data_5UAL # _model_server_result.job_id NPg4mpnN8na_qlR0FzUlKA _model_server_result.datetime_utc '2024-11-15 20:36:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ual # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":3001}' # _entry.id 5UAL # _exptl.entry_id 5UAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 822.94 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RIFAMPICIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UAL _cell.length_a 187.372 _cell.length_b 205.95 _cell.length_c 309.692 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,M,N,O,P 1 1 G,H,I,J,K,L,Q,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D SG CYS 70 D CYS 70 1_555 O ZN ZN . D ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc2 D SG CYS 72 D CYS 72 1_555 O ZN ZN . D ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc3 D SG CYS 85 D CYS 85 1_555 O ZN ZN . D ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc4 D OD2 ASP 462 D ASP 462 1_555 N MG MG . D MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc5 D SG CYS 814 D CYS 814 1_555 P ZN ZN . D ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc6 D SG CYS 888 D CYS 888 1_555 P ZN ZN . D ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc7 D SG CYS 895 D CYS 895 1_555 P ZN ZN . D ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc8 D SG CYS 898 D CYS 898 1_555 P ZN ZN . D ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc9 J SG CYS 70 J CYS 70 1_555 R ZN ZN . J ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc10 J SG CYS 72 J CYS 72 1_555 R ZN ZN . J ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc11 J SG CYS 85 J CYS 85 1_555 R ZN ZN . J ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc12 J OD2 ASP 462 J ASP 462 1_555 Q MG MG . J MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc13 J SG CYS 814 J CYS 814 1_555 S ZN ZN . J ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc14 J SG CYS 888 J CYS 888 1_555 S ZN ZN . J ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc15 J SG CYS 895 J CYS 895 1_555 S ZN ZN . J ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc16 J SG CYS 898 J CYS 898 1_555 S ZN ZN . J ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? # _chem_comp.formula 'C43 H58 N4 O12' _chem_comp.formula_weight 822.94 _chem_comp.id RFP _chem_comp.mon_nstd_flag . _chem_comp.name RIFAMPICIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RFP doub 275 n y C1 C9 RFP sing 276 n y C1 O1 RFP sing 277 n n C2 C3 RFP sing 278 n y C2 N1 RFP sing 279 n n C3 C4 RFP doub 280 n y C3 C43 RFP sing 281 n n C4 C10 RFP sing 282 n y C4 O12 RFP sing 283 n n C5 C6 RFP doub 284 n y C5 C10 RFP sing 285 n y C5 C11 RFP sing 286 n n C6 C7 RFP sing 287 n y C6 O3 RFP sing 288 n n C7 C8 RFP doub 289 n y C7 C14 RFP sing 290 n n C8 C9 RFP sing 291 n y C8 O2 RFP sing 292 n n C9 C10 RFP doub 293 n y C11 C12 RFP sing 294 n n C11 O4 RFP doub 295 n n C12 C13 RFP sing 296 n n C12 O3 RFP sing 297 n n C12 O5 RFP sing 298 n n C13 H131 RFP sing 299 n n C13 H132 RFP sing 300 n n C13 H133 RFP sing 301 n n C14 H141 RFP sing 302 n n C14 H142 RFP sing 303 n n C14 H143 RFP sing 304 n n C15 C16 RFP sing 305 n n C15 N1 RFP sing 306 n n C15 O11 RFP doub 307 n n C16 C17 RFP doub 308 z n C16 C30 RFP sing 309 n n C17 C18 RFP sing 310 n n C17 H17C RFP sing 311 n n C18 C19 RFP doub 312 e n C18 H18C RFP sing 313 n n C19 C20 RFP sing 314 n n C19 H19C RFP sing 315 n n C20 C21 RFP sing 316 n n C20 C31 RFP sing 317 n n C20 H20C RFP sing 318 n n C21 C22 RFP sing 319 n n C21 O10 RFP sing 320 n n C21 H211 RFP sing 321 n n C22 C23 RFP sing 322 n n C22 C32 RFP sing 323 n n C22 H22C RFP sing 324 n n C23 C24 RFP sing 325 n n C23 O9 RFP sing 326 n n C23 H23C RFP sing 327 n n C24 C25 RFP sing 328 n n C24 C33 RFP sing 329 n n C24 H24C RFP sing 330 n n C25 C26 RFP sing 331 n n C25 O7 RFP sing 332 n n C25 H25C RFP sing 333 n n C26 C27 RFP sing 334 n n C26 C34 RFP sing 335 n n C26 H26C RFP sing 336 n n C27 C28 RFP sing 337 n n C27 O6 RFP sing 338 n n C27 H27C RFP sing 339 n n C28 C29 RFP doub 340 e n C28 H28C RFP sing 341 n n C29 O5 RFP sing 342 n n C29 H29C RFP sing 343 n n C30 H301 RFP sing 344 n n C30 H302 RFP sing 345 n n C30 H303 RFP sing 346 n n C31 H311 RFP sing 347 n n C31 H312 RFP sing 348 n n C31 H313 RFP sing 349 n n C32 H321 RFP sing 350 n n C32 H322 RFP sing 351 n n C32 H323 RFP sing 352 n n C33 H331 RFP sing 353 n n C33 H332 RFP sing 354 n n C33 H333 RFP sing 355 n n C34 H341 RFP sing 356 n n C34 H342 RFP sing 357 n n C34 H343 RFP sing 358 n n C35 C36 RFP sing 359 n n C35 O7 RFP sing 360 n n C35 O8 RFP doub 361 n n C36 H361 RFP sing 362 n n C36 H362 RFP sing 363 n n C36 H363 RFP sing 364 n n C37 O6 RFP sing 365 n n C37 H371 RFP sing 366 n n C37 H372 RFP sing 367 n n C37 H373 RFP sing 368 n n C38 N4 RFP sing 369 n n C38 H381 RFP sing 370 n n C38 H382 RFP sing 371 n n C38 H383 RFP sing 372 n n C39 C40 RFP sing 373 n n C39 N4 RFP sing 374 n n C39 H391 RFP sing 375 n n C39 H392 RFP sing 376 n n C40 N3 RFP sing 377 n n C40 H401 RFP sing 378 n n C40 H402 RFP sing 379 n n C41 C42 RFP sing 380 n n C41 N3 RFP sing 381 n n C41 H411 RFP sing 382 n n C41 H412 RFP sing 383 n n C42 N4 RFP sing 384 n n C42 H421 RFP sing 385 n n C42 H422 RFP sing 386 n n C43 N2 RFP doub 387 e n C43 HC43 RFP sing 388 n n N1 HN1 RFP sing 389 n n N2 N3 RFP sing 390 n n O1 HO1 RFP sing 391 n n O2 HO2 RFP sing 392 n n O9 HO9 RFP sing 393 n n O10 H10O RFP sing 394 n n O12 H12O RFP sing 395 n n # _atom_sites.entry_id 5UAL _atom_sites.fract_transf_matrix[1][1] 0.005337 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004856 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003229 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 6 RFP C 1 3001 3001 RFP RFP . N 7 MG D 1 1501 1501 MG MG . O 8 ZN D 1 1502 1502 ZN ZN . P 8 ZN D 1 1503 1503 ZN ZN . Q 7 MG J 1 1501 1501 MG MG . R 8 ZN J 1 1502 1502 ZN ZN . S 8 ZN J 1 1503 1503 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RFP . . . M 6 -113.9 -26.734 -8.429 1 131.85 ? C1 RFP 3001 C 1 HETATM 2 C C2 RFP . . . M 6 -112.727 -26.231 -7.84 1 132.37 ? C2 RFP 3001 C 1 HETATM 3 C C3 RFP . . . M 6 -111.495 -26.341 -8.466 1 145.4 ? C3 RFP 3001 C 1 HETATM 4 C C4 RFP . . . M 6 -111.392 -26.927 -9.718 1 151.84 ? C4 RFP 3001 C 1 HETATM 5 C C5 RFP . . . M 6 -112.566 -28.054 -11.636 1 152.8 ? C5 RFP 3001 C 1 HETATM 6 C C6 RFP . . . M 6 -113.799 -28.503 -12.142 1 150.56 ? C6 RFP 3001 C 1 HETATM 7 C C7 RFP . . . M 6 -115.013 -28.431 -11.559 1 139.97 ? C7 RFP 3001 C 1 HETATM 8 C C8 RFP . . . M 6 -115.041 -27.832 -10.299 1 130.14 ? C8 RFP 3001 C 1 HETATM 9 C C9 RFP . . . M 6 -113.808 -27.342 -9.707 1 133.48 ? C9 RFP 3001 C 1 HETATM 10 C C10 RFP . . . M 6 -112.523 -27.436 -10.361 1 144.13 ? C10 RFP 3001 C 1 HETATM 11 C C11 RFP . . . M 6 -111.67 -28.396 -12.662 1 162.52 ? C11 RFP 3001 C 1 HETATM 12 C C12 RFP . . . M 6 -112.155 -29.196 -13.645 1 167.02 ? C12 RFP 3001 C 1 HETATM 13 C C13 RFP . . . M 6 -111.696 -28.647 -14.961 1 170.5 ? C13 RFP 3001 C 1 HETATM 14 C C14 RFP . . . M 6 -116.241 -28.956 -12.216 1 141.54 ? C14 RFP 3001 C 1 HETATM 15 C C15 RFP . . . M 6 -113.838 -25.494 -5.581 1 131.77 ? C15 RFP 3001 C 1 HETATM 16 C C16 RFP . . . M 6 -113.599 -24.864 -4.213 1 149.46 ? C16 RFP 3001 C 1 HETATM 17 C C17 RFP . . . M 6 -113.245 -25.805 -3.226 1 152.53 ? C17 RFP 3001 C 1 HETATM 18 C C18 RFP . . . M 6 -112.996 -27.266 -3.668 1 112.88 ? C18 RFP 3001 C 1 HETATM 19 C C19 RFP . . . M 6 -113.191 -28.358 -2.809 1 104.42 ? C19 RFP 3001 C 1 HETATM 20 C C20 RFP . . . M 6 -112.172 -29.468 -2.81 1 99.6 ? C20 RFP 3001 C 1 HETATM 21 C C21 RFP . . . M 6 -112.39 -30.341 -4.013 1 94.72 ? C21 RFP 3001 C 1 HETATM 22 C C22 RFP . . . M 6 -111.419 -31.486 -4.025 1 93.59 ? C22 RFP 3001 C 1 HETATM 23 C C23 RFP . . . M 6 -111.709 -32.415 -5.173 1 94.56 ? C23 RFP 3001 C 1 HETATM 24 C C24 RFP . . . M 6 -110.971 -31.929 -6.371 1 98 ? C24 RFP 3001 C 1 HETATM 25 C C25 RFP . . . M 6 -111.512 -32.518 -7.658 1 105.18 ? C25 RFP 3001 C 1 HETATM 26 C C26 RFP . . . M 6 -111.394 -31.569 -8.798 1 121.76 ? C26 RFP 3001 C 1 HETATM 27 C C27 RFP . . . M 6 -111.57 -32.346 -10.071 1 137.39 ? C27 RFP 3001 C 1 HETATM 28 C C28 RFP . . . M 6 -111.265 -31.49 -11.27 1 162.59 ? C28 RFP 3001 C 1 HETATM 29 C C29 RFP . . . M 6 -112.149 -31.263 -12.328 1 177.91 ? C29 RFP 3001 C 1 HETATM 30 C C30 RFP . . . M 6 -113.079 -23.437 -4.191 1 147.76 ? C30 RFP 3001 C 1 HETATM 31 C C31 RFP . . . M 6 -110.813 -28.875 -2.825 1 124.56 ? C31 RFP 3001 C 1 HETATM 32 C C32 RFP . . . M 6 -111.43 -32.284 -2.752 1 91.9 ? C32 RFP 3001 C 1 HETATM 33 C C33 RFP . . . M 6 -109.531 -32.308 -6.197 1 94.35 ? C33 RFP 3001 C 1 HETATM 34 C C34 RFP . . . M 6 -112.431 -30.491 -8.748 1 144.63 ? C34 RFP 3001 C 1 HETATM 35 C C35 RFP . . . M 6 -111.054 -34.862 -7.64 1 110.88 ? C35 RFP 3001 C 1 HETATM 36 C C36 RFP . . . M 6 -110.418 -35.996 -8.356 1 113.29 ? C36 RFP 3001 C 1 HETATM 37 C C37 RFP . . . M 6 -113.114 -34.089 -10.512 1 139.92 ? C37 RFP 3001 C 1 HETATM 38 C C38 RFP . . . M 6 -105.086 -26.429 -3.617 1 198.05 ? C38 RFP 3001 C 1 HETATM 39 C C39 RFP . . . M 6 -106.649 -27.465 -5.272 1 187.57 ? C39 RFP 3001 C 1 HETATM 40 C C40 RFP . . . M 6 -107.551 -27.196 -6.445 1 192.51 ? C40 RFP 3001 C 1 HETATM 41 C C41 RFP . . . M 6 -108.17 -25.003 -5.43 1 202.13 ? C41 RFP 3001 C 1 HETATM 42 C C42 RFP . . . M 6 -107.26 -25.349 -4.256 1 198.19 ? C42 RFP 3001 C 1 HETATM 43 C C43 RFP . . . M 6 -110.241 -25.837 -7.738 1 156 ? C43 RFP 3001 C 1 HETATM 44 N N1 RFP . . . M 6 -112.679 -25.608 -6.51 1 122.38 ? N1 RFP 3001 C 1 HETATM 45 N N2 RFP . . . M 6 -109.593 -26.687 -6.938 1 174.35 ? N2 RFP 3001 C 1 HETATM 46 N N3 RFP . . . M 6 -108.544 -26.212 -6.134 1 195.08 ? N3 RFP 3001 C 1 HETATM 47 N N4 RFP . . . M 6 -106.195 -26.273 -4.594 1 195.81 ? N4 RFP 3001 C 1 HETATM 48 O O1 RFP . . . M 6 -115.113 -26.663 -7.859 1 135.71 ? O1 RFP 3001 C 1 HETATM 49 O O2 RFP . . . M 6 -116.241 -27.713 -9.62 1 124.31 ? O2 RFP 3001 C 1 HETATM 50 O O3 RFP . . . M 6 -113.561 -29.139 -13.547 1 158.72 ? O3 RFP 3001 C 1 HETATM 51 O O4 RFP . . . M 6 -110.512 -28.004 -12.674 1 164.77 ? O4 RFP 3001 C 1 HETATM 52 O O5 RFP . . . M 6 -111.713 -30.517 -13.435 1 180.76 ? O5 RFP 3001 C 1 HETATM 53 O O6 RFP . . . M 6 -112.866 -32.783 -10.112 1 136.85 ? O6 RFP 3001 C 1 HETATM 54 O O7 RFP . . . M 6 -110.708 -33.572 -8.002 1 100.83 ? O7 RFP 3001 C 1 HETATM 55 O O8 RFP . . . M 6 -112.04 -35.028 -6.946 1 144.36 ? O8 RFP 3001 C 1 HETATM 56 O O9 RFP . . . M 6 -113.075 -32.498 -5.389 1 93.32 ? O9 RFP 3001 C 1 HETATM 57 O O10 RFP . . . M 6 -113.703 -30.784 -4.057 1 91.02 ? O10 RFP 3001 C 1 HETATM 58 O O11 RFP . . . M 6 -114.955 -25.913 -5.864 1 138.24 ? O11 RFP 3001 C 1 HETATM 59 O O12 RFP . . . M 6 -110.174 -27.001 -10.307 1 161.57 ? O12 RFP 3001 C 1 # _model_server_stats.io_time_ms 117 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 472 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 59 #