data_5U9I # _model_server_result.job_id h0CvP4KNUpJ0fTguxBbx2Q _model_server_result.datetime_utc '2024-11-30 11:05:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u9i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5U9I # _exptl.entry_id 5U9I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 206.367 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description FARNESYL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5U9I _cell.length_a 54.97 _cell.length_b 66.18 _cell.length_c 106.96 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U9I _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H26' _chem_comp.formula_weight 206.367 _chem_comp.id FAR _chem_comp.mon_nstd_flag . _chem_comp.name FARNESYL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FAR sing 83 n n C1 H11 FAR sing 84 n n C1 H12A FAR sing 85 n n C1 H13 FAR sing 86 n n C2 C3 FAR doub 87 e n C2 H2 FAR sing 88 n n C3 C5 FAR sing 89 n n C3 C4 FAR sing 90 n n C5 C6 FAR sing 91 n n C5 H51 FAR sing 92 n n C5 H52 FAR sing 93 n n C6 C7 FAR sing 94 n n C6 H61 FAR sing 95 n n C6 H62 FAR sing 96 n n C7 C8 FAR doub 97 e n C7 H7 FAR sing 98 n n C8 C9 FAR sing 99 n n C8 C10 FAR sing 100 n n C9 C11 FAR sing 101 n n C9 H91 FAR sing 102 n n C9 H92 FAR sing 103 n n C11 C12 FAR sing 104 n n C11 H111 FAR sing 105 n n C11 H112 FAR sing 106 n n C12 C13 FAR doub 107 n n C12 H12 FAR sing 108 n n C13 C14 FAR sing 109 n n C13 C15 FAR sing 110 n n C14 H141 FAR sing 111 n n C14 H142 FAR sing 112 n n C14 H143 FAR sing 113 n n C15 H151 FAR sing 114 n n C15 H152 FAR sing 115 n n C15 H153 FAR sing 116 n n C4 H41 FAR sing 117 n n C4 H42 FAR sing 118 n n C4 H43 FAR sing 119 n n C10 H101 FAR sing 120 n n C10 H102 FAR sing 121 n n C10 H103 FAR sing 122 n n # _atom_sites.entry_id 5U9I _atom_sites.fract_transf_matrix[1][1] 0.018192 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01511 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id FAR _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 201 _pdbx_nonpoly_scheme.auth_seq_num 302 _pdbx_nonpoly_scheme.pdb_mon_id FAR _pdbx_nonpoly_scheme.auth_mon_id FAR _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FAR . . . B 2 1.827 6.604 6.295 1 72.05 ? C1 FAR 201 A 1 HETATM 2 C C2 FAR . . . B 2 2.991 7.398 5.788 1 82.64 ? C2 FAR 201 A 1 HETATM 3 C C3 FAR . . . B 2 3.533 8.39 6.51 1 81.46 ? C3 FAR 201 A 1 HETATM 4 C C5 FAR . . . B 2 2.979 8.741 7.908 1 76.61 ? C5 FAR 201 A 1 HETATM 5 C C6 FAR . . . B 2 3.082 10.272 8.072 1 57.45 ? C6 FAR 201 A 1 HETATM 6 C C7 FAR . . . B 2 1.986 10.785 8.914 1 62.89 ? C7 FAR 201 A 1 HETATM 7 C C8 FAR . . . B 2 2.107 10.992 10.246 1 74.23 ? C8 FAR 201 A 1 HETATM 8 C C9 FAR . . . B 2 0.908 11.519 11.041 1 63.07 ? C9 FAR 201 A 1 HETATM 9 C C11 FAR . . . B 2 1.319 12.65 11.99 1 52.79 ? C11 FAR 201 A 1 HETATM 10 C C12 FAR . . . B 2 0.581 13.833 11.556 1 68.91 ? C12 FAR 201 A 1 HETATM 11 C C13 FAR . . . B 2 0.179 14.792 12.362 1 59.42 ? C13 FAR 201 A 1 HETATM 12 C C14 FAR . . . B 2 0.441 14.754 13.785 1 58.98 ? C14 FAR 201 A 1 HETATM 13 C C15 FAR . . . B 2 -0.558 15.988 11.821 1 59.78 ? C15 FAR 201 A 1 HETATM 14 C C4 FAR . . . B 2 4.711 9.171 5.999 1 72.65 ? C4 FAR 201 A 1 HETATM 15 C C10 FAR . . . B 2 3.349 10.654 11.045 1 72.53 ? C10 FAR 201 A 1 HETATM 16 H H11 FAR . . . B 2 1.062 7.18 6.45 1 86.51 ? H11 FAR 201 A 1 HETATM 17 H H12A FAR . . . B 2 2.01 6.121 7.116 1 86.51 ? H12A FAR 201 A 1 HETATM 18 H H13 FAR . . . B 2 1.564 5.953 5.626 1 86.51 ? H13 FAR 201 A 1 HETATM 19 H H2 FAR . . . B 2 3.321 7.175 4.948 1 99.22 ? H2 FAR 201 A 1 HETATM 20 H H51 FAR . . . B 2 2.073 8.427 8.055 1 91.99 ? H51 FAR 201 A 1 HETATM 21 H H52 FAR . . . B 2 3.501 8.299 8.596 1 91.99 ? H52 FAR 201 A 1 HETATM 22 H H61 FAR . . . B 2 3.056 10.67 7.188 1 68.99 ? H61 FAR 201 A 1 HETATM 23 H H62 FAR . . . B 2 3.939 10.571 8.414 1 68.99 ? H62 FAR 201 A 1 HETATM 24 H H7 FAR . . . B 2 1.206 10.996 8.454 1 75.52 ? H7 FAR 201 A 1 HETATM 25 H H91 FAR . . . B 2 0.45 10.813 11.523 1 75.74 ? H91 FAR 201 A 1 HETATM 26 H H92 FAR . . . B 2 0.237 11.851 10.424 1 75.74 ? H92 FAR 201 A 1 HETATM 27 H H111 FAR . . . B 2 1.096 12.393 12.898 1 63.4 ? H111 FAR 201 A 1 HETATM 28 H H112 FAR . . . B 2 2.275 12.811 12.035 1 63.4 ? H112 FAR 201 A 1 HETATM 29 H H12 FAR . . . B 2 0.414 13.876 10.642 1 82.75 ? H12 FAR 201 A 1 HETATM 30 H H141 FAR . . . B 2 0.081 15.517 14.263 1 70.83 ? H141 FAR 201 A 1 HETATM 31 H H142 FAR . . . B 2 1.396 14.717 13.951 1 70.83 ? H142 FAR 201 A 1 HETATM 32 H H143 FAR . . . B 2 0.052 13.956 14.176 1 70.83 ? H143 FAR 201 A 1 HETATM 33 H H151 FAR . . . B 2 -0.76 15.911 10.875 1 71.78 ? H151 FAR 201 A 1 HETATM 34 H H152 FAR . . . B 2 -1.412 16.095 12.268 1 71.78 ? H152 FAR 201 A 1 HETATM 35 H H153 FAR . . . B 2 -0.037 16.8 11.921 1 71.78 ? H153 FAR 201 A 1 HETATM 36 H H41 FAR . . . B 2 4.972 8.935 5.095 1 87.23 ? H41 FAR 201 A 1 HETATM 37 H H42 FAR . . . B 2 5.486 9.016 6.562 1 87.23 ? H42 FAR 201 A 1 HETATM 38 H H43 FAR . . . B 2 4.532 10.125 5.983 1 87.23 ? H43 FAR 201 A 1 HETATM 39 H H101 FAR . . . B 2 3.21 9.906 11.648 1 87.09 ? H101 FAR 201 A 1 HETATM 40 H H102 FAR . . . B 2 3.619 11.409 11.592 1 87.09 ? H102 FAR 201 A 1 HETATM 41 H H103 FAR . . . B 2 4.089 10.4 10.472 1 87.09 ? H103 FAR 201 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #