data_5UBR # _model_server_result.job_id NuWOZyf8Hz243aIG5fc97w _model_server_result.datetime_utc '2025-03-12 20:09:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ubr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":4000}' # _entry.id 5UBR # _exptl.entry_id 5UBR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 486.569 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[4-(3-{4-amino-5-[1-(oxan-4-yl)-1H-pyrazol-5-yl]pyrrolo[2,1-f][1,2,4]triazin-7-yl}phenyl)piperazin-1-yl]ethan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5UBR _cell.length_a 58.645 _cell.length_b 134.805 _cell.length_c 142.342 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UBR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H30 N8 O2' _chem_comp.formula_weight 486.569 _chem_comp.id 85S _chem_comp.mon_nstd_flag . _chem_comp.name 1-[4-(3-{4-amino-5-[1-(oxan-4-yl)-1H-pyrazol-5-yl]pyrrolo[2,1-f][1,2,4]triazin-7-yl}phenyl)piperazin-1-yl]ethan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 N14 85S doub 1 n y C15 C16 85S sing 2 n y N14 N13 85S sing 3 n y C16 C11 85S doub 4 n y C22 C21 85S sing 5 n n C22 C17 85S sing 6 n n N13 C11 85S sing 7 n y N13 C17 85S sing 8 n n C11 C9 85S sing 9 n n C21 O20 85S sing 10 n n C17 C18 85S sing 11 n n O20 C19 85S sing 12 n n C9 C8 85S sing 13 n y C9 C5 85S doub 14 n y C8 C7 85S doub 15 n y C18 C19 85S sing 16 n n C23 C24 85S doub 17 n y C23 C12 85S sing 18 n y N10 C6 85S sing 19 n n C5 C6 85S sing 20 n y C5 N4 85S sing 21 n y C24 C25 85S sing 22 n y C7 C12 85S sing 23 n n C7 N4 85S sing 24 n y C6 N1 85S doub 25 n y C12 C27 85S doub 26 n y N4 N3 85S sing 27 n y C25 C26 85S doub 28 n y N1 C2 85S sing 29 n y N3 C2 85S doub 30 n y C27 C26 85S sing 31 n y C26 N28 85S sing 32 n n N28 C29 85S sing 33 n n N28 C33 85S sing 34 n n C29 C30 85S sing 35 n n C33 C32 85S sing 36 n n C30 N31 85S sing 37 n n C32 N31 85S sing 38 n n N31 C34 85S sing 39 n n C34 O36 85S doub 40 n n C34 C35 85S sing 41 n n C8 H1 85S sing 42 n n C15 H2 85S sing 43 n n C2 H3 85S sing 44 n n N10 H4 85S sing 45 n n N10 H5 85S sing 46 n n C16 H6 85S sing 47 n n C17 H7 85S sing 48 n n C18 H8 85S sing 49 n n C18 H9 85S sing 50 n n C19 H10 85S sing 51 n n C19 H11 85S sing 52 n n C21 H12 85S sing 53 n n C21 H13 85S sing 54 n n C22 H14 85S sing 55 n n C22 H15 85S sing 56 n n C23 H16 85S sing 57 n n C24 H17 85S sing 58 n n C25 H18 85S sing 59 n n C27 H19 85S sing 60 n n C29 H20 85S sing 61 n n C29 H21 85S sing 62 n n C30 H22 85S sing 63 n n C30 H23 85S sing 64 n n C32 H24 85S sing 65 n n C32 H25 85S sing 66 n n C33 H26 85S sing 67 n n C33 H27 85S sing 68 n n C35 H28 85S sing 69 n n C35 H29 85S sing 70 n n C35 H30 85S sing 71 n n # _atom_sites.entry_id 5UBR _atom_sites.fract_transf_matrix[1][1] 0.017052 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007418 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007025 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 85S A 1 4000 4000 85S XXX . C 3 HOH A 1 4101 141 HOH HOH . C 3 HOH A 2 4102 17 HOH HOH . C 3 HOH A 3 4103 145 HOH HOH . C 3 HOH A 4 4104 142 HOH HOH . C 3 HOH A 5 4105 4 HOH HOH . C 3 HOH A 6 4106 151 HOH HOH . C 3 HOH A 7 4107 61 HOH HOH . C 3 HOH A 8 4108 20 HOH HOH . C 3 HOH A 9 4109 144 HOH HOH . C 3 HOH A 10 4110 37 HOH HOH . C 3 HOH A 11 4111 57 HOH HOH . C 3 HOH A 12 4112 84 HOH HOH . C 3 HOH A 13 4113 34 HOH HOH . C 3 HOH A 14 4114 27 HOH HOH . C 3 HOH A 15 4115 89 HOH HOH . C 3 HOH A 16 4116 73 HOH HOH . C 3 HOH A 17 4117 62 HOH HOH . C 3 HOH A 18 4118 41 HOH HOH . C 3 HOH A 19 4119 1 HOH HOH . C 3 HOH A 20 4120 7 HOH HOH . C 3 HOH A 21 4121 8 HOH HOH . C 3 HOH A 22 4122 52 HOH HOH . C 3 HOH A 23 4123 23 HOH HOH . C 3 HOH A 24 4124 22 HOH HOH . C 3 HOH A 25 4125 47 HOH HOH . C 3 HOH A 26 4126 58 HOH HOH . C 3 HOH A 27 4127 53 HOH HOH . C 3 HOH A 28 4128 127 HOH HOH . C 3 HOH A 29 4129 38 HOH HOH . C 3 HOH A 30 4130 135 HOH HOH . C 3 HOH A 31 4131 55 HOH HOH . C 3 HOH A 32 4132 143 HOH HOH . C 3 HOH A 33 4133 44 HOH HOH . C 3 HOH A 34 4134 105 HOH HOH . C 3 HOH A 35 4135 45 HOH HOH . C 3 HOH A 36 4136 71 HOH HOH . C 3 HOH A 37 4137 5 HOH HOH . C 3 HOH A 38 4138 2 HOH HOH . C 3 HOH A 39 4139 72 HOH HOH . C 3 HOH A 40 4140 152 HOH HOH . C 3 HOH A 41 4141 134 HOH HOH . C 3 HOH A 42 4142 98 HOH HOH . C 3 HOH A 43 4143 138 HOH HOH . C 3 HOH A 44 4144 35 HOH HOH . C 3 HOH A 45 4145 67 HOH HOH . C 3 HOH A 46 4146 65 HOH HOH . C 3 HOH A 47 4147 15 HOH HOH . C 3 HOH A 48 4148 11 HOH HOH . C 3 HOH A 49 4149 24 HOH HOH . C 3 HOH A 50 4150 125 HOH HOH . C 3 HOH A 51 4151 131 HOH HOH . C 3 HOH A 52 4152 14 HOH HOH . C 3 HOH A 53 4153 94 HOH HOH . C 3 HOH A 54 4154 3 HOH HOH . C 3 HOH A 55 4155 104 HOH HOH . C 3 HOH A 56 4156 99 HOH HOH . C 3 HOH A 57 4157 26 HOH HOH . C 3 HOH A 58 4158 59 HOH HOH . C 3 HOH A 59 4159 119 HOH HOH . C 3 HOH A 60 4160 49 HOH HOH . C 3 HOH A 61 4161 88 HOH HOH . C 3 HOH A 62 4162 95 HOH HOH . C 3 HOH A 63 4163 36 HOH HOH . C 3 HOH A 64 4164 69 HOH HOH . C 3 HOH A 65 4165 78 HOH HOH . C 3 HOH A 66 4166 40 HOH HOH . C 3 HOH A 67 4167 12 HOH HOH . C 3 HOH A 68 4168 28 HOH HOH . C 3 HOH A 69 4169 83 HOH HOH . C 3 HOH A 70 4170 148 HOH HOH . C 3 HOH A 71 4171 13 HOH HOH . C 3 HOH A 72 4172 106 HOH HOH . C 3 HOH A 73 4173 115 HOH HOH . C 3 HOH A 74 4174 19 HOH HOH . C 3 HOH A 75 4175 75 HOH HOH . C 3 HOH A 76 4176 139 HOH HOH . C 3 HOH A 77 4177 9 HOH HOH . C 3 HOH A 78 4178 16 HOH HOH . C 3 HOH A 79 4179 32 HOH HOH . C 3 HOH A 80 4180 155 HOH HOH . C 3 HOH A 81 4181 10 HOH HOH . C 3 HOH A 82 4182 18 HOH HOH . C 3 HOH A 83 4183 116 HOH HOH . C 3 HOH A 84 4184 121 HOH HOH . C 3 HOH A 85 4185 64 HOH HOH . C 3 HOH A 86 4186 154 HOH HOH . C 3 HOH A 87 4187 39 HOH HOH . C 3 HOH A 88 4188 6 HOH HOH . C 3 HOH A 89 4189 31 HOH HOH . C 3 HOH A 90 4190 56 HOH HOH . C 3 HOH A 91 4191 85 HOH HOH . C 3 HOH A 92 4192 51 HOH HOH . C 3 HOH A 93 4193 42 HOH HOH . C 3 HOH A 94 4194 60 HOH HOH . C 3 HOH A 95 4195 70 HOH HOH . C 3 HOH A 96 4196 90 HOH HOH . C 3 HOH A 97 4197 136 HOH HOH . C 3 HOH A 98 4198 97 HOH HOH . C 3 HOH A 99 4199 107 HOH HOH . C 3 HOH A 100 4200 81 HOH HOH . C 3 HOH A 101 4201 25 HOH HOH . C 3 HOH A 102 4202 117 HOH HOH . C 3 HOH A 103 4203 68 HOH HOH . C 3 HOH A 104 4204 48 HOH HOH . C 3 HOH A 105 4205 114 HOH HOH . C 3 HOH A 106 4206 120 HOH HOH . C 3 HOH A 107 4207 96 HOH HOH . C 3 HOH A 108 4208 74 HOH HOH . C 3 HOH A 109 4209 110 HOH HOH . C 3 HOH A 110 4210 33 HOH HOH . C 3 HOH A 111 4211 129 HOH HOH . C 3 HOH A 112 4212 82 HOH HOH . C 3 HOH A 113 4213 101 HOH HOH . C 3 HOH A 114 4214 122 HOH HOH . C 3 HOH A 115 4215 118 HOH HOH . C 3 HOH A 116 4216 123 HOH HOH . C 3 HOH A 117 4217 30 HOH HOH . C 3 HOH A 118 4218 112 HOH HOH . C 3 HOH A 119 4219 54 HOH HOH . C 3 HOH A 120 4220 86 HOH HOH . C 3 HOH A 121 4221 147 HOH HOH . C 3 HOH A 122 4222 76 HOH HOH . C 3 HOH A 123 4223 46 HOH HOH . C 3 HOH A 124 4224 50 HOH HOH . C 3 HOH A 125 4225 140 HOH HOH . C 3 HOH A 126 4226 113 HOH HOH . C 3 HOH A 127 4227 100 HOH HOH . C 3 HOH A 128 4228 132 HOH HOH . C 3 HOH A 129 4229 63 HOH HOH . C 3 HOH A 130 4230 66 HOH HOH . C 3 HOH A 131 4231 124 HOH HOH . C 3 HOH A 132 4232 157 HOH HOH . C 3 HOH A 133 4233 77 HOH HOH . C 3 HOH A 134 4234 92 HOH HOH . C 3 HOH A 135 4235 43 HOH HOH . C 3 HOH A 136 4236 91 HOH HOH . C 3 HOH A 137 4237 102 HOH HOH . C 3 HOH A 138 4238 29 HOH HOH . C 3 HOH A 139 4239 87 HOH HOH . C 3 HOH A 140 4240 93 HOH HOH . C 3 HOH A 141 4241 108 HOH HOH . C 3 HOH A 142 4242 146 HOH HOH . C 3 HOH A 143 4243 21 HOH HOH . C 3 HOH A 144 4244 111 HOH HOH . C 3 HOH A 145 4245 109 HOH HOH . C 3 HOH A 146 4246 103 HOH HOH . C 3 HOH A 147 4247 133 HOH HOH . C 3 HOH A 148 4248 149 HOH HOH . C 3 HOH A 149 4249 137 HOH HOH . C 3 HOH A 150 4250 128 HOH HOH . C 3 HOH A 151 4251 156 HOH HOH . C 3 HOH A 152 4252 130 HOH HOH . C 3 HOH A 153 4253 79 HOH HOH . C 3 HOH A 154 4254 80 HOH HOH . C 3 HOH A 155 4255 158 HOH HOH . C 3 HOH A 156 4256 126 HOH HOH . C 3 HOH A 157 4257 153 HOH HOH . C 3 HOH A 158 4258 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 85S . . . B 2 -16.479 13.709 29.57 1 55.41 ? C5 85S 4000 A 1 HETATM 2 C C6 85S . . . B 2 -15.244 14.248 30.049 1 54 ? C6 85S 4000 A 1 HETATM 3 N N1 85S . . . B 2 -15.262 15.124 31.074 1 55 ? N1 85S 4000 A 1 HETATM 4 C C7 85S . . . B 2 -18.767 13.574 29.692 1 63.09 ? C7 85S 4000 A 1 HETATM 5 C C8 85S . . . B 2 -18.323 12.744 28.67 1 58.24 ? C8 85S 4000 A 1 HETATM 6 C C9 85S . . . B 2 -16.895 12.827 28.591 1 55.2 ? C9 85S 4000 A 1 HETATM 7 C C11 85S . . . B 2 -16.059 12.09 27.629 1 54.14 ? C11 85S 4000 A 1 HETATM 8 C C12 85S . . . B 2 -20.159 13.818 30.149 1 68.78 ? C12 85S 4000 A 1 HETATM 9 N N3 85S . . . B 2 -17.652 15.049 31.277 1 59.85 ? N3 85S 4000 A 1 HETATM 10 C C15 85S . . . B 2 -14.587 11.519 26.089 1 52.18 ? C15 85S 4000 A 1 HETATM 11 N N4 85S . . . B 2 -17.62 14.157 30.232 1 58.84 ? N4 85S 4000 A 1 HETATM 12 C C2 85S . . . B 2 -16.459 15.456 31.607 1 58.75 ? C2 85S 4000 A 1 HETATM 13 N N10 85S . . . B 2 -14.07 13.91 29.513 1 55.4 ? N10 85S 4000 A 1 HETATM 14 N N13 85S . . . B 2 -16.092 10.744 27.373 1 55.18 ? N13 85S 4000 A 1 HETATM 15 N N14 85S . . . B 2 -15.18 10.376 26.416 1 54.79 ? N14 85S 4000 A 1 HETATM 16 C C16 85S . . . B 2 -15.081 12.611 26.798 1 52.57 ? C16 85S 4000 A 1 HETATM 17 C C17 85S . . . B 2 -16.983 9.765 28.024 1 53.62 ? C17 85S 4000 A 1 HETATM 18 C C18 85S . . . B 2 -16.164 8.695 28.747 1 56.11 ? C18 85S 4000 A 1 HETATM 19 C C19 85S . . . B 2 -17.063 7.613 29.298 1 53.7 ? C19 85S 4000 A 1 HETATM 20 O O20 85S . . . B 2 -17.897 7.063 28.279 1 53.17 ? O20 85S 4000 A 1 HETATM 21 C C21 85S . . . B 2 -18.748 8.077 27.702 1 51.38 ? C21 85S 4000 A 1 HETATM 22 C C22 85S . . . B 2 -17.938 9.146 27.008 1 51.35 ? C22 85S 4000 A 1 HETATM 23 C C23 85S . . . B 2 -21.186 14.056 29.235 1 71.46 ? C23 85S 4000 A 1 HETATM 24 C C24 85S . . . B 2 -22.481 14.281 29.677 1 72.53 ? C24 85S 4000 A 1 HETATM 25 C C25 85S . . . B 2 -22.773 14.272 31.034 1 74.4 ? C25 85S 4000 A 1 HETATM 26 C C26 85S . . . B 2 -21.757 14.034 31.969 1 75.3 ? C26 85S 4000 A 1 HETATM 27 C C27 85S . . . B 2 -20.449 13.808 31.515 1 70.63 ? C27 85S 4000 A 1 HETATM 28 N N28 85S . . . B 2 -22.046 14.024 33.338 1 82.55 ? N28 85S 4000 A 1 HETATM 29 C C29 85S . . . B 2 -21.711 15.241 34.084 1 87.98 ? C29 85S 4000 A 1 HETATM 30 C C30 85S . . . B 2 -22.398 15.242 35.44 1 90.6 ? C30 85S 4000 A 1 HETATM 31 N N31 85S . . . B 2 -22.03 14.033 36.191 1 91.97 ? N31 85S 4000 A 1 HETATM 32 C C32 85S . . . B 2 -22.402 12.817 35.452 1 89.73 ? C32 85S 4000 A 1 HETATM 33 C C33 85S . . . B 2 -21.725 12.805 34.086 1 86.38 ? C33 85S 4000 A 1 HETATM 34 C C34 85S . . . B 2 -21.421 14.027 37.418 1 95.09 ? C34 85S 4000 A 1 HETATM 35 C C35 85S . . . B 2 -21.098 15.346 38.058 1 95.01 ? C35 85S 4000 A 1 HETATM 36 O O36 85S . . . B 2 -21.146 12.975 37.98 1 96.94 ? O36 85S 4000 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #