data_5U9E # _model_server_result.job_id miRuXSK0941CMHk4a_QjHg _model_server_result.datetime_utc '2024-11-18 20:24:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u9e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 5U9E # _exptl.entry_id 5U9E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description beta-L-rhamnopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5U9E _cell.length_a 100.618 _cell.length_b 100.618 _cell.length_c 95.204 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 32 A HIS 34 1_555 D NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc2 A NE2 HIS 34 A HIS 36 1_555 D NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc3 A OE2 GLU 38 A GLU 40 1_555 D NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc4 A NE2 HIS 72 A HIS 74 1_555 D NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc5 C O3 RM4 . A RM4 201 1_555 D NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc6 C O4 RM4 . A RM4 201 1_555 D NI NI . A NI 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc7 B NE2 HIS 32 B HIS 34 1_555 F NI NI . B NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc8 B NE2 HIS 34 B HIS 36 1_555 F NI NI . B NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc9 B OE2 GLU 38 B GLU 40 1_555 F NI NI . B NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc10 B NE2 HIS 72 B HIS 74 1_555 F NI NI . B NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc11 E O3 RM4 . B RM4 301 1_555 F NI NI . B NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc12 E O4 RM4 . B RM4 301 1_555 F NI NI . B NI 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? # _chem_comp.formula 'C6 H12 O5' _chem_comp.formula_weight 164.156 _chem_comp.id RM4 _chem_comp.mon_nstd_flag . _chem_comp.name beta-L-rhamnopyranose _chem_comp.type 'l-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-L-rhamnose;6-deoxy-beta-L-mannopyranose;L-rhamnose;rhamnose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 RM4 sing 277 n n C1 O5 RM4 sing 278 n n C1 O1 RM4 sing 279 n n C1 H1 RM4 sing 280 n n C3 C2 RM4 sing 281 n n C2 O2 RM4 sing 282 n n C2 H2 RM4 sing 283 n n O3 C3 RM4 sing 284 n n C3 C4 RM4 sing 285 n n C3 H3 RM4 sing 286 n n O4 C4 RM4 sing 287 n n C4 C5 RM4 sing 288 n n C4 H4 RM4 sing 289 n n C5 C6 RM4 sing 290 n n C5 O5 RM4 sing 291 n n C5 H5 RM4 sing 292 n n C6 H61 RM4 sing 293 n n C6 H62 RM4 sing 294 n n C6 H63 RM4 sing 295 n n O1 HO1 RM4 sing 296 n n O2 HO2 RM4 sing 297 n n O3 HO3 RM4 sing 298 n n O4 HO4 RM4 sing 299 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version RM4 LRhapb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 RM4 b-L-rhamnopyranose 'COMMON NAME' GMML 1 RM4 b-L-Rhap 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 RM4 Rha 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5U9E _atom_sites.fract_transf_matrix[1][1] 0.009939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010504 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RM4 A 1 201 300 RM4 BRM . D 3 NI A 1 202 500 NI NI . E 2 RM4 B 1 301 301 RM4 BRM . F 3 NI B 1 302 501 NI NI . G 4 HOH A 1 301 92 HOH HOH . G 4 HOH A 2 302 88 HOH HOH . G 4 HOH A 3 303 54 HOH HOH . G 4 HOH A 4 304 66 HOH HOH . G 4 HOH A 5 305 60 HOH HOH . G 4 HOH A 6 306 158 HOH HOH . G 4 HOH A 7 307 87 HOH HOH . G 4 HOH A 8 308 61 HOH HOH . G 4 HOH A 9 309 56 HOH HOH . G 4 HOH A 10 310 36 HOH HOH . G 4 HOH A 11 311 96 HOH HOH . G 4 HOH A 12 312 71 HOH HOH . G 4 HOH A 13 313 40 HOH HOH . G 4 HOH A 14 314 74 HOH HOH . G 4 HOH A 15 315 65 HOH HOH . G 4 HOH A 16 316 4 HOH HOH . G 4 HOH A 17 317 53 HOH HOH . G 4 HOH A 18 318 106 HOH HOH . G 4 HOH A 19 319 95 HOH HOH . G 4 HOH A 20 320 1 HOH HOH . G 4 HOH A 21 321 30 HOH HOH . G 4 HOH A 22 322 35 HOH HOH . G 4 HOH A 23 323 29 HOH HOH . G 4 HOH A 24 324 52 HOH HOH . G 4 HOH A 25 325 183 HOH HOH . G 4 HOH A 26 326 86 HOH HOH . G 4 HOH A 27 327 64 HOH HOH . G 4 HOH A 28 328 28 HOH HOH . G 4 HOH A 29 329 41 HOH HOH . G 4 HOH A 30 330 155 HOH HOH . G 4 HOH A 31 331 37 HOH HOH . G 4 HOH A 32 332 27 HOH HOH . G 4 HOH A 33 333 62 HOH HOH . G 4 HOH A 34 334 139 HOH HOH . G 4 HOH A 35 335 97 HOH HOH . G 4 HOH A 36 336 34 HOH HOH . G 4 HOH A 37 337 91 HOH HOH . G 4 HOH A 38 338 83 HOH HOH . G 4 HOH A 39 339 5 HOH HOH . G 4 HOH A 40 340 31 HOH HOH . G 4 HOH A 41 341 76 HOH HOH . G 4 HOH A 42 342 21 HOH HOH . G 4 HOH A 43 343 44 HOH HOH . G 4 HOH A 44 344 186 HOH HOH . G 4 HOH A 45 345 3 HOH HOH . G 4 HOH A 46 346 55 HOH HOH . G 4 HOH A 47 347 45 HOH HOH . G 4 HOH A 48 348 98 HOH HOH . G 4 HOH A 49 349 100 HOH HOH . G 4 HOH A 50 350 130 HOH HOH . G 4 HOH A 51 351 63 HOH HOH . G 4 HOH A 52 352 111 HOH HOH . G 4 HOH A 53 353 165 HOH HOH . G 4 HOH A 54 354 80 HOH HOH . G 4 HOH A 55 355 32 HOH HOH . G 4 HOH A 56 356 85 HOH HOH . G 4 HOH A 57 357 99 HOH HOH . G 4 HOH A 58 358 42 HOH HOH . G 4 HOH A 59 359 67 HOH HOH . G 4 HOH A 60 360 70 HOH HOH . G 4 HOH A 61 361 181 HOH HOH . G 4 HOH A 62 362 77 HOH HOH . G 4 HOH A 63 363 72 HOH HOH . G 4 HOH A 64 364 168 HOH HOH . G 4 HOH A 65 365 122 HOH HOH . G 4 HOH A 66 366 128 HOH HOH . G 4 HOH A 67 367 89 HOH HOH . G 4 HOH A 68 368 24 HOH HOH . G 4 HOH A 69 369 112 HOH HOH . G 4 HOH A 70 370 68 HOH HOH . G 4 HOH A 71 371 90 HOH HOH . G 4 HOH A 72 372 39 HOH HOH . G 4 HOH A 73 373 82 HOH HOH . G 4 HOH A 74 374 163 HOH HOH . G 4 HOH A 75 375 38 HOH HOH . G 4 HOH A 76 376 102 HOH HOH . G 4 HOH A 77 377 69 HOH HOH . G 4 HOH A 78 378 81 HOH HOH . G 4 HOH A 79 379 147 HOH HOH . G 4 HOH A 80 380 113 HOH HOH . G 4 HOH A 81 381 75 HOH HOH . G 4 HOH A 82 382 144 HOH HOH . G 4 HOH A 83 383 152 HOH HOH . G 4 HOH A 84 384 101 HOH HOH . G 4 HOH A 85 385 149 HOH HOH . G 4 HOH A 86 386 121 HOH HOH . G 4 HOH A 87 387 105 HOH HOH . G 4 HOH A 88 388 127 HOH HOH . G 4 HOH A 89 389 179 HOH HOH . G 4 HOH A 90 390 156 HOH HOH . G 4 HOH A 91 391 78 HOH HOH . G 4 HOH A 92 392 164 HOH HOH . G 4 HOH A 93 393 94 HOH HOH . G 4 HOH A 94 394 124 HOH HOH . G 4 HOH A 95 395 59 HOH HOH . G 4 HOH A 96 396 134 HOH HOH . G 4 HOH A 97 397 169 HOH HOH . G 4 HOH A 98 398 194 HOH HOH . G 4 HOH A 99 399 79 HOH HOH . G 4 HOH A 100 400 187 HOH HOH . G 4 HOH A 101 401 184 HOH HOH . G 4 HOH A 102 402 136 HOH HOH . G 4 HOH A 103 403 173 HOH HOH . G 4 HOH A 104 404 166 HOH HOH . G 4 HOH A 105 405 150 HOH HOH . G 4 HOH A 106 406 180 HOH HOH . H 4 HOH B 1 401 162 HOH HOH . H 4 HOH B 2 402 22 HOH HOH . H 4 HOH B 3 403 138 HOH HOH . H 4 HOH B 4 404 114 HOH HOH . H 4 HOH B 5 405 188 HOH HOH . H 4 HOH B 6 406 140 HOH HOH . H 4 HOH B 7 407 12 HOH HOH . H 4 HOH B 8 408 58 HOH HOH . H 4 HOH B 9 409 19 HOH HOH . H 4 HOH B 10 410 10 HOH HOH . H 4 HOH B 11 411 7 HOH HOH . H 4 HOH B 12 412 16 HOH HOH . H 4 HOH B 13 413 84 HOH HOH . H 4 HOH B 14 414 46 HOH HOH . H 4 HOH B 15 415 33 HOH HOH . H 4 HOH B 16 416 125 HOH HOH . H 4 HOH B 17 417 120 HOH HOH . H 4 HOH B 18 418 9 HOH HOH . H 4 HOH B 19 419 50 HOH HOH . H 4 HOH B 20 420 191 HOH HOH . H 4 HOH B 21 421 25 HOH HOH . H 4 HOH B 22 422 146 HOH HOH . H 4 HOH B 23 423 161 HOH HOH . H 4 HOH B 24 424 15 HOH HOH . H 4 HOH B 25 425 176 HOH HOH . H 4 HOH B 26 426 2 HOH HOH . H 4 HOH B 27 427 47 HOH HOH . H 4 HOH B 28 428 26 HOH HOH . H 4 HOH B 29 429 154 HOH HOH . H 4 HOH B 30 430 103 HOH HOH . H 4 HOH B 31 431 131 HOH HOH . H 4 HOH B 32 432 151 HOH HOH . H 4 HOH B 33 433 157 HOH HOH . H 4 HOH B 34 434 145 HOH HOH . H 4 HOH B 35 435 11 HOH HOH . H 4 HOH B 36 436 148 HOH HOH . H 4 HOH B 37 437 153 HOH HOH . H 4 HOH B 38 438 6 HOH HOH . H 4 HOH B 39 439 118 HOH HOH . H 4 HOH B 40 440 18 HOH HOH . H 4 HOH B 41 441 17 HOH HOH . H 4 HOH B 42 442 167 HOH HOH . H 4 HOH B 43 443 109 HOH HOH . H 4 HOH B 44 444 174 HOH HOH . H 4 HOH B 45 445 175 HOH HOH . H 4 HOH B 46 446 115 HOH HOH . H 4 HOH B 47 447 20 HOH HOH . H 4 HOH B 48 448 159 HOH HOH . H 4 HOH B 49 449 49 HOH HOH . H 4 HOH B 50 450 141 HOH HOH . H 4 HOH B 51 451 104 HOH HOH . H 4 HOH B 52 452 107 HOH HOH . H 4 HOH B 53 453 142 HOH HOH . H 4 HOH B 54 454 193 HOH HOH . H 4 HOH B 55 455 48 HOH HOH . H 4 HOH B 56 456 14 HOH HOH . H 4 HOH B 57 457 123 HOH HOH . H 4 HOH B 58 458 13 HOH HOH . H 4 HOH B 59 459 137 HOH HOH . H 4 HOH B 60 460 110 HOH HOH . H 4 HOH B 61 461 143 HOH HOH . H 4 HOH B 62 462 8 HOH HOH . H 4 HOH B 63 463 23 HOH HOH . H 4 HOH B 64 464 185 HOH HOH . H 4 HOH B 65 465 73 HOH HOH . H 4 HOH B 66 466 57 HOH HOH . H 4 HOH B 67 467 192 HOH HOH . H 4 HOH B 68 468 189 HOH HOH . H 4 HOH B 69 469 119 HOH HOH . H 4 HOH B 70 470 43 HOH HOH . H 4 HOH B 71 471 171 HOH HOH . H 4 HOH B 72 472 178 HOH HOH . H 4 HOH B 73 473 177 HOH HOH . H 4 HOH B 74 474 51 HOH HOH . H 4 HOH B 75 475 135 HOH HOH . H 4 HOH B 76 476 126 HOH HOH . H 4 HOH B 77 477 116 HOH HOH . H 4 HOH B 78 478 129 HOH HOH . H 4 HOH B 79 479 160 HOH HOH . H 4 HOH B 80 480 108 HOH HOH . H 4 HOH B 81 481 132 HOH HOH . H 4 HOH B 82 482 190 HOH HOH . H 4 HOH B 83 483 172 HOH HOH . H 4 HOH B 84 484 117 HOH HOH . H 4 HOH B 85 485 93 HOH HOH . H 4 HOH B 86 486 133 HOH HOH . H 4 HOH B 87 487 170 HOH HOH . H 4 HOH B 88 488 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RM4 . . . E 2 11.362 28.062 25.164 0.76 58.76 ? C1 RM4 301 B 1 HETATM 2 C C2 RM4 . . . E 2 12.449 27.632 24.218 0.76 55.52 ? C2 RM4 301 B 1 HETATM 3 C C3 RM4 . . . E 2 12.303 28.051 22.829 0.76 45.11 ? C3 RM4 301 B 1 HETATM 4 C C4 RM4 . . . E 2 11.471 29.224 22.653 0.76 43.63 ? C4 RM4 301 B 1 HETATM 5 C C5 RM4 . . . E 2 10.111 29.057 23.238 0.76 51.48 ? C5 RM4 301 B 1 HETATM 6 C C6 RM4 . . . E 2 9.456 30.365 23.28 0.76 56.38 ? C6 RM4 301 B 1 HETATM 7 O O1 RM4 . . . E 2 11.8 29.056 25.96 0.76 63.15 ? O1 RM4 301 B 1 HETATM 8 O O2 RM4 . . . E 2 13.681 28.114 24.703 0.76 64.92 ? O2 RM4 301 B 1 HETATM 9 O O3 RM4 . . . E 2 13.562 28.377 22.244 0.76 33.65 ? O3 RM4 301 B 1 HETATM 10 O O4 RM4 . . . E 2 11.364 29.402 21.27 0.76 33.61 ? O4 RM4 301 B 1 HETATM 11 O O5 RM4 . . . E 2 10.078 28.469 24.562 0.76 56.11 ? O5 RM4 301 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #