data_5U9J # _model_server_result.job_id 8lHShThWIcEQvlOal75tWw _model_server_result.datetime_utc '2024-11-07 19:03:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u9j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5U9J # _exptl.entry_id 5U9J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 274.484 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'GERAN-8-YL GERAN' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.09 _cell.angle_gamma 90 _cell.entry_id 5U9J _cell.length_a 69.34 _cell.length_b 51.17 _cell.length_c 106.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U9J _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 160 A GLU 152 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc2 E NA NA . A NA 303 1_555 B O ARG 54 B ARG 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc3 E NA NA . A NA 303 1_555 H O HOH . B HOH 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? # _chem_comp.formula 'C20 H34' _chem_comp.formula_weight 274.484 _chem_comp.id GER _chem_comp.mon_nstd_flag . _chem_comp.name 'GERAN-8-YL GERAN' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GER sing 83 n n C1 H11 GER sing 84 n n C1 H12 GER sing 85 n n C1 H13 GER sing 86 n n C2 C3 GER doub 87 e n C2 H21 GER sing 88 n n C3 C4 GER sing 89 n n C3 C5 GER sing 90 n n C4 H41 GER sing 91 n n C4 H42 GER sing 92 n n C4 H43 GER sing 93 n n C5 C6 GER sing 94 n n C5 H51 GER sing 95 n n C5 H52 GER sing 96 n n C6 C7 GER sing 97 n n C6 H61 GER sing 98 n n C6 H62 GER sing 99 n n C7 C8 GER doub 100 e n C7 H71 GER sing 101 n n C8 C9 GER sing 102 n n C8 C10 GER sing 103 n n C9 H91 GER sing 104 n n C9 H92 GER sing 105 n n C9 H93 GER sing 106 n n C10 C11 GER sing 107 n n C10 H101 GER sing 108 n n C10 H102 GER sing 109 n n C11 C12 GER sing 110 n n C11 H111 GER sing 111 n n C11 H112 GER sing 112 n n C12 C13 GER doub 113 e n C12 H121 GER sing 114 n n C13 C14 GER sing 115 n n C13 C15 GER sing 116 n n C14 H141 GER sing 117 n n C14 H142 GER sing 118 n n C14 H143 GER sing 119 n n C15 C16 GER sing 120 n n C15 H151 GER sing 121 n n C15 H152 GER sing 122 n n C16 C17 GER sing 123 n n C16 H161 GER sing 124 n n C16 H162 GER sing 125 n n C17 C18 GER doub 126 n n C17 H171 GER sing 127 n n C18 C19 GER sing 128 n n C18 C20 GER sing 129 n n C19 H191 GER sing 130 n n C19 H192 GER sing 131 n n C19 H193 GER sing 132 n n C20 H201 GER sing 133 n n C20 H202 GER sing 134 n n C20 H203 GER sing 135 n n # _atom_sites.entry_id 5U9J _atom_sites.fract_transf_matrix[1][1] 0.014422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00078 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019543 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009362 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GER A 1 301 301 GER GRG . D 3 IPA A 1 302 302 IPA IPA . E 4 NA A 1 303 1 NA NA . F 2 GER B 1 301 301 GER GRG . G 5 HOH A 1 401 79 HOH HOH . G 5 HOH A 2 402 127 HOH HOH . G 5 HOH A 3 403 134 HOH HOH . G 5 HOH A 4 404 78 HOH HOH . G 5 HOH A 5 405 11 HOH HOH . G 5 HOH A 6 406 107 HOH HOH . G 5 HOH A 7 407 60 HOH HOH . G 5 HOH A 8 408 126 HOH HOH . G 5 HOH A 9 409 25 HOH HOH . G 5 HOH A 10 410 38 HOH HOH . G 5 HOH A 11 411 21 HOH HOH . G 5 HOH A 12 412 45 HOH HOH . G 5 HOH A 13 413 103 HOH HOH . G 5 HOH A 14 414 10 HOH HOH . G 5 HOH A 15 415 28 HOH HOH . G 5 HOH A 16 416 115 HOH HOH . G 5 HOH A 17 417 129 HOH HOH . G 5 HOH A 18 418 116 HOH HOH . G 5 HOH A 19 419 33 HOH HOH . G 5 HOH A 20 420 91 HOH HOH . G 5 HOH A 21 421 135 HOH HOH . G 5 HOH A 22 422 118 HOH HOH . G 5 HOH A 23 423 88 HOH HOH . G 5 HOH A 24 424 132 HOH HOH . G 5 HOH A 25 425 19 HOH HOH . G 5 HOH A 26 426 55 HOH HOH . G 5 HOH A 27 427 102 HOH HOH . G 5 HOH A 28 428 26 HOH HOH . G 5 HOH A 29 429 29 HOH HOH . G 5 HOH A 30 430 61 HOH HOH . G 5 HOH A 31 431 99 HOH HOH . G 5 HOH A 32 432 70 HOH HOH . G 5 HOH A 33 433 16 HOH HOH . G 5 HOH A 34 434 4 HOH HOH . G 5 HOH A 35 435 62 HOH HOH . G 5 HOH A 36 436 32 HOH HOH . G 5 HOH A 37 437 53 HOH HOH . G 5 HOH A 38 438 30 HOH HOH . G 5 HOH A 39 439 7 HOH HOH . G 5 HOH A 40 440 12 HOH HOH . G 5 HOH A 41 441 37 HOH HOH . G 5 HOH A 42 442 14 HOH HOH . G 5 HOH A 43 443 136 HOH HOH . G 5 HOH A 44 444 128 HOH HOH . G 5 HOH A 45 445 75 HOH HOH . G 5 HOH A 46 446 36 HOH HOH . G 5 HOH A 47 447 105 HOH HOH . G 5 HOH A 48 448 113 HOH HOH . G 5 HOH A 49 449 65 HOH HOH . G 5 HOH A 50 450 64 HOH HOH . G 5 HOH A 51 451 39 HOH HOH . G 5 HOH A 52 452 40 HOH HOH . G 5 HOH A 53 453 57 HOH HOH . G 5 HOH A 54 454 108 HOH HOH . G 5 HOH A 55 455 86 HOH HOH . G 5 HOH A 56 456 50 HOH HOH . G 5 HOH A 57 457 59 HOH HOH . G 5 HOH A 58 458 67 HOH HOH . G 5 HOH A 59 459 73 HOH HOH . G 5 HOH A 60 460 114 HOH HOH . G 5 HOH A 61 461 87 HOH HOH . G 5 HOH A 62 462 58 HOH HOH . G 5 HOH A 63 463 117 HOH HOH . G 5 HOH A 64 464 43 HOH HOH . G 5 HOH A 65 465 81 HOH HOH . G 5 HOH A 66 466 82 HOH HOH . H 5 HOH B 1 401 111 HOH HOH . H 5 HOH B 2 402 98 HOH HOH . H 5 HOH B 3 403 49 HOH HOH . H 5 HOH B 4 404 9 HOH HOH . H 5 HOH B 5 405 48 HOH HOH . H 5 HOH B 6 406 97 HOH HOH . H 5 HOH B 7 407 76 HOH HOH . H 5 HOH B 8 408 109 HOH HOH . H 5 HOH B 9 409 44 HOH HOH . H 5 HOH B 10 410 31 HOH HOH . H 5 HOH B 11 411 3 HOH HOH . H 5 HOH B 12 412 24 HOH HOH . H 5 HOH B 13 413 1 HOH HOH . H 5 HOH B 14 414 104 HOH HOH . H 5 HOH B 15 415 46 HOH HOH . H 5 HOH B 16 416 22 HOH HOH . H 5 HOH B 17 417 18 HOH HOH . H 5 HOH B 18 418 35 HOH HOH . H 5 HOH B 19 419 68 HOH HOH . H 5 HOH B 20 420 54 HOH HOH . H 5 HOH B 21 421 5 HOH HOH . H 5 HOH B 22 422 6 HOH HOH . H 5 HOH B 23 423 80 HOH HOH . H 5 HOH B 24 424 100 HOH HOH . H 5 HOH B 25 425 66 HOH HOH . H 5 HOH B 26 426 23 HOH HOH . H 5 HOH B 27 427 27 HOH HOH . H 5 HOH B 28 428 8 HOH HOH . H 5 HOH B 29 429 101 HOH HOH . H 5 HOH B 30 430 84 HOH HOH . H 5 HOH B 31 431 15 HOH HOH . H 5 HOH B 32 432 131 HOH HOH . H 5 HOH B 33 433 71 HOH HOH . H 5 HOH B 34 434 63 HOH HOH . H 5 HOH B 35 435 72 HOH HOH . H 5 HOH B 36 436 83 HOH HOH . H 5 HOH B 37 437 137 HOH HOH . H 5 HOH B 38 438 74 HOH HOH . H 5 HOH B 39 439 133 HOH HOH . H 5 HOH B 40 440 56 HOH HOH . H 5 HOH B 41 441 17 HOH HOH . H 5 HOH B 42 442 20 HOH HOH . H 5 HOH B 43 443 122 HOH HOH . H 5 HOH B 44 444 13 HOH HOH . H 5 HOH B 45 445 130 HOH HOH . H 5 HOH B 46 446 77 HOH HOH . H 5 HOH B 47 447 93 HOH HOH . H 5 HOH B 48 448 34 HOH HOH . H 5 HOH B 49 449 106 HOH HOH . H 5 HOH B 50 450 69 HOH HOH . H 5 HOH B 51 451 124 HOH HOH . H 5 HOH B 52 452 2 HOH HOH . H 5 HOH B 53 453 90 HOH HOH . H 5 HOH B 54 454 52 HOH HOH . H 5 HOH B 55 455 138 HOH HOH . H 5 HOH B 56 456 94 HOH HOH . H 5 HOH B 57 457 120 HOH HOH . H 5 HOH B 58 458 119 HOH HOH . H 5 HOH B 59 459 121 HOH HOH . H 5 HOH B 60 460 41 HOH HOH . H 5 HOH B 61 461 47 HOH HOH . H 5 HOH B 62 462 110 HOH HOH . H 5 HOH B 63 463 85 HOH HOH . H 5 HOH B 64 464 142 HOH HOH . H 5 HOH B 65 465 125 HOH HOH . H 5 HOH B 66 466 42 HOH HOH . H 5 HOH B 67 467 140 HOH HOH . H 5 HOH B 68 468 123 HOH HOH . H 5 HOH B 69 469 141 HOH HOH . H 5 HOH B 70 470 112 HOH HOH . H 5 HOH B 71 471 95 HOH HOH . H 5 HOH B 72 472 89 HOH HOH . H 5 HOH B 73 473 96 HOH HOH . H 5 HOH B 74 474 139 HOH HOH . H 5 HOH B 75 475 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 GER . . . C 2 24.675 1.487 7.987 1 49.14 ? C5 GER 301 A 1 HETATM 2 C C6 GER . . . C 2 23.559 0.776 8.807 1 43.71 ? C6 GER 301 A 1 HETATM 3 C C7 GER . . . C 2 23.722 1.142 10.285 1 56.1 ? C7 GER 301 A 1 HETATM 4 C C8 GER . . . C 2 23.323 0.386 11.349 1 44.49 ? C8 GER 301 A 1 HETATM 5 C C9 GER . . . C 2 23.616 0.982 12.685 1 47.43 ? C9 GER 301 A 1 HETATM 6 C C10 GER . . . C 2 22.63 -0.988 11.225 1 49.31 ? C10 GER 301 A 1 HETATM 7 C C11 GER . . . C 2 22.062 -1.645 12.537 1 37.43 ? C11 GER 301 A 1 HETATM 8 C C12 GER . . . C 2 20.565 -1.304 12.597 1 41.36 ? C12 GER 301 A 1 HETATM 9 C C13 GER . . . C 2 19.554 -2.191 12.468 1 42.19 ? C13 GER 301 A 1 HETATM 10 C C14 GER . . . C 2 18.135 -1.621 12.543 1 47.38 ? C14 GER 301 A 1 HETATM 11 C C15 GER . . . C 2 19.654 -3.72 12.248 1 42 ? C15 GER 301 A 1 HETATM 12 C C16 GER . . . C 2 19.525 -4.091 10.759 1 40.33 ? C16 GER 301 A 1 HETATM 13 C C17 GER . . . C 2 18.184 -4.808 10.482 1 45.92 ? C17 GER 301 A 1 HETATM 14 C C18 GER . . . C 2 18.028 -5.681 9.475 1 47.29 ? C18 GER 301 A 1 HETATM 15 C C19 GER . . . C 2 16.669 -6.353 9.282 1 46.47 ? C19 GER 301 A 1 HETATM 16 C C20 GER . . . C 2 19.158 -6.053 8.529 1 45.05 ? C20 GER 301 A 1 HETATM 17 H H51 GER . . . C 2 24.721 2.421 8.246 1 58.97 ? H51 GER 301 A 1 HETATM 18 H H52 GER . . . C 2 25.528 1.06 8.165 1 58.97 ? H52 GER 301 A 1 HETATM 19 H H61 GER . . . C 2 22.689 1.069 8.493 1 52.46 ? H61 GER 301 A 1 HETATM 20 H H62 GER . . . C 2 23.637 -0.185 8.699 1 52.46 ? H62 GER 301 A 1 HETATM 21 H H71 GER . . . C 2 24.135 1.953 10.476 1 67.32 ? H71 GER 301 A 1 HETATM 22 H H91 GER . . . C 2 24.207 0.392 13.179 1 56.92 ? H91 GER 301 A 1 HETATM 23 H H92 GER . . . C 2 22.788 1.096 13.176 1 56.92 ? H92 GER 301 A 1 HETATM 24 H H93 GER . . . C 2 24.044 1.844 12.567 1 56.92 ? H93 GER 301 A 1 HETATM 25 H H101 GER . . . C 2 21.893 -0.89 10.602 1 59.17 ? H101 GER 301 A 1 HETATM 26 H H102 GER . . . C 2 23.269 -1.607 10.838 1 59.17 ? H102 GER 301 A 1 HETATM 27 H H111 GER . . . C 2 22.182 -2.607 12.504 1 44.92 ? H111 GER 301 A 1 HETATM 28 H H112 GER . . . C 2 22.516 -1.281 13.313 1 44.92 ? H112 GER 301 A 1 HETATM 29 H H121 GER . . . C 2 20.336 -0.411 12.718 1 49.63 ? H121 GER 301 A 1 HETATM 30 H H141 GER . . . C 2 17.5 -2.298 12.261 1 56.85 ? H141 GER 301 A 1 HETATM 31 H H142 GER . . . C 2 17.941 -1.356 13.456 1 56.85 ? H142 GER 301 A 1 HETATM 32 H H143 GER . . . C 2 18.066 -0.849 11.96 1 56.85 ? H143 GER 301 A 1 HETATM 33 H H151 GER . . . C 2 20.512 -4.032 12.578 1 50.4 ? H151 GER 301 A 1 HETATM 34 H H152 GER . . . C 2 18.946 -4.159 12.745 1 50.4 ? H152 GER 301 A 1 HETATM 35 H H161 GER . . . C 2 19.571 -3.282 10.224 1 48.4 ? H161 GER 301 A 1 HETATM 36 H H162 GER . . . C 2 20.257 -4.677 10.512 1 48.4 ? H162 GER 301 A 1 HETATM 37 H H171 GER . . . C 2 17.457 -4.625 11.032 1 55.11 ? H171 GER 301 A 1 HETATM 38 H H191 GER . . . C 2 16.366 -6.719 10.128 1 55.77 ? H191 GER 301 A 1 HETATM 39 H H192 GER . . . C 2 16.751 -7.067 8.631 1 55.77 ? H192 GER 301 A 1 HETATM 40 H H193 GER . . . C 2 16.027 -5.698 8.965 1 55.77 ? H193 GER 301 A 1 HETATM 41 H H201 GER . . . C 2 19.864 -6.496 9.026 1 54.06 ? H201 GER 301 A 1 HETATM 42 H H202 GER . . . C 2 18.822 -6.65 7.842 1 54.06 ? H202 GER 301 A 1 HETATM 43 H H203 GER . . . C 2 19.51 -5.249 8.115 1 54.06 ? H203 GER 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #