data_5U9J # _model_server_result.job_id cm9KEwnm0qPzl0e6yaOLtQ _model_server_result.datetime_utc '2024-11-24 21:23:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5u9j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 5U9J # _exptl.entry_id 5U9J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 274.484 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'GERAN-8-YL GERAN' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.09 _cell.angle_gamma 90 _cell.entry_id 5U9J _cell.length_a 69.34 _cell.length_b 51.17 _cell.length_c 106.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5U9J _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 160 A GLU 152 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc2 E NA NA . A NA 303 1_555 B O ARG 54 B ARG 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc3 E NA NA . A NA 303 1_555 H O HOH . B HOH 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? # _chem_comp.formula 'C20 H34' _chem_comp.formula_weight 274.484 _chem_comp.id GER _chem_comp.mon_nstd_flag . _chem_comp.name 'GERAN-8-YL GERAN' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GER sing 83 n n C1 H11 GER sing 84 n n C1 H12 GER sing 85 n n C1 H13 GER sing 86 n n C2 C3 GER doub 87 e n C2 H21 GER sing 88 n n C3 C4 GER sing 89 n n C3 C5 GER sing 90 n n C4 H41 GER sing 91 n n C4 H42 GER sing 92 n n C4 H43 GER sing 93 n n C5 C6 GER sing 94 n n C5 H51 GER sing 95 n n C5 H52 GER sing 96 n n C6 C7 GER sing 97 n n C6 H61 GER sing 98 n n C6 H62 GER sing 99 n n C7 C8 GER doub 100 e n C7 H71 GER sing 101 n n C8 C9 GER sing 102 n n C8 C10 GER sing 103 n n C9 H91 GER sing 104 n n C9 H92 GER sing 105 n n C9 H93 GER sing 106 n n C10 C11 GER sing 107 n n C10 H101 GER sing 108 n n C10 H102 GER sing 109 n n C11 C12 GER sing 110 n n C11 H111 GER sing 111 n n C11 H112 GER sing 112 n n C12 C13 GER doub 113 e n C12 H121 GER sing 114 n n C13 C14 GER sing 115 n n C13 C15 GER sing 116 n n C14 H141 GER sing 117 n n C14 H142 GER sing 118 n n C14 H143 GER sing 119 n n C15 C16 GER sing 120 n n C15 H151 GER sing 121 n n C15 H152 GER sing 122 n n C16 C17 GER sing 123 n n C16 H161 GER sing 124 n n C16 H162 GER sing 125 n n C17 C18 GER doub 126 n n C17 H171 GER sing 127 n n C18 C19 GER sing 128 n n C18 C20 GER sing 129 n n C19 H191 GER sing 130 n n C19 H192 GER sing 131 n n C19 H193 GER sing 132 n n C20 H201 GER sing 133 n n C20 H202 GER sing 134 n n C20 H203 GER sing 135 n n # _atom_sites.entry_id 5U9J _atom_sites.fract_transf_matrix[1][1] 0.014422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00078 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019543 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009362 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GER A 1 301 301 GER GRG . D 3 IPA A 1 302 302 IPA IPA . E 4 NA A 1 303 1 NA NA . F 2 GER B 1 301 301 GER GRG . G 5 HOH A 1 401 79 HOH HOH . G 5 HOH A 2 402 127 HOH HOH . G 5 HOH A 3 403 134 HOH HOH . G 5 HOH A 4 404 78 HOH HOH . G 5 HOH A 5 405 11 HOH HOH . G 5 HOH A 6 406 107 HOH HOH . G 5 HOH A 7 407 60 HOH HOH . G 5 HOH A 8 408 126 HOH HOH . G 5 HOH A 9 409 25 HOH HOH . G 5 HOH A 10 410 38 HOH HOH . G 5 HOH A 11 411 21 HOH HOH . G 5 HOH A 12 412 45 HOH HOH . G 5 HOH A 13 413 103 HOH HOH . G 5 HOH A 14 414 10 HOH HOH . G 5 HOH A 15 415 28 HOH HOH . G 5 HOH A 16 416 115 HOH HOH . G 5 HOH A 17 417 129 HOH HOH . G 5 HOH A 18 418 116 HOH HOH . G 5 HOH A 19 419 33 HOH HOH . G 5 HOH A 20 420 91 HOH HOH . G 5 HOH A 21 421 135 HOH HOH . G 5 HOH A 22 422 118 HOH HOH . G 5 HOH A 23 423 88 HOH HOH . G 5 HOH A 24 424 132 HOH HOH . G 5 HOH A 25 425 19 HOH HOH . G 5 HOH A 26 426 55 HOH HOH . G 5 HOH A 27 427 102 HOH HOH . G 5 HOH A 28 428 26 HOH HOH . G 5 HOH A 29 429 29 HOH HOH . G 5 HOH A 30 430 61 HOH HOH . G 5 HOH A 31 431 99 HOH HOH . G 5 HOH A 32 432 70 HOH HOH . G 5 HOH A 33 433 16 HOH HOH . G 5 HOH A 34 434 4 HOH HOH . G 5 HOH A 35 435 62 HOH HOH . G 5 HOH A 36 436 32 HOH HOH . G 5 HOH A 37 437 53 HOH HOH . G 5 HOH A 38 438 30 HOH HOH . G 5 HOH A 39 439 7 HOH HOH . G 5 HOH A 40 440 12 HOH HOH . G 5 HOH A 41 441 37 HOH HOH . G 5 HOH A 42 442 14 HOH HOH . G 5 HOH A 43 443 136 HOH HOH . G 5 HOH A 44 444 128 HOH HOH . G 5 HOH A 45 445 75 HOH HOH . G 5 HOH A 46 446 36 HOH HOH . G 5 HOH A 47 447 105 HOH HOH . G 5 HOH A 48 448 113 HOH HOH . G 5 HOH A 49 449 65 HOH HOH . G 5 HOH A 50 450 64 HOH HOH . G 5 HOH A 51 451 39 HOH HOH . G 5 HOH A 52 452 40 HOH HOH . G 5 HOH A 53 453 57 HOH HOH . G 5 HOH A 54 454 108 HOH HOH . G 5 HOH A 55 455 86 HOH HOH . G 5 HOH A 56 456 50 HOH HOH . G 5 HOH A 57 457 59 HOH HOH . G 5 HOH A 58 458 67 HOH HOH . G 5 HOH A 59 459 73 HOH HOH . G 5 HOH A 60 460 114 HOH HOH . G 5 HOH A 61 461 87 HOH HOH . G 5 HOH A 62 462 58 HOH HOH . G 5 HOH A 63 463 117 HOH HOH . G 5 HOH A 64 464 43 HOH HOH . G 5 HOH A 65 465 81 HOH HOH . G 5 HOH A 66 466 82 HOH HOH . H 5 HOH B 1 401 111 HOH HOH . H 5 HOH B 2 402 98 HOH HOH . H 5 HOH B 3 403 49 HOH HOH . H 5 HOH B 4 404 9 HOH HOH . H 5 HOH B 5 405 48 HOH HOH . H 5 HOH B 6 406 97 HOH HOH . H 5 HOH B 7 407 76 HOH HOH . H 5 HOH B 8 408 109 HOH HOH . H 5 HOH B 9 409 44 HOH HOH . H 5 HOH B 10 410 31 HOH HOH . H 5 HOH B 11 411 3 HOH HOH . H 5 HOH B 12 412 24 HOH HOH . H 5 HOH B 13 413 1 HOH HOH . H 5 HOH B 14 414 104 HOH HOH . H 5 HOH B 15 415 46 HOH HOH . H 5 HOH B 16 416 22 HOH HOH . H 5 HOH B 17 417 18 HOH HOH . H 5 HOH B 18 418 35 HOH HOH . H 5 HOH B 19 419 68 HOH HOH . H 5 HOH B 20 420 54 HOH HOH . H 5 HOH B 21 421 5 HOH HOH . H 5 HOH B 22 422 6 HOH HOH . H 5 HOH B 23 423 80 HOH HOH . H 5 HOH B 24 424 100 HOH HOH . H 5 HOH B 25 425 66 HOH HOH . H 5 HOH B 26 426 23 HOH HOH . H 5 HOH B 27 427 27 HOH HOH . H 5 HOH B 28 428 8 HOH HOH . H 5 HOH B 29 429 101 HOH HOH . H 5 HOH B 30 430 84 HOH HOH . H 5 HOH B 31 431 15 HOH HOH . H 5 HOH B 32 432 131 HOH HOH . H 5 HOH B 33 433 71 HOH HOH . H 5 HOH B 34 434 63 HOH HOH . H 5 HOH B 35 435 72 HOH HOH . H 5 HOH B 36 436 83 HOH HOH . H 5 HOH B 37 437 137 HOH HOH . H 5 HOH B 38 438 74 HOH HOH . H 5 HOH B 39 439 133 HOH HOH . H 5 HOH B 40 440 56 HOH HOH . H 5 HOH B 41 441 17 HOH HOH . H 5 HOH B 42 442 20 HOH HOH . H 5 HOH B 43 443 122 HOH HOH . H 5 HOH B 44 444 13 HOH HOH . H 5 HOH B 45 445 130 HOH HOH . H 5 HOH B 46 446 77 HOH HOH . H 5 HOH B 47 447 93 HOH HOH . H 5 HOH B 48 448 34 HOH HOH . H 5 HOH B 49 449 106 HOH HOH . H 5 HOH B 50 450 69 HOH HOH . H 5 HOH B 51 451 124 HOH HOH . H 5 HOH B 52 452 2 HOH HOH . H 5 HOH B 53 453 90 HOH HOH . H 5 HOH B 54 454 52 HOH HOH . H 5 HOH B 55 455 138 HOH HOH . H 5 HOH B 56 456 94 HOH HOH . H 5 HOH B 57 457 120 HOH HOH . H 5 HOH B 58 458 119 HOH HOH . H 5 HOH B 59 459 121 HOH HOH . H 5 HOH B 60 460 41 HOH HOH . H 5 HOH B 61 461 47 HOH HOH . H 5 HOH B 62 462 110 HOH HOH . H 5 HOH B 63 463 85 HOH HOH . H 5 HOH B 64 464 142 HOH HOH . H 5 HOH B 65 465 125 HOH HOH . H 5 HOH B 66 466 42 HOH HOH . H 5 HOH B 67 467 140 HOH HOH . H 5 HOH B 68 468 123 HOH HOH . H 5 HOH B 69 469 141 HOH HOH . H 5 HOH B 70 470 112 HOH HOH . H 5 HOH B 71 471 95 HOH HOH . H 5 HOH B 72 472 89 HOH HOH . H 5 HOH B 73 473 96 HOH HOH . H 5 HOH B 74 474 139 HOH HOH . H 5 HOH B 75 475 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GER . . . F 2 22.62 -10.87 46.73 1 74.56 ? C1 GER 301 B 1 HETATM 2 C C2 GER . . . F 2 22.306 -10.13 45.403 1 63.8 ? C2 GER 301 B 1 HETATM 3 C C3 GER . . . F 2 21.948 -8.84 45.413 1 66.49 ? C3 GER 301 B 1 HETATM 4 C C4 GER . . . F 2 21.856 -8.092 46.755 1 72.88 ? C4 GER 301 B 1 HETATM 5 C C5 GER . . . F 2 21.625 -8.031 44.137 1 65.31 ? C5 GER 301 B 1 HETATM 6 C C6 GER . . . F 2 21.128 -8.801 42.877 1 57.59 ? C6 GER 301 B 1 HETATM 7 C C7 GER . . . F 2 20.691 -7.806 41.791 1 46.35 ? C7 GER 301 B 1 HETATM 8 C C8 GER . . . F 2 19.522 -7.091 41.81 1 38.94 ? C8 GER 301 B 1 HETATM 9 C C9 GER . . . F 2 18.575 -7.273 42.971 1 45.85 ? C9 GER 301 B 1 HETATM 10 C C10 GER . . . F 2 19.235 -6.099 40.64 1 39.09 ? C10 GER 301 B 1 HETATM 11 C C11 GER . . . F 2 17.752 -5.651 40.409 1 32.76 ? C11 GER 301 B 1 HETATM 12 C C12 GER . . . F 2 17.347 -4.887 41.673 1 40.78 ? C12 GER 301 B 1 HETATM 13 C C13 GER . . . F 2 16.15 -4.312 41.766 1 43.81 ? C13 GER 301 B 1 HETATM 14 C C14 GER . . . F 2 15.2 -4.424 40.563 1 35.39 ? C14 GER 301 B 1 HETATM 15 C C15 GER . . . F 2 15.736 -3.603 43.076 1 35.29 ? C15 GER 301 B 1 HETATM 16 C C16 GER . . . F 2 15.897 -2.095 42.995 1 45.11 ? C16 GER 301 B 1 HETATM 17 C C17 GER . . . F 2 15.787 -1.536 44.433 1 31.78 ? C17 GER 301 B 1 HETATM 18 C C18 GER . . . F 2 14.601 -1.38 44.995 1 41.52 ? C18 GER 301 B 1 HETATM 19 C C19 GER . . . F 2 13.295 -1.664 44.289 1 43.56 ? C19 GER 301 B 1 HETATM 20 C C20 GER . . . F 2 14.529 -0.814 46.392 1 47.45 ? C20 GER 301 B 1 HETATM 21 H H12 GER . . . F 2 22.175 -11.732 46.732 1 89.48 ? H12 GER 301 B 1 HETATM 22 H H13 GER . . . F 2 23.578 -11 46.81 1 89.48 ? H13 GER 301 B 1 HETATM 23 H H21 GER . . . F 2 22.366 -10.586 44.595 1 76.56 ? H21 GER 301 B 1 HETATM 24 H H41 GER . . . F 2 20.923 -7.966 46.99 1 87.46 ? H41 GER 301 B 1 HETATM 25 H H42 GER . . . F 2 22.296 -8.611 47.445 1 87.46 ? H42 GER 301 B 1 HETATM 26 H H43 GER . . . F 2 22.289 -7.228 46.674 1 87.46 ? H43 GER 301 B 1 HETATM 27 H H51 GER . . . F 2 20.945 -7.379 44.369 1 78.37 ? H51 GER 301 B 1 HETATM 28 H H52 GER . . . F 2 22.427 -7.547 43.887 1 78.37 ? H52 GER 301 B 1 HETATM 29 H H61 GER . . . F 2 21.846 -9.355 42.535 1 69.11 ? H61 GER 301 B 1 HETATM 30 H H62 GER . . . F 2 20.375 -9.363 43.119 1 69.11 ? H62 GER 301 B 1 HETATM 31 H H71 GER . . . F 2 21.266 -7.672 41.072 1 55.63 ? H71 GER 301 B 1 HETATM 32 H H91 GER . . . F 2 17.717 -7.584 42.642 1 55.03 ? H91 GER 301 B 1 HETATM 33 H H92 GER . . . F 2 18.457 -6.425 43.428 1 55.03 ? H92 GER 301 B 1 HETATM 34 H H93 GER . . . F 2 18.941 -7.925 43.589 1 55.03 ? H93 GER 301 B 1 HETATM 35 H H101 GER . . . F 2 19.763 -5.3 40.794 1 46.91 ? H101 GER 301 B 1 HETATM 36 H H102 GER . . . F 2 19.549 -6.511 39.82 1 46.91 ? H102 GER 301 B 1 HETATM 37 H H111 GER . . . F 2 17.694 -5.071 39.634 1 39.31 ? H111 GER 301 B 1 HETATM 38 H H112 GER . . . F 2 17.182 -6.427 40.291 1 39.31 ? H112 GER 301 B 1 HETATM 39 H H121 GER . . . F 2 17.929 -4.855 42.398 1 48.93 ? H121 GER 301 B 1 HETATM 40 H H141 GER . . . F 2 15.51 -3.843 39.851 1 42.46 ? H141 GER 301 B 1 HETATM 41 H H142 GER . . . F 2 14.307 -4.158 40.831 1 42.46 ? H142 GER 301 B 1 HETATM 42 H H143 GER . . . F 2 15.184 -5.342 40.248 1 42.46 ? H143 GER 301 B 1 HETATM 43 H H151 GER . . . F 2 14.806 -3.809 43.263 1 42.34 ? H151 GER 301 B 1 HETATM 44 H H152 GER . . . F 2 16.284 -3.938 43.802 1 42.34 ? H152 GER 301 B 1 HETATM 45 H H161 GER . . . F 2 16.766 -1.876 42.622 1 54.13 ? H161 GER 301 B 1 HETATM 46 H H162 GER . . . F 2 15.196 -1.718 42.44 1 54.13 ? H162 GER 301 B 1 HETATM 47 H H171 GER . . . F 2 16.557 -1.334 44.912 1 38.14 ? H171 GER 301 B 1 HETATM 48 H H191 GER . . . F 2 13.28 -1.199 43.438 1 52.27 ? H191 GER 301 B 1 HETATM 49 H H192 GER . . . F 2 13.211 -2.619 44.138 1 52.27 ? H192 GER 301 B 1 HETATM 50 H H193 GER . . . F 2 12.557 -1.357 44.839 1 52.27 ? H193 GER 301 B 1 HETATM 51 H H201 GER . . . F 2 13.612 -0.843 46.706 1 56.94 ? H201 GER 301 B 1 HETATM 52 H H202 GER . . . F 2 14.84 0.105 46.384 1 56.94 ? H202 GER 301 B 1 HETATM 53 H H203 GER . . . F 2 15.091 -1.34 46.983 1 56.94 ? H203 GER 301 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 53 #