data_5UAN # _model_server_result.job_id 3kdwuKoWWCE9URmd_Xbt6w _model_server_result.datetime_utc '2024-11-26 04:49:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uan # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":503}' # _entry.id 5UAN # _exptl.entry_id 5UAN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.435 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RETINOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.37 _cell.angle_gamma 90 _cell.entry_id 5UAN _cell.length_a 52.47 _cell.length_b 77.403 _cell.length_c 112.113 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UAN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 38 A CYS 135 1_555 G ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc2 A SG CYS 41 A CYS 138 1_555 G ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc3 A SG CYS 55 A CYS 152 1_555 G ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc4 A SG CYS 58 A CYS 155 1_555 G ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc5 A SG CYS 80 A CYS 177 1_555 H ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc6 A SG CYS 90 A CYS 187 1_555 H ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc7 B SG CYS 30 B CYS 81 1_555 J ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc8 B SG CYS 33 B CYS 84 1_555 J ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc9 B SG CYS 47 B CYS 98 1_555 J ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc10 B SG CYS 50 B CYS 101 1_555 J ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc11 B SG CYS 66 B CYS 117 1_555 K ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc12 B SG CYS 72 B CYS 123 1_555 K ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc13 B SG CYS 82 B CYS 133 1_555 K ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc14 B SG CYS 85 B CYS 136 1_555 K ZN ZN . B ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? hydrog WATSON-CRICK hydrog1 E N3 DC 1 E DC 1 1_555 F N1 DG 17 F DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 E N4 DC 1 E DC 1 1_555 F O6 DG 17 F DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 E O2 DC 1 E DC 1 1_555 F N2 DG 17 F DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 E N3 DT 2 E DT 2 1_555 F N1 DA 16 F DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 E O4 DT 2 E DT 2 1_555 F N6 DA 16 F DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 E N1 DA 3 E DA 3 1_555 F N3 DT 15 F DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 E N6 DA 3 E DA 3 1_555 F O4 DT 15 F DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 E N1 DG 4 E DG 4 1_555 F N3 DC 14 F DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 E N2 DG 4 E DG 4 1_555 F O2 DC 14 F DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 E O6 DG 4 E DG 4 1_555 F N4 DC 14 F DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 E N1 DG 5 E DG 5 1_555 F N3 DC 13 F DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 E N2 DG 5 E DG 5 1_555 F O2 DC 13 F DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 E O6 DG 5 E DG 5 1_555 F N4 DC 13 F DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 E N3 DT 6 E DT 6 1_555 F N1 DA 12 F DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 E O4 DT 6 E DT 6 1_555 F N6 DA 12 F DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 E N3 DC 7 E DC 7 1_555 F N1 DG 11 F DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 E N4 DC 7 E DC 7 1_555 F O6 DG 11 F DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 E O2 DC 7 E DC 7 1_555 F N2 DG 11 F DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 E N1 DA 8 E DA 8 1_555 F N3 DT 10 F DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 E N6 DA 8 E DA 8 1_555 F O4 DT 10 F DT 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 E N1 DA 9 E DA 9 1_555 F N3 DT 9 F DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 E N6 DA 9 E DA 9 1_555 F O4 DT 9 F DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 E N1 DA 10 E DA 10 1_555 F N3 DT 8 F DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 E N6 DA 10 E DA 10 1_555 F O4 DT 8 F DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 E N1 DG 11 E DG 11 1_555 F N3 DC 7 F DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 E N2 DG 11 E DG 11 1_555 F O2 DC 7 F DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 E O6 DG 11 E DG 11 1_555 F N4 DC 7 F DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 E N1 DG 12 E DG 12 1_555 F N3 DC 6 F DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 E N2 DG 12 E DG 12 1_555 F O2 DC 6 F DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 E O6 DG 12 E DG 12 1_555 F N4 DC 6 F DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 E N3 DT 13 E DT 13 1_555 F N1 DA 5 F DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 E O4 DT 13 E DT 13 1_555 F N6 DA 5 F DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 E N3 DC 14 E DC 14 1_555 F N1 DG 4 F DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 E N4 DC 14 E DC 14 1_555 F O6 DG 4 F DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 E O2 DC 14 E DC 14 1_555 F N2 DG 4 F DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 E N1 DA 15 E DA 15 1_555 F N3 DT 3 F DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 E N6 DA 15 E DA 15 1_555 F O4 DT 3 F DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C20 H28 O2' _chem_comp.formula_weight 300.435 _chem_comp.id REA _chem_comp.mon_nstd_flag . _chem_comp.name 'RETINOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 REA sing 474 n n C1 C6 REA sing 475 n n C1 C16 REA sing 476 n n C1 C17 REA sing 477 n n C2 C3 REA sing 478 n n C2 H21 REA sing 479 n n C2 H22 REA sing 480 n n C3 C4 REA sing 481 n n C3 H31 REA sing 482 n n C3 H32 REA sing 483 n n C4 C5 REA sing 484 n n C4 H41 REA sing 485 n n C4 H42 REA sing 486 n n C5 C6 REA doub 487 n n C5 C18 REA sing 488 n n C6 C7 REA sing 489 n n C7 C8 REA doub 490 e n C7 H7 REA sing 491 n n C8 C9 REA sing 492 n n C8 H8 REA sing 493 n n C9 C10 REA doub 494 e n C9 C19 REA sing 495 n n C10 C11 REA sing 496 n n C10 H10 REA sing 497 n n C11 C12 REA doub 498 e n C11 H11 REA sing 499 n n C12 C13 REA sing 500 n n C12 H12 REA sing 501 n n C13 C14 REA doub 502 e n C13 C20 REA sing 503 n n C14 C15 REA sing 504 n n C14 H14 REA sing 505 n n C15 O1 REA doub 506 n n C15 O2 REA sing 507 n n C16 H161 REA sing 508 n n C16 H162 REA sing 509 n n C16 H163 REA sing 510 n n C17 H171 REA sing 511 n n C17 H172 REA sing 512 n n C17 H173 REA sing 513 n n C18 H181 REA sing 514 n n C18 H182 REA sing 515 n n C18 H183 REA sing 516 n n C19 H191 REA sing 517 n n C19 H192 REA sing 518 n n C19 H193 REA sing 519 n n C20 H201 REA sing 520 n n C20 H202 REA sing 521 n n C20 H203 REA sing 522 n n O2 HO2 REA sing 523 n n # _atom_sites.entry_id 5UAN _atom_sites.fract_transf_matrix[1][1] 0.019059 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000123 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012919 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00892 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 6 ZN A 1 501 501 ZN ZN . H 6 ZN A 1 502 502 ZN ZN . I 7 9CR A 1 503 601 9CR 9CR . J 6 ZN B 1 501 501 ZN ZN . K 6 ZN B 1 502 502 ZN ZN . L 8 REA B 1 503 601 REA REA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 REA . . . L 8 -7.913 8.758 -56.133 1 35.02 ? C1 REA 503 B 1 HETATM 2 C C2 REA . . . L 8 -7.121 8.055 -57.238 1 42.76 ? C2 REA 503 B 1 HETATM 3 C C3 REA . . . L 8 -7.286 8.738 -58.578 1 48.32 ? C3 REA 503 B 1 HETATM 4 C C4 REA . . . L 8 -6.794 10.172 -58.504 1 46.89 ? C4 REA 503 B 1 HETATM 5 C C5 REA . . . L 8 -7.179 10.884 -57.232 1 43.33 ? C5 REA 503 B 1 HETATM 6 C C6 REA . . . L 8 -7.838 10.276 -56.232 1 35.77 ? C6 REA 503 B 1 HETATM 7 C C7 REA . . . L 8 -8.463 10.931 -55.069 1 31.35 ? C7 REA 503 B 1 HETATM 8 C C8 REA . . . L 8 -9.06 12.127 -55.03 1 31.19 ? C8 REA 503 B 1 HETATM 9 C C9 REA . . . L 8 -9.644 12.663 -53.804 1 28.68 ? C9 REA 503 B 1 HETATM 10 C C10 REA . . . L 8 -10.135 13.923 -53.858 1 30.45 ? C10 REA 503 B 1 HETATM 11 C C11 REA . . . L 8 -10.112 14.744 -55.021 1 30.25 ? C11 REA 503 B 1 HETATM 12 C C12 REA . . . L 8 -10.553 16.011 -54.869 1 34.58 ? C12 REA 503 B 1 HETATM 13 C C13 REA . . . L 8 -10.603 16.99 -55.935 1 39.31 ? C13 REA 503 B 1 HETATM 14 C C14 REA . . . L 8 -11.143 18.145 -55.661 1 48.64 ? C14 REA 503 B 1 HETATM 15 C C15 REA . . . L 8 -11.315 19.333 -56.587 1 54.97 ? C15 REA 503 B 1 HETATM 16 C C16 REA . . . L 8 -7.341 8.222 -54.809 1 31.87 ? C16 REA 503 B 1 HETATM 17 C C17 REA . . . L 8 -9.387 8.332 -56.232 1 35.72 ? C17 REA 503 B 1 HETATM 18 C C18 REA . . . L 8 -6.292 12.091 -57.123 1 47.03 ? C18 REA 503 B 1 HETATM 19 C C19 REA . . . L 8 -9.686 11.848 -52.581 1 28.26 ? C19 REA 503 B 1 HETATM 20 C C20 REA . . . L 8 -10.025 16.567 -57.243 1 36.35 ? C20 REA 503 B 1 HETATM 21 O O1 REA . . . L 8 -10.868 20.432 -56.211 1 56.72 ? O1 REA 503 B 1 HETATM 22 O O2 REA . . . L 8 -11.91 19.09 -57.666 1 55.91 ? O2 REA 503 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #