data_5UBG # _model_server_result.job_id i6guxaEnkLD5jWTSE9v7QQ _model_server_result.datetime_utc '2024-11-08 22:41:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ubg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 5UBG # _exptl.entry_id 5UBG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UBG _cell.length_a 67.458 _cell.length_b 80.46 _cell.length_c 92.728 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UBG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 34 A HIS 33 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc2 A NE2 HIS 36 A HIS 35 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc3 A OD1 ASP 56 A ASP 55 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc4 A OD2 ASP 57 A ASP 56 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc5 C ZN ZN . A ZN 301 3_554 B OE1 GLU 79 B GLU 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc6 C ZN ZN . A ZN 301 3_554 B OE2 GLU 79 B GLU 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc7 C ZN ZN . A ZN 301 3_554 B OE1 GLU 82 B GLU 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc8 D O3G PRT . A PRT 302 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc9 D O2B PRT . A PRT 302 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc10 E ZN ZN . A ZN 303 1_555 K O HOH . A HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc11 E ZN ZN . A ZN 303 1_555 K O HOH . A HOH 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc12 B NE2 HIS 34 B HIS 33 1_555 F ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc13 B NE2 HIS 36 B HIS 35 1_555 F ZN ZN . B ZN 301 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc14 B NE2 HIS 36 B HIS 35 1_555 G ZN ZN . B ZN 302 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc15 B OD1 ASP 56 B ASP 55 1_555 I ZN ZN . B ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc16 B OD2 ASP 57 B ASP 56 1_555 I ZN ZN . B ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc17 B OD2 ASP 101 B ASP 100 1_555 G ZN ZN . B ZN 302 4_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc18 H O2G PRT . B PRT 303 1_555 I ZN ZN . B ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc19 H O2B PRT . B PRT 303 1_555 I ZN ZN . B ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc20 I ZN ZN . B ZN 304 1_555 L O HOH . B HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc21 I ZN ZN . B ZN 304 1_555 L O HOH . B HOH 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5UBG _atom_sites.fract_transf_matrix[1][1] 0.014824 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012429 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010784 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 1 ZN ZN . D 3 PRT A 1 302 1 PRT DRG . E 2 ZN A 1 303 1 ZN ZN . F 2 ZN B 1 301 2 ZN ZN . G 2 ZN B 1 302 3 ZN ZN . H 3 PRT B 1 303 2 PRT DRG . I 2 ZN B 1 304 1 ZN ZN . J 4 CL B 1 305 1 CL CL . K 5 HOH A 1 401 161 HOH HOH . K 5 HOH A 2 402 196 HOH HOH . K 5 HOH A 3 403 117 HOH HOH . K 5 HOH A 4 404 119 HOH HOH . K 5 HOH A 5 405 122 HOH HOH . K 5 HOH A 6 406 123 HOH HOH . K 5 HOH A 7 407 184 HOH HOH . K 5 HOH A 8 408 39 HOH HOH . K 5 HOH A 9 409 140 HOH HOH . K 5 HOH A 10 410 147 HOH HOH . K 5 HOH A 11 411 71 HOH HOH . K 5 HOH A 12 412 27 HOH HOH . K 5 HOH A 13 413 35 HOH HOH . K 5 HOH A 14 414 76 HOH HOH . K 5 HOH A 15 415 125 HOH HOH . K 5 HOH A 16 416 25 HOH HOH . K 5 HOH A 17 417 48 HOH HOH . K 5 HOH A 18 418 55 HOH HOH . K 5 HOH A 19 419 95 HOH HOH . K 5 HOH A 20 420 93 HOH HOH . K 5 HOH A 21 421 59 HOH HOH . K 5 HOH A 22 422 109 HOH HOH . K 5 HOH A 23 423 165 HOH HOH . K 5 HOH A 24 424 138 HOH HOH . K 5 HOH A 25 425 22 HOH HOH . K 5 HOH A 26 426 4 HOH HOH . K 5 HOH A 27 427 1 HOH HOH . K 5 HOH A 28 428 195 HOH HOH . K 5 HOH A 29 429 31 HOH HOH . K 5 HOH A 30 430 82 HOH HOH . K 5 HOH A 31 431 159 HOH HOH . K 5 HOH A 32 432 50 HOH HOH . K 5 HOH A 33 433 32 HOH HOH . K 5 HOH A 34 434 164 HOH HOH . K 5 HOH A 35 435 46 HOH HOH . K 5 HOH A 36 436 133 HOH HOH . K 5 HOH A 37 437 12 HOH HOH . K 5 HOH A 38 438 54 HOH HOH . K 5 HOH A 39 439 7 HOH HOH . K 5 HOH A 40 440 189 HOH HOH . K 5 HOH A 41 441 156 HOH HOH . K 5 HOH A 42 442 77 HOH HOH . K 5 HOH A 43 443 10 HOH HOH . K 5 HOH A 44 444 134 HOH HOH . K 5 HOH A 45 445 149 HOH HOH . K 5 HOH A 46 446 101 HOH HOH . K 5 HOH A 47 447 106 HOH HOH . K 5 HOH A 48 448 92 HOH HOH . K 5 HOH A 49 449 112 HOH HOH . K 5 HOH A 50 450 29 HOH HOH . K 5 HOH A 51 451 187 HOH HOH . K 5 HOH A 52 452 85 HOH HOH . K 5 HOH A 53 453 107 HOH HOH . K 5 HOH A 54 454 157 HOH HOH . K 5 HOH A 55 455 181 HOH HOH . K 5 HOH A 56 456 137 HOH HOH . K 5 HOH A 57 457 69 HOH HOH . K 5 HOH A 58 458 150 HOH HOH . K 5 HOH A 59 459 28 HOH HOH . K 5 HOH A 60 460 100 HOH HOH . K 5 HOH A 61 461 8 HOH HOH . K 5 HOH A 62 462 146 HOH HOH . K 5 HOH A 63 463 61 HOH HOH . K 5 HOH A 64 464 98 HOH HOH . K 5 HOH A 65 465 19 HOH HOH . K 5 HOH A 66 466 128 HOH HOH . K 5 HOH A 67 467 145 HOH HOH . K 5 HOH A 68 468 139 HOH HOH . K 5 HOH A 69 469 130 HOH HOH . K 5 HOH A 70 470 75 HOH HOH . K 5 HOH A 71 471 2 HOH HOH . K 5 HOH A 72 472 116 HOH HOH . K 5 HOH A 73 473 23 HOH HOH . K 5 HOH A 74 474 190 HOH HOH . K 5 HOH A 75 475 87 HOH HOH . K 5 HOH A 76 476 97 HOH HOH . K 5 HOH A 77 477 91 HOH HOH . K 5 HOH A 78 478 113 HOH HOH . K 5 HOH A 79 479 179 HOH HOH . K 5 HOH A 80 480 81 HOH HOH . K 5 HOH A 81 481 79 HOH HOH . K 5 HOH A 82 482 33 HOH HOH . K 5 HOH A 83 483 120 HOH HOH . K 5 HOH A 84 484 153 HOH HOH . K 5 HOH A 85 485 169 HOH HOH . K 5 HOH A 86 486 89 HOH HOH . K 5 HOH A 87 487 191 HOH HOH . K 5 HOH A 88 488 170 HOH HOH . K 5 HOH A 89 489 168 HOH HOH . K 5 HOH A 90 490 94 HOH HOH . K 5 HOH A 91 491 60 HOH HOH . K 5 HOH A 92 492 192 HOH HOH . K 5 HOH A 93 493 67 HOH HOH . K 5 HOH A 94 494 155 HOH HOH . K 5 HOH A 95 495 160 HOH HOH . K 5 HOH A 96 496 183 HOH HOH . K 5 HOH A 97 497 63 HOH HOH . K 5 HOH A 98 498 99 HOH HOH . K 5 HOH A 99 499 197 HOH HOH . K 5 HOH A 100 500 6 HOH HOH . K 5 HOH A 101 501 152 HOH HOH . K 5 HOH A 102 502 47 HOH HOH . L 5 HOH B 1 401 118 HOH HOH . L 5 HOH B 2 402 166 HOH HOH . L 5 HOH B 3 403 143 HOH HOH . L 5 HOH B 4 404 126 HOH HOH . L 5 HOH B 5 405 127 HOH HOH . L 5 HOH B 6 406 18 HOH HOH . L 5 HOH B 7 407 38 HOH HOH . L 5 HOH B 8 408 185 HOH HOH . L 5 HOH B 9 409 96 HOH HOH . L 5 HOH B 10 410 111 HOH HOH . L 5 HOH B 11 411 188 HOH HOH . L 5 HOH B 12 412 182 HOH HOH . L 5 HOH B 13 413 70 HOH HOH . L 5 HOH B 14 414 34 HOH HOH . L 5 HOH B 15 415 21 HOH HOH . L 5 HOH B 16 416 135 HOH HOH . L 5 HOH B 17 417 56 HOH HOH . L 5 HOH B 18 418 64 HOH HOH . L 5 HOH B 19 419 121 HOH HOH . L 5 HOH B 20 420 193 HOH HOH . L 5 HOH B 21 421 5 HOH HOH . L 5 HOH B 22 422 105 HOH HOH . L 5 HOH B 23 423 13 HOH HOH . L 5 HOH B 24 424 174 HOH HOH . L 5 HOH B 25 425 40 HOH HOH . L 5 HOH B 26 426 17 HOH HOH . L 5 HOH B 27 427 30 HOH HOH . L 5 HOH B 28 428 16 HOH HOH . L 5 HOH B 29 429 36 HOH HOH . L 5 HOH B 30 430 58 HOH HOH . L 5 HOH B 31 431 52 HOH HOH . L 5 HOH B 32 432 198 HOH HOH . L 5 HOH B 33 433 51 HOH HOH . L 5 HOH B 34 434 84 HOH HOH . L 5 HOH B 35 435 178 HOH HOH . L 5 HOH B 36 436 14 HOH HOH . L 5 HOH B 37 437 66 HOH HOH . L 5 HOH B 38 438 154 HOH HOH . L 5 HOH B 39 439 175 HOH HOH . L 5 HOH B 40 440 41 HOH HOH . L 5 HOH B 41 441 176 HOH HOH . L 5 HOH B 42 442 102 HOH HOH . L 5 HOH B 43 443 88 HOH HOH . L 5 HOH B 44 444 68 HOH HOH . L 5 HOH B 45 445 11 HOH HOH . L 5 HOH B 46 446 148 HOH HOH . L 5 HOH B 47 447 20 HOH HOH . L 5 HOH B 48 448 3 HOH HOH . L 5 HOH B 49 449 37 HOH HOH . L 5 HOH B 50 450 65 HOH HOH . L 5 HOH B 51 451 167 HOH HOH . L 5 HOH B 52 452 158 HOH HOH . L 5 HOH B 53 453 199 HOH HOH . L 5 HOH B 54 454 129 HOH HOH . L 5 HOH B 55 455 194 HOH HOH . L 5 HOH B 56 456 171 HOH HOH . L 5 HOH B 57 457 24 HOH HOH . L 5 HOH B 58 458 86 HOH HOH . L 5 HOH B 59 459 9 HOH HOH . L 5 HOH B 60 460 73 HOH HOH . L 5 HOH B 61 461 104 HOH HOH . L 5 HOH B 62 462 80 HOH HOH . L 5 HOH B 63 463 136 HOH HOH . L 5 HOH B 64 464 62 HOH HOH . L 5 HOH B 65 465 173 HOH HOH . L 5 HOH B 66 466 90 HOH HOH . L 5 HOH B 67 467 103 HOH HOH . L 5 HOH B 68 468 57 HOH HOH . L 5 HOH B 69 469 163 HOH HOH . L 5 HOH B 70 470 43 HOH HOH . L 5 HOH B 71 471 74 HOH HOH . L 5 HOH B 72 472 53 HOH HOH . L 5 HOH B 73 473 45 HOH HOH . L 5 HOH B 74 474 177 HOH HOH . L 5 HOH B 75 475 172 HOH HOH . L 5 HOH B 76 476 180 HOH HOH . L 5 HOH B 77 477 110 HOH HOH . L 5 HOH B 78 478 141 HOH HOH . L 5 HOH B 79 479 151 HOH HOH . L 5 HOH B 80 480 131 HOH HOH . L 5 HOH B 81 481 108 HOH HOH . L 5 HOH B 82 482 15 HOH HOH . L 5 HOH B 83 483 44 HOH HOH . L 5 HOH B 84 484 162 HOH HOH . L 5 HOH B 85 485 42 HOH HOH . L 5 HOH B 86 486 114 HOH HOH . L 5 HOH B 87 487 26 HOH HOH . L 5 HOH B 88 488 142 HOH HOH . L 5 HOH B 89 489 200 HOH HOH . L 5 HOH B 90 490 132 HOH HOH . L 5 HOH B 91 491 49 HOH HOH . L 5 HOH B 92 492 72 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 12.531 _atom_site.Cartn_y -18.945 _atom_site.Cartn_z -23.156 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.44 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #