATP 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc8 F MG MG . A MG 305 1_555 G O1G ATP . A ATP 306 5_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc9 F MG MG . A MG 305 1_555 H O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.726 ? metalc ? metalc10 F MG MG . A MG 305 1_555 H O HOH . A HOH 403 5_554 ? ? ? ? ? ? ? ? ? ? ? ? 1.705 ? metalc ? metalc11 F MG MG . A MG 305 1_555 H O HOH . A HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc12 F MG MG . A MG 305 1_555 H O HOH . A HOH 425 5_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 339 n n S O2 SO4 doub 340 n n S O3 SO4 sing 341 n n S O4 SO4 sing 342 n n # _atom_sites.entry_id 5U99 _atom_sites.fract_transf_matrix[1][1] 0.007421 _atom_sites.fract_transf_matrix[1][2] 0.004284 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008569 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 1 SO4 SO4 . C 2 SO4 A 1 302 2 SO4 SO4 . D 2 SO4 A 1 303 3 SO4 SO4 . E 3 MG A 1 304 1 MG MG . F 3 MG A 1 305 2 MG MG . G 4 ATP A 1 306 1 ATP ATP . H 5 HOH A 1 401 16 HOH HOH . H 5 HOH A 2 402 14 HOH HOH . H 5 HOH A 3 403 7 HOH HOH . H 5 HOH A 4 404 1 HOH HOH . H 5 HOH A 5 405 19 HOH HOH . H 5 HOH A 6 406 27 HOH HOH . H 5 HOH A 7 407 20 HOH HOH . H 5 HOH A 8 408 23 HOH HOH . H 5 HOH A 9 409 29 HOH HOH . H 5 HOH A 10 410 15 HOH HOH . H 5 HOH A 11 411 6 HOH HOH . H 5 HOH A 12 412 4 HOH HOH . H 5 HOH A 13 413 2 HOH HOH . H 5 HOH A 14 414 17 HOH HOH . H 5 HOH A 15 415 10 HOH HOH . H 5 HOH A 16 416 21 HOH HOH . H 5 HOH A 17 417 3 HOH HOH . H 5 HOH A 18 418 5 HOH HOH . H 5 HOH A 19 419 18 HOH HOH . H 5 HOH A 20 420 26 HOH HOH . H 5 HOH A 21 421 9 HOH HOH . H 5 HOH A 22 422 25 HOH HOH . H 5 HOH A 23 423 22 HOH HOH . H 5 HOH A 24 424 12 HOH HOH . H 5 HOH A 25 425 8 HOH HOH . H 5 HOH A 26 426 24 HOH HOH . H 5 HOH A 27 427 28 HOH HOH . H 5 HOH A 28 428 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . B 2 -18.68 14.242 -49.881 1 53.03 ? S SO4 301 A 1 HETATM 2 O O1 SO4 . . . B 2 -17.968 15.117 -50.835 1 53.5 ? O1 SO4 301 A 1 HETATM 3 O O2 SO4 . . . B 2 -19.388 13.202 -50.657 1 54.47 ? O2 SO4 301 A 1 HETATM 4 O O3 SO4 . . . B 2 -19.663 15.036 -49.101 1 53.58 ? O3 SO4 301 A 1 HETATM 5 O O4 SO4 . . . B 2 -17.712 13.611 -48.947 1 49.61 ? O4 SO4 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #