data_5UBI # _model_server_result.job_id HVFHnVa6pb4DJm429p4eTQ _model_server_result.datetime_utc '2024-10-15 13:16:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ubi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":305}' # _entry.id 5UBI # _exptl.entry_id 5UBI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UBI _cell.length_a 66.003 _cell.length_b 79.69 _cell.length_c 91.119 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UBI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 34 A HIS 33 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc2 A ND1 HIS 34 A HIS 33 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc3 A NE2 HIS 36 A HIS 35 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc4 A NE2 HIS 36 A HIS 35 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc5 A OD1 ASP 56 A ASP 55 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc6 A OD2 ASP 57 A ASP 56 1_555 E ZN ZN . A ZN 303 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc7 C ZN ZN . A ZN 301 3_555 B OE2 GLU 79 B GLU 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc8 C ZN ZN . A ZN 301 3_555 B OE2 GLU 82 B GLU 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? metalc ? metalc9 D ZN ZN . A ZN 302 1_555 R O HOH . A HOH 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc10 D ZN ZN . A ZN 302 3_555 B OE1 GLU 79 B GLU 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc11 H O2A PRP . A PRP 306 1_555 I MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc12 H O1B PRP . A PRP 306 1_555 I MG MG . A MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.971 ? metalc ? metalc13 I MG MG . A MG 307 1_555 R O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc14 B NE2 HIS 34 B HIS 33 1_555 K ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc15 B NE2 HIS 36 B HIS 35 1_555 K ZN ZN . B ZN 301 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc16 B NE2 HIS 36 B HIS 35 1_555 M ZN ZN . B ZN 303 4_446 ? A ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc17 B OD1 ASP 56 B ASP 55 1_555 L ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc18 B OD2 ASP 57 B ASP 56 1_555 L ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc19 B OD2 ASP 101 B ASP 100 1_555 M ZN ZN . B ZN 303 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc20 L ZN ZN . B ZN 302 1_555 S O HOH . B HOH 496 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc21 O O1A PRP . B PRP 305 1_555 P MG MG . B MG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? metalc ? metalc22 O O3B PRP . B PRP 305 1_555 P MG MG . B MG 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc23 P MG MG . B MG 306 1_555 S O HOH . B HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 5UBI _atom_sites.fract_transf_matrix[1][1] 0.015151 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012549 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010975 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 301 1 ZN ZN . D 2 ZN A 1 302 2 ZN ZN . E 2 ZN A 1 303 5 ZN ZN . F 3 ACT A 1 304 1 ACT ACT . G 3 ACT A 1 305 3 ACT ACT . H 4 PRP A 1 306 1 PRP PRP . I 5 MG A 1 307 2 MG MG . J 6 EDO A 1 308 1 EDO EDO . K 2 ZN B 1 301 3 ZN ZN . L 2 ZN B 1 302 4 ZN ZN . M 2 ZN B 1 303 6 ZN ZN . N 3 ACT B 1 304 2 ACT ACT . O 4 PRP B 1 305 2 PRP PRP . P 5 MG B 1 306 1 MG MG . Q 6 EDO B 1 307 2 EDO EDO . R 7 HOH A 1 401 124 HOH HOH . R 7 HOH A 2 402 93 HOH HOH . R 7 HOH A 3 403 110 HOH HOH . R 7 HOH A 4 404 43 HOH HOH . R 7 HOH A 5 405 92 HOH HOH . R 7 HOH A 6 406 119 HOH HOH . R 7 HOH A 7 407 96 HOH HOH . R 7 HOH A 8 408 46 HOH HOH . R 7 HOH A 9 409 26 HOH HOH . R 7 HOH A 10 410 49 HOH HOH . R 7 HOH A 11 411 15 HOH HOH . R 7 HOH A 12 412 7 HOH HOH . R 7 HOH A 13 413 145 HOH HOH . R 7 HOH A 14 414 196 HOH HOH . R 7 HOH A 15 415 164 HOH HOH . R 7 HOH A 16 416 204 HOH HOH . R 7 HOH A 17 417 195 HOH HOH . R 7 HOH A 18 418 40 HOH HOH . R 7 HOH A 19 419 13 HOH HOH . R 7 HOH A 20 420 203 HOH HOH . R 7 HOH A 21 421 167 HOH HOH . R 7 HOH A 22 422 14 HOH HOH . R 7 HOH A 23 423 133 HOH HOH . R 7 HOH A 24 424 37 HOH HOH . R 7 HOH A 25 425 154 HOH HOH . R 7 HOH A 26 426 75 HOH HOH . R 7 HOH A 27 427 78 HOH HOH . R 7 HOH A 28 428 127 HOH HOH . R 7 HOH A 29 429 197 HOH HOH . R 7 HOH A 30 430 5 HOH HOH . R 7 HOH A 31 431 130 HOH HOH . R 7 HOH A 32 432 98 HOH HOH . R 7 HOH A 33 433 121 HOH HOH . R 7 HOH A 34 434 114 HOH HOH . R 7 HOH A 35 435 51 HOH HOH . R 7 HOH A 36 436 72 HOH HOH . R 7 HOH A 37 437 71 HOH HOH . R 7 HOH A 38 438 70 HOH HOH . R 7 HOH A 39 439 17 HOH HOH . R 7 HOH A 40 440 157 HOH HOH . R 7 HOH A 41 441 31 HOH HOH . R 7 HOH A 42 442 95 HOH HOH . R 7 HOH A 43 443 64 HOH HOH . R 7 HOH A 44 444 1 HOH HOH . R 7 HOH A 45 445 42 HOH HOH . R 7 HOH A 46 446 142 HOH HOH . R 7 HOH A 47 447 131 HOH HOH . R 7 HOH A 48 448 173 HOH HOH . R 7 HOH A 49 449 8 HOH HOH . R 7 HOH A 50 450 99 HOH HOH . R 7 HOH A 51 451 90 HOH HOH . R 7 HOH A 52 452 125 HOH HOH . R 7 HOH A 53 453 162 HOH HOH . R 7 HOH A 54 454 16 HOH HOH . R 7 HOH A 55 455 205 HOH HOH . R 7 HOH A 56 456 66 HOH HOH . R 7 HOH A 57 457 23 HOH HOH . R 7 HOH A 58 458 160 HOH HOH . R 7 HOH A 59 459 161 HOH HOH . R 7 HOH A 60 460 79 HOH HOH . R 7 HOH A 61 461 174 HOH HOH . R 7 HOH A 62 462 168 HOH HOH . R 7 HOH A 63 463 216 HOH HOH . R 7 HOH A 64 464 163 HOH HOH . R 7 HOH A 65 465 132 HOH HOH . R 7 HOH A 66 466 139 HOH HOH . R 7 HOH A 67 467 56 HOH HOH . R 7 HOH A 68 468 62 HOH HOH . R 7 HOH A 69 469 158 HOH HOH . R 7 HOH A 70 470 111 HOH HOH . R 7 HOH A 71 471 155 HOH HOH . R 7 HOH A 72 472 175 HOH HOH . R 7 HOH A 73 473 171 HOH HOH . R 7 HOH A 74 474 94 HOH HOH . R 7 HOH A 75 475 159 HOH HOH . R 7 HOH A 76 476 48 HOH HOH . R 7 HOH A 77 477 169 HOH HOH . R 7 HOH A 78 478 52 HOH HOH . R 7 HOH A 79 479 102 HOH HOH . R 7 HOH A 80 480 97 HOH HOH . R 7 HOH A 81 481 137 HOH HOH . R 7 HOH A 82 482 41 HOH HOH . R 7 HOH A 83 483 172 HOH HOH . R 7 HOH A 84 484 126 HOH HOH . R 7 HOH A 85 485 211 HOH HOH . R 7 HOH A 86 486 140 HOH HOH . R 7 HOH A 87 487 201 HOH HOH . R 7 HOH A 88 488 170 HOH HOH . S 7 HOH B 1 401 134 HOH HOH . S 7 HOH B 2 402 117 HOH HOH . S 7 HOH B 3 403 54 HOH HOH . S 7 HOH B 4 404 191 HOH HOH . S 7 HOH B 5 405 107 HOH HOH . S 7 HOH B 6 406 30 HOH HOH . S 7 HOH B 7 407 29 HOH HOH . S 7 HOH B 8 408 38 HOH HOH . S 7 HOH B 9 409 186 HOH HOH . S 7 HOH B 10 410 81 HOH HOH . S 7 HOH B 11 411 28 HOH HOH . S 7 HOH B 12 412 10 HOH HOH . S 7 HOH B 13 413 69 HOH HOH . S 7 HOH B 14 414 213 HOH HOH . S 7 HOH B 15 415 91 HOH HOH . S 7 HOH B 16 416 112 HOH HOH . S 7 HOH B 17 417 63 HOH HOH . S 7 HOH B 18 418 68 HOH HOH . S 7 HOH B 19 419 118 HOH HOH . S 7 HOH B 20 420 104 HOH HOH . S 7 HOH B 21 421 36 HOH HOH . S 7 HOH B 22 422 61 HOH HOH . S 7 HOH B 23 423 2 HOH HOH . S 7 HOH B 24 424 150 HOH HOH . S 7 HOH B 25 425 44 HOH HOH . S 7 HOH B 26 426 34 HOH HOH . S 7 HOH B 27 427 165 HOH HOH . S 7 HOH B 28 428 35 HOH HOH . S 7 HOH B 29 429 120 HOH HOH . S 7 HOH B 30 430 57 HOH HOH . S 7 HOH B 31 431 50 HOH HOH . S 7 HOH B 32 432 76 HOH HOH . S 7 HOH B 33 433 22 HOH HOH . S 7 HOH B 34 434 53 HOH HOH . S 7 HOH B 35 435 156 HOH HOH . S 7 HOH B 36 436 84 HOH HOH . S 7 HOH B 37 437 77 HOH HOH . S 7 HOH B 38 438 82 HOH HOH . S 7 HOH B 39 439 45 HOH HOH . S 7 HOH B 40 440 129 HOH HOH . S 7 HOH B 41 441 67 HOH HOH . S 7 HOH B 42 442 87 HOH HOH . S 7 HOH B 43 443 4 HOH HOH . S 7 HOH B 44 444 184 HOH HOH . S 7 HOH B 45 445 3 HOH HOH . S 7 HOH B 46 446 24 HOH HOH . S 7 HOH B 47 447 18 HOH HOH . S 7 HOH B 48 448 27 HOH HOH . S 7 HOH B 49 449 194 HOH HOH . S 7 HOH B 50 450 21 HOH HOH . S 7 HOH B 51 451 11 HOH HOH . S 7 HOH B 52 452 12 HOH HOH . S 7 HOH B 53 453 183 HOH HOH . S 7 HOH B 54 454 59 HOH HOH . S 7 HOH B 55 455 39 HOH HOH . S 7 HOH B 56 456 108 HOH HOH . S 7 HOH B 57 457 202 HOH HOH . S 7 HOH B 58 458 33 HOH HOH . S 7 HOH B 59 459 141 HOH HOH . S 7 HOH B 60 460 143 HOH HOH . S 7 HOH B 61 461 151 HOH HOH . S 7 HOH B 62 462 103 HOH HOH . S 7 HOH B 63 463 180 HOH HOH . S 7 HOH B 64 464 192 HOH HOH . S 7 HOH B 65 465 80 HOH HOH . S 7 HOH B 66 466 89 HOH HOH . S 7 HOH B 67 467 65 HOH HOH . S 7 HOH B 68 468 9 HOH HOH . S 7 HOH B 69 469 188 HOH HOH . S 7 HOH B 70 470 177 HOH HOH . S 7 HOH B 71 471 74 HOH HOH . S 7 HOH B 72 472 47 HOH HOH . S 7 HOH B 73 473 123 HOH HOH . S 7 HOH B 74 474 135 HOH HOH . S 7 HOH B 75 475 189 HOH HOH . S 7 HOH B 76 476 106 HOH HOH . S 7 HOH B 77 477 60 HOH HOH . S 7 HOH B 78 478 109 HOH HOH . S 7 HOH B 79 479 73 HOH HOH . S 7 HOH B 80 480 198 HOH HOH . S 7 HOH B 81 481 187 HOH HOH . S 7 HOH B 82 482 25 HOH HOH . S 7 HOH B 83 483 210 HOH HOH . S 7 HOH B 84 484 19 HOH HOH . S 7 HOH B 85 485 101 HOH HOH . S 7 HOH B 86 486 85 HOH HOH . S 7 HOH B 87 487 128 HOH HOH . S 7 HOH B 88 488 100 HOH HOH . S 7 HOH B 89 489 55 HOH HOH . S 7 HOH B 90 490 212 HOH HOH . S 7 HOH B 91 491 209 HOH HOH . S 7 HOH B 92 492 214 HOH HOH . S 7 HOH B 93 493 200 HOH HOH . S 7 HOH B 94 494 136 HOH HOH . S 7 HOH B 95 495 20 HOH HOH . S 7 HOH B 96 496 116 HOH HOH . S 7 HOH B 97 497 113 HOH HOH . S 7 HOH B 98 498 144 HOH HOH . S 7 HOH B 99 499 166 HOH HOH . S 7 HOH B 100 500 138 HOH HOH . S 7 HOH B 101 501 190 HOH HOH . S 7 HOH B 102 502 182 HOH HOH . S 7 HOH B 103 503 122 HOH HOH . S 7 HOH B 104 504 86 HOH HOH . S 7 HOH B 105 505 148 HOH HOH . S 7 HOH B 106 506 147 HOH HOH . S 7 HOH B 107 507 176 HOH HOH . S 7 HOH B 108 508 193 HOH HOH . S 7 HOH B 109 509 185 HOH HOH . S 7 HOH B 110 510 199 HOH HOH . S 7 HOH B 111 511 206 HOH HOH . S 7 HOH B 112 512 6 HOH HOH . S 7 HOH B 113 513 215 HOH HOH . S 7 HOH B 114 514 207 HOH HOH . S 7 HOH B 115 515 58 HOH HOH . S 7 HOH B 116 516 146 HOH HOH . S 7 HOH B 117 517 181 HOH HOH . S 7 HOH B 118 518 105 HOH HOH . S 7 HOH B 119 519 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . G 3 -20.796 -3.703 40.512 1 63.63 ? C ACT 305 A 1 HETATM 2 O O ACT . . . G 3 -20.853 -2.907 39.547 1 64.93 ? O ACT 305 A 1 HETATM 3 O OXT ACT . . . G 3 -21.788 -4.388 40.881 1 55.06 ? OXT ACT 305 A 1 HETATM 4 C CH3 ACT . . . G 3 -19.484 -3.826 41.235 1 60.68 ? CH3 ACT 305 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #