data_5U99 # _model_server_result.job_id PB_i-ZYT0kduG1-KOPhwqQ _model_server_result.datetime_utc '2024-11-02 09:04:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u99 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 5U99 # _exptl.entry_id 5U99 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5U99 _cell.length_a 134.758 _cell.length_b 134.758 _cell.length_c 111.005 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U99 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_554 y,x,-z-1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 -111.005 5 'crystal symmetry operation' 5_554 x-y,-y,-z-1 1 0 0 0 -1 0 0 0 -1 0 0 -111.005 6 'crystal symmetry operation' 6_554 -x,-x+y,-z-1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -111.005 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E MG MG . A MG 304 1_555 G O3G ATP . A ATP 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc2 E MG MG . A MG 304 1_555 G O1B ATP . A ATP 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc3 E MG MG . A MG 304 1_555 G O1A ATP . A ATP 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc4 E MG MG . A MG 304 1_555 H O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? metalc ? metalc5 E MG MG . A MG 304 1_555 H O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc6 E MG MG . A MG 304 1_555 H O HOH . A HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc7 F MG MG . A MG 305 1_555 G O1G ATP . A ATP 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc8 F MG MG . A MG 305 1_555 G O1G ATP . A ATP 306 5_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc9 F MG MG . A MG 305 1_555 H O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.726 ? metalc ? metalc10 F MG MG . A MG 305 1_555 H O HOH . A HOH 403 5_554 ? ? ? ? ? ? ? ? ? ? ? ? 1.705 ? metalc ? metalc11 F MG MG . A MG 305 1_555 H O HOH . A HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc12 F MG MG . A MG 305 1_555 H O HOH . A HOH 425 5_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5U99 _atom_sites.fract_transf_matrix[1][1] 0.007421 _atom_sites.fract_transf_matrix[1][2] 0.004284 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008569 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 1 SO4 SO4 . C 2 SO4 A 1 302 2 SO4 SO4 . D 2 SO4 A 1 303 3 SO4 SO4 . E 3 MG A 1 304 1 MG MG . F 3 MG A 1 305 2 MG MG . G 4 ATP A 1 306 1 ATP ATP . H 5 HOH A 1 401 16 HOH HOH . H 5 HOH A 2 402 14 HOH HOH . H 5 HOH A 3 403 7 HOH HOH . H 5 HOH A 4 404 1 HOH HOH . H 5 HOH A 5 405 19 HOH HOH . H 5 HOH A 6 406 27 HOH HOH . H 5 HOH A 7 407 20 HOH HOH . H 5 HOH A 8 408 23 HOH HOH . H 5 HOH A 9 409 29 HOH HOH . H 5 HOH A 10 410 15 HOH HOH . H 5 HOH A 11 411 6 HOH HOH . H 5 HOH A 12 412 4 HOH HOH . H 5 HOH A 13 413 2 HOH HOH . H 5 HOH A 14 414 17 HOH HOH . H 5 HOH A 15 415 10 HOH HOH . H 5 HOH A 16 416 21 HOH HOH . H 5 HOH A 17 417 3 HOH HOH . H 5 HOH A 18 418 5 HOH HOH . H 5 HOH A 19 419 18 HOH HOH . H 5 HOH A 20 420 26 HOH HOH . H 5 HOH A 21 421 9 HOH HOH . H 5 HOH A 22 422 25 HOH HOH . H 5 HOH A 23 423 22 HOH HOH . H 5 HOH A 24 424 12 HOH HOH . H 5 HOH A 25 425 8 HOH HOH . H 5 HOH A 26 426 24 HOH HOH . H 5 HOH A 27 427 28 HOH HOH . H 5 HOH A 28 428 13 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -26.452 _atom_site.Cartn_y -0.003 _atom_site.Cartn_z -55.492 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 66.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 305 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #