data_5UBO # _model_server_result.job_id DoXS24eB-sGXt3zA-PnzPw _model_server_result.datetime_utc '2024-11-14 18:20:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ubo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 5UBO # _exptl.entry_id 5UBO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UBO _cell.length_a 56.2 _cell.length_b 69.25 _cell.length_c 179.18 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UBO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 169 A GLU 167 1_555 F CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc2 C CA CA . A CA 401 1_555 D O1G ATP . A ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc3 C CA CA . A CA 401 1_555 D O1B ATP . A ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc4 C CA CA . A CA 401 1_555 H O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc5 C CA CA . A CA 401 1_555 H O HOH . A HOH 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc6 C CA CA . A CA 401 1_555 H O HOH . A HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc7 C CA CA . A CA 401 1_555 H O HOH . A HOH 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc8 C CA CA . A CA 401 1_555 H O HOH . A HOH 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc9 F CA CA . A CA 404 1_555 H O HOH . A HOH 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc10 F CA CA . A CA 404 1_555 B OD1 ASP 85 S ASP 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc11 F CA CA . A CA 404 1_555 B OD2 ASP 85 S ASP 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc12 F CA CA . A CA 404 1_555 B O GLY 90 S GLY 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc13 F CA CA . A CA 404 1_555 B O ALA 92 S ALA 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc14 F CA CA . A CA 404 1_555 I O HOH . S HOH 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc15 B O GLY 41 S GLY 41 1_555 G CA CA . S CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc16 B OD1 ASP 42 S ASP 42 1_555 G CA CA . S CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc17 B OE1 GLU 73 S GLU 73 1_555 G CA CA . S CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc18 B OE2 GLU 73 S GLU 73 1_555 G CA CA . S CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc19 B O VAL 121 S VAL 121 1_555 G CA CA . S CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc20 G CA CA . S CA 201 1_555 I O HOH . S HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc21 G CA CA . S CA 201 1_555 I O HOH . S HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5UBO _atom_sites.fract_transf_matrix[1][1] 0.017794 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005581 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 401 401 CA CA . D 4 ATP A 1 402 402 ATP ATP . E 5 MPD A 1 403 403 MPD MPD . F 3 CA A 1 404 201 CA CA . G 3 CA S 1 201 202 CA CA . H 6 HOH A 1 501 505 HOH HOH . H 6 HOH A 2 502 506 HOH HOH . H 6 HOH A 3 503 502 HOH HOH . H 6 HOH A 4 504 503 HOH HOH . H 6 HOH A 5 505 518 HOH HOH . H 6 HOH A 6 506 501 HOH HOH . H 6 HOH A 7 507 510 HOH HOH . H 6 HOH A 8 508 507 HOH HOH . H 6 HOH A 9 509 508 HOH HOH . H 6 HOH A 10 510 516 HOH HOH . H 6 HOH A 11 511 521 HOH HOH . H 6 HOH A 12 512 504 HOH HOH . H 6 HOH A 13 513 511 HOH HOH . H 6 HOH A 14 514 512 HOH HOH . H 6 HOH A 15 515 517 HOH HOH . H 6 HOH A 16 516 514 HOH HOH . H 6 HOH A 17 517 523 HOH HOH . H 6 HOH A 18 518 528 HOH HOH . H 6 HOH A 19 519 520 HOH HOH . H 6 HOH A 20 520 519 HOH HOH . H 6 HOH A 21 521 530 HOH HOH . H 6 HOH A 22 522 525 HOH HOH . H 6 HOH A 23 523 513 HOH HOH . H 6 HOH A 24 524 524 HOH HOH . H 6 HOH A 25 525 531 HOH HOH . H 6 HOH A 26 526 527 HOH HOH . H 6 HOH A 27 527 515 HOH HOH . H 6 HOH A 28 528 522 HOH HOH . H 6 HOH A 29 529 532 HOH HOH . H 6 HOH A 30 530 533 HOH HOH . H 6 HOH A 31 531 538 HOH HOH . H 6 HOH A 32 532 540 HOH HOH . H 6 HOH A 33 533 526 HOH HOH . H 6 HOH A 34 534 546 HOH HOH . H 6 HOH A 35 535 534 HOH HOH . H 6 HOH A 36 536 535 HOH HOH . H 6 HOH A 37 537 545 HOH HOH . H 6 HOH A 38 538 509 HOH HOH . H 6 HOH A 39 539 536 HOH HOH . H 6 HOH A 40 540 547 HOH HOH . H 6 HOH A 41 541 551 HOH HOH . H 6 HOH A 42 542 562 HOH HOH . H 6 HOH A 43 543 529 HOH HOH . H 6 HOH A 44 544 537 HOH HOH . H 6 HOH A 45 545 541 HOH HOH . H 6 HOH A 46 546 544 HOH HOH . H 6 HOH A 47 547 539 HOH HOH . H 6 HOH A 48 548 543 HOH HOH . H 6 HOH A 49 549 554 HOH HOH . H 6 HOH A 50 550 550 HOH HOH . H 6 HOH A 51 551 555 HOH HOH . H 6 HOH A 52 552 557 HOH HOH . H 6 HOH A 53 553 542 HOH HOH . H 6 HOH A 54 554 560 HOH HOH . H 6 HOH A 55 555 552 HOH HOH . H 6 HOH A 56 556 549 HOH HOH . H 6 HOH A 57 557 558 HOH HOH . H 6 HOH A 58 558 561 HOH HOH . H 6 HOH A 59 559 563 HOH HOH . H 6 HOH A 60 560 553 HOH HOH . H 6 HOH A 61 561 556 HOH HOH . H 6 HOH A 62 562 559 HOH HOH . H 6 HOH A 63 563 566 HOH HOH . H 6 HOH A 64 564 567 HOH HOH . H 6 HOH A 65 565 564 HOH HOH . H 6 HOH A 66 566 565 HOH HOH . H 6 HOH A 67 567 548 HOH HOH . H 6 HOH A 68 568 568 HOH HOH . H 6 HOH A 69 569 569 HOH HOH . H 6 HOH A 70 570 571 HOH HOH . H 6 HOH A 71 571 570 HOH HOH . I 6 HOH S 1 301 302 HOH HOH . I 6 HOH S 2 302 303 HOH HOH . I 6 HOH S 3 303 311 HOH HOH . I 6 HOH S 4 304 301 HOH HOH . I 6 HOH S 5 305 308 HOH HOH . I 6 HOH S 6 306 305 HOH HOH . I 6 HOH S 7 307 306 HOH HOH . I 6 HOH S 8 308 304 HOH HOH . I 6 HOH S 9 309 312 HOH HOH . I 6 HOH S 10 310 313 HOH HOH . I 6 HOH S 11 311 309 HOH HOH . I 6 HOH S 12 312 317 HOH HOH . I 6 HOH S 13 313 314 HOH HOH . I 6 HOH S 14 314 323 HOH HOH . I 6 HOH S 15 315 315 HOH HOH . I 6 HOH S 16 316 310 HOH HOH . I 6 HOH S 17 317 307 HOH HOH . I 6 HOH S 18 318 316 HOH HOH . I 6 HOH S 19 319 321 HOH HOH . I 6 HOH S 20 320 320 HOH HOH . I 6 HOH S 21 321 327 HOH HOH . I 6 HOH S 22 322 334 HOH HOH . I 6 HOH S 23 323 328 HOH HOH . I 6 HOH S 24 324 319 HOH HOH . I 6 HOH S 25 325 326 HOH HOH . I 6 HOH S 26 326 318 HOH HOH . I 6 HOH S 27 327 322 HOH HOH . I 6 HOH S 28 328 338 HOH HOH . I 6 HOH S 29 329 324 HOH HOH . I 6 HOH S 30 330 329 HOH HOH . I 6 HOH S 31 331 332 HOH HOH . I 6 HOH S 32 332 337 HOH HOH . I 6 HOH S 33 333 330 HOH HOH . I 6 HOH S 34 334 341 HOH HOH . I 6 HOH S 35 335 331 HOH HOH . I 6 HOH S 36 336 325 HOH HOH . I 6 HOH S 37 337 335 HOH HOH . I 6 HOH S 38 338 333 HOH HOH . I 6 HOH S 39 339 336 HOH HOH . I 6 HOH S 40 340 340 HOH HOH . I 6 HOH S 41 341 339 HOH HOH . I 6 HOH S 42 342 342 HOH HOH . I 6 HOH S 43 343 352 HOH HOH . I 6 HOH S 44 344 346 HOH HOH . I 6 HOH S 45 345 347 HOH HOH . I 6 HOH S 46 346 350 HOH HOH . I 6 HOH S 47 347 349 HOH HOH . I 6 HOH S 48 348 353 HOH HOH . I 6 HOH S 49 349 355 HOH HOH . I 6 HOH S 50 350 348 HOH HOH . I 6 HOH S 51 351 344 HOH HOH . I 6 HOH S 52 352 343 HOH HOH . I 6 HOH S 53 353 354 HOH HOH . I 6 HOH S 54 354 351 HOH HOH . I 6 HOH S 55 355 356 HOH HOH . I 6 HOH S 56 356 359 HOH HOH . I 6 HOH S 57 357 357 HOH HOH . I 6 HOH S 58 358 345 HOH HOH . I 6 HOH S 59 359 358 HOH HOH . I 6 HOH S 60 360 360 HOH HOH . I 6 HOH S 61 361 362 HOH HOH . I 6 HOH S 62 362 361 HOH HOH . I 6 HOH S 63 363 363 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 33.167 _atom_site.Cartn_y -9.76 _atom_site.Cartn_z 45.258 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 60.03 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 404 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #