data_5UC3 # _model_server_result.job_id hdfvNiCledjOrSFVWPA5hQ _model_server_result.datetime_utc '2024-11-29 07:08:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5uc3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":801}' # _entry.id 5UC3 # _exptl.entry_id 5UC3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 429.594 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '11-(4-DIMETHYLAMINO-PHENYL)-17-HYDROXY-13-METHYL-17-PROP-1-YNYL-1,2,6,7,8,11,12,13,14,15,16,17-DODEC AHYDRO-CYCLOPENTA[A]PHENANTHREN-3-ONE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.84 _cell.angle_gamma 90 _cell.entry_id 5UC3 _cell.length_a 136.749 _cell.length_b 88.32 _cell.length_c 64.672 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5UC3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_757 -x+2,y,-z+2 -1 0 0 0 1 0 0 0 -1 227.482642 0 120.881997 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 M N N # _chem_comp.formula 'C29 H35 N O2' _chem_comp.formula_weight 429.594 _chem_comp.id 486 _chem_comp.mon_nstd_flag . _chem_comp.name '11-(4-DIMETHYLAMINO-PHENYL)-17-HYDROXY-13-METHYL-17-PROP-1-YNYL-1,2,6,7,8,11,12,13,14,15,16,17-DODEC AHYDRO-CYCLOPENTA[A]PHENANTHREN-3-ONE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RU-486;MIFEPRISTONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O30 C2 486 doub 1 n n C2 C1 486 sing 2 n n C2 C3 486 sing 3 n n C1 C6 486 sing 4 n n C1 HC1A 486 sing 5 n n C1 HC12 486 sing 6 n n C3 C4 486 doub 7 n n C3 HC3 486 sing 8 n n C4 C7 486 sing 9 n n C4 C5 486 sing 10 n n C7 C8 486 sing 11 n n C7 HC71 486 sing 12 n n C7 HC72 486 sing 13 n n C5 C6 486 sing 14 n n C5 C10 486 doub 15 n n C6 HC61 486 sing 16 n n C6 HC62 486 sing 17 n n C10 C14 486 sing 18 n n C10 C9 486 sing 19 n n C14 C18 486 sing 20 n n C14 C13 486 sing 21 n n C14 HC14 486 sing 22 n n C18 C22 486 doub 23 n y C18 C26 486 sing 24 n y C22 C23 486 sing 25 n y C22 HC22 486 sing 26 n n C23 C24 486 doub 27 n y C23 HC23 486 sing 28 n n C24 N27 486 sing 29 n n C24 C25 486 sing 30 n y N27 C29 486 sing 31 n n N27 C28 486 sing 32 n n C29 H291 486 sing 33 n n C29 H292 486 sing 34 n n C29 H293 486 sing 35 n n C28 H281 486 sing 36 n n C28 H282 486 sing 37 n n C28 H283 486 sing 38 n n C25 C26 486 doub 39 n y C25 HC25 486 sing 40 n n C26 HC26 486 sing 41 n n C13 C12 486 sing 42 n n C13 H131 486 sing 43 n n C13 H132 486 sing 44 n n C12 C19 486 sing 45 n n C12 C17 486 sing 46 n n C12 C11 486 sing 47 n n C19 H191 486 sing 48 n n C19 H192 486 sing 49 n n C19 H193 486 sing 50 n n C17 C31 486 sing 51 n n C17 O3 486 sing 52 n n C17 C16 486 sing 53 n n C31 C30 486 trip 54 n n C30 C32 486 sing 55 n n C32 H321 486 sing 56 n n C32 H322 486 sing 57 n n C32 H323 486 sing 58 n n O3 HO3 486 sing 59 n n C16 C15 486 sing 60 n n C16 H161 486 sing 61 n n C16 H162 486 sing 62 n n C15 C11 486 sing 63 n n C15 H151 486 sing 64 n n C15 H152 486 sing 65 n n C11 C9 486 sing 66 n n C11 HC11 486 sing 67 n n C9 C8 486 sing 68 n n C9 HC9 486 sing 69 n n C8 HC81 486 sing 70 n n C8 HC82 486 sing 71 n n # _atom_sites.entry_id 5UC3 _atom_sites.fract_transf_matrix[1][1] 0.007313 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002783 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011322 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 486 A 1 801 1 486 486 . D 3 MPD A 1 802 1 MPD MPD . E 3 MPD A 1 803 2 MPD MPD . F 4 EDO A 1 804 1 EDO EDO . G 4 EDO A 1 805 2 EDO EDO . H 4 EDO A 1 806 3 EDO EDO . I 4 EDO A 1 807 6 EDO EDO . J 4 EDO A 1 808 8 EDO EDO . K 4 EDO A 1 809 9 EDO EDO . L 5 EPE A 1 810 1 EPE EPE . M 2 486 B 1 801 2 486 486 . N 3 MPD B 1 802 3 MPD MPD . O 4 EDO B 1 803 4 EDO EDO . P 4 EDO B 1 804 5 EDO EDO . Q 4 EDO B 1 805 7 EDO EDO . R 6 HOH A 1 901 145 HOH HOH . R 6 HOH A 2 902 164 HOH HOH . R 6 HOH A 3 903 29 HOH HOH . R 6 HOH A 4 904 97 HOH HOH . R 6 HOH A 5 905 165 HOH HOH . R 6 HOH A 6 906 45 HOH HOH . R 6 HOH A 7 907 32 HOH HOH . R 6 HOH A 8 908 80 HOH HOH . R 6 HOH A 9 909 160 HOH HOH . R 6 HOH A 10 910 14 HOH HOH . R 6 HOH A 11 911 180 HOH HOH . R 6 HOH A 12 912 20 HOH HOH . R 6 HOH A 13 913 51 HOH HOH . R 6 HOH A 14 914 60 HOH HOH . R 6 HOH A 15 915 10 HOH HOH . R 6 HOH A 16 916 2 HOH HOH . R 6 HOH A 17 917 13 HOH HOH . R 6 HOH A 18 918 105 HOH HOH . R 6 HOH A 19 919 38 HOH HOH . R 6 HOH A 20 920 135 HOH HOH . R 6 HOH A 21 921 182 HOH HOH . R 6 HOH A 22 922 177 HOH HOH . R 6 HOH A 23 923 158 HOH HOH . R 6 HOH A 24 924 112 HOH HOH . R 6 HOH A 25 925 43 HOH HOH . R 6 HOH A 26 926 90 HOH HOH . R 6 HOH A 27 927 30 HOH HOH . R 6 HOH A 28 928 28 HOH HOH . R 6 HOH A 29 929 68 HOH HOH . R 6 HOH A 30 930 193 HOH HOH . R 6 HOH A 31 931 1 HOH HOH . R 6 HOH A 32 932 98 HOH HOH . R 6 HOH A 33 933 3 HOH HOH . R 6 HOH A 34 934 12 HOH HOH . R 6 HOH A 35 935 50 HOH HOH . R 6 HOH A 36 936 63 HOH HOH . R 6 HOH A 37 937 208 HOH HOH . R 6 HOH A 38 938 46 HOH HOH . R 6 HOH A 39 939 117 HOH HOH . R 6 HOH A 40 940 47 HOH HOH . R 6 HOH A 41 941 66 HOH HOH . R 6 HOH A 42 942 134 HOH HOH . R 6 HOH A 43 943 87 HOH HOH . R 6 HOH A 44 944 101 HOH HOH . R 6 HOH A 45 945 7 HOH HOH . R 6 HOH A 46 946 4 HOH HOH . R 6 HOH A 47 947 108 HOH HOH . R 6 HOH A 48 948 24 HOH HOH . R 6 HOH A 49 949 6 HOH HOH . R 6 HOH A 50 950 18 HOH HOH . R 6 HOH A 51 951 132 HOH HOH . R 6 HOH A 52 952 114 HOH HOH . R 6 HOH A 53 953 88 HOH HOH . R 6 HOH A 54 954 54 HOH HOH . R 6 HOH A 55 955 198 HOH HOH . R 6 HOH A 56 956 171 HOH HOH . R 6 HOH A 57 957 77 HOH HOH . R 6 HOH A 58 958 138 HOH HOH . R 6 HOH A 59 959 85 HOH HOH . R 6 HOH A 60 960 107 HOH HOH . R 6 HOH A 61 961 36 HOH HOH . R 6 HOH A 62 962 110 HOH HOH . R 6 HOH A 63 963 26 HOH HOH . R 6 HOH A 64 964 69 HOH HOH . R 6 HOH A 65 965 39 HOH HOH . R 6 HOH A 66 966 76 HOH HOH . R 6 HOH A 67 967 70 HOH HOH . R 6 HOH A 68 968 15 HOH HOH . R 6 HOH A 69 969 104 HOH HOH . R 6 HOH A 70 970 204 HOH HOH . R 6 HOH A 71 971 126 HOH HOH . R 6 HOH A 72 972 102 HOH HOH . R 6 HOH A 73 973 205 HOH HOH . R 6 HOH A 74 974 103 HOH HOH . R 6 HOH A 75 975 139 HOH HOH . R 6 HOH A 76 976 122 HOH HOH . R 6 HOH A 77 977 118 HOH HOH . R 6 HOH A 78 978 116 HOH HOH . R 6 HOH A 79 979 16 HOH HOH . R 6 HOH A 80 980 21 HOH HOH . R 6 HOH A 81 981 41 HOH HOH . R 6 HOH A 82 982 33 HOH HOH . R 6 HOH A 83 983 166 HOH HOH . R 6 HOH A 84 984 124 HOH HOH . R 6 HOH A 85 985 146 HOH HOH . R 6 HOH A 86 986 17 HOH HOH . R 6 HOH A 87 987 94 HOH HOH . R 6 HOH A 88 988 19 HOH HOH . R 6 HOH A 89 989 74 HOH HOH . R 6 HOH A 90 990 157 HOH HOH . R 6 HOH A 91 991 152 HOH HOH . R 6 HOH A 92 992 142 HOH HOH . R 6 HOH A 93 993 147 HOH HOH . R 6 HOH A 94 994 106 HOH HOH . R 6 HOH A 95 995 58 HOH HOH . R 6 HOH A 96 996 83 HOH HOH . R 6 HOH A 97 997 34 HOH HOH . R 6 HOH A 98 998 11 HOH HOH . R 6 HOH A 99 999 128 HOH HOH . R 6 HOH A 100 1000 79 HOH HOH . R 6 HOH A 101 1001 149 HOH HOH . R 6 HOH A 102 1002 154 HOH HOH . R 6 HOH A 103 1003 150 HOH HOH . R 6 HOH A 104 1004 176 HOH HOH . R 6 HOH A 105 1005 141 HOH HOH . R 6 HOH A 106 1006 151 HOH HOH . R 6 HOH A 107 1007 56 HOH HOH . R 6 HOH A 108 1008 53 HOH HOH . R 6 HOH A 109 1009 183 HOH HOH . R 6 HOH A 110 1010 209 HOH HOH . R 6 HOH A 111 1011 37 HOH HOH . R 6 HOH A 112 1012 181 HOH HOH . R 6 HOH A 113 1013 163 HOH HOH . R 6 HOH A 114 1014 178 HOH HOH . R 6 HOH A 115 1015 52 HOH HOH . R 6 HOH A 116 1016 133 HOH HOH . R 6 HOH A 117 1017 109 HOH HOH . R 6 HOH A 118 1018 96 HOH HOH . R 6 HOH A 119 1019 89 HOH HOH . R 6 HOH A 120 1020 95 HOH HOH . R 6 HOH A 121 1021 148 HOH HOH . R 6 HOH A 122 1022 197 HOH HOH . R 6 HOH A 123 1023 78 HOH HOH . R 6 HOH A 124 1024 175 HOH HOH . R 6 HOH A 125 1025 202 HOH HOH . R 6 HOH A 126 1026 113 HOH HOH . R 6 HOH A 127 1027 156 HOH HOH . R 6 HOH A 128 1028 195 HOH HOH . R 6 HOH A 129 1029 111 HOH HOH . R 6 HOH A 130 1030 137 HOH HOH . R 6 HOH A 131 1031 131 HOH HOH . R 6 HOH A 132 1032 174 HOH HOH . R 6 HOH A 133 1033 144 HOH HOH . R 6 HOH A 134 1034 64 HOH HOH . R 6 HOH A 135 1035 170 HOH HOH . R 6 HOH A 136 1036 44 HOH HOH . R 6 HOH A 137 1037 123 HOH HOH . R 6 HOH A 138 1038 100 HOH HOH . R 6 HOH A 139 1039 62 HOH HOH . R 6 HOH A 140 1040 188 HOH HOH . R 6 HOH A 141 1041 179 HOH HOH . S 6 HOH B 1 901 71 HOH HOH . S 6 HOH B 2 902 27 HOH HOH . S 6 HOH B 3 903 121 HOH HOH . S 6 HOH B 4 904 49 HOH HOH . S 6 HOH B 5 905 75 HOH HOH . S 6 HOH B 6 906 159 HOH HOH . S 6 HOH B 7 907 31 HOH HOH . S 6 HOH B 8 908 84 HOH HOH . S 6 HOH B 9 909 173 HOH HOH . S 6 HOH B 10 910 189 HOH HOH . S 6 HOH B 11 911 55 HOH HOH . S 6 HOH B 12 912 99 HOH HOH . S 6 HOH B 13 913 210 HOH HOH . S 6 HOH B 14 914 127 HOH HOH . S 6 HOH B 15 915 136 HOH HOH . S 6 HOH B 16 916 35 HOH HOH . S 6 HOH B 17 917 5 HOH HOH . S 6 HOH B 18 918 22 HOH HOH . S 6 HOH B 19 919 25 HOH HOH . S 6 HOH B 20 920 59 HOH HOH . S 6 HOH B 21 921 23 HOH HOH . S 6 HOH B 22 922 190 HOH HOH . S 6 HOH B 23 923 42 HOH HOH . S 6 HOH B 24 924 129 HOH HOH . S 6 HOH B 25 925 82 HOH HOH . S 6 HOH B 26 926 9 HOH HOH . S 6 HOH B 27 927 8 HOH HOH . S 6 HOH B 28 928 140 HOH HOH . S 6 HOH B 29 929 81 HOH HOH . S 6 HOH B 30 930 48 HOH HOH . S 6 HOH B 31 931 61 HOH HOH . S 6 HOH B 32 932 115 HOH HOH . S 6 HOH B 33 933 153 HOH HOH . S 6 HOH B 34 934 40 HOH HOH . S 6 HOH B 35 935 214 HOH HOH . S 6 HOH B 36 936 65 HOH HOH . S 6 HOH B 37 937 186 HOH HOH . S 6 HOH B 38 938 67 HOH HOH . S 6 HOH B 39 939 130 HOH HOH . S 6 HOH B 40 940 168 HOH HOH . S 6 HOH B 41 941 73 HOH HOH . S 6 HOH B 42 942 199 HOH HOH . S 6 HOH B 43 943 119 HOH HOH . S 6 HOH B 44 944 125 HOH HOH . S 6 HOH B 45 945 93 HOH HOH . S 6 HOH B 46 946 91 HOH HOH . S 6 HOH B 47 947 161 HOH HOH . S 6 HOH B 48 948 155 HOH HOH . S 6 HOH B 49 949 72 HOH HOH . S 6 HOH B 50 950 57 HOH HOH . S 6 HOH B 51 951 187 HOH HOH . S 6 HOH B 52 952 212 HOH HOH . S 6 HOH B 53 953 213 HOH HOH . S 6 HOH B 54 954 203 HOH HOH . S 6 HOH B 55 955 211 HOH HOH . S 6 HOH B 56 956 86 HOH HOH . S 6 HOH B 57 957 185 HOH HOH . S 6 HOH B 58 958 167 HOH HOH . S 6 HOH B 59 959 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O30 486 . . . M 2 126.364 43.766 59.215 1 49.02 ? O30 486 801 B 1 HETATM 2 C C2 486 . . . M 2 125.794 44.853 59.245 1 51.59 ? C2 486 801 B 1 HETATM 3 C C1 486 . . . M 2 124.406 45.053 58.66 1 39.38 ? C1 486 801 B 1 HETATM 4 C C3 486 . . . M 2 126.44 46.054 59.77 1 36.11 ? C3 486 801 B 1 HETATM 5 C C4 486 . . . M 2 125.991 47.318 59.589 1 39.61 ? C4 486 801 B 1 HETATM 6 C C7 486 . . . M 2 126.776 48.49 60.134 1 40.19 ? C7 486 801 B 1 HETATM 7 C C5 486 . . . M 2 124.777 47.609 58.821 1 37.24 ? C5 486 801 B 1 HETATM 8 C C6 486 . . . M 2 124.192 46.44 58.044 1 43.84 ? C6 486 801 B 1 HETATM 9 C C10 486 . . . M 2 124.262 48.856 58.767 1 45.32 ? C10 486 801 B 1 HETATM 10 C C14 486 . . . M 2 123.053 49.191 57.901 1 41.94 ? C14 486 801 B 1 HETATM 11 C C18 486 . . . M 2 121.752 49.325 58.714 1 43.04 ? C18 486 801 B 1 HETATM 12 C C22 486 . . . M 2 120.637 49.965 58.154 1 46.97 ? C22 486 801 B 1 HETATM 13 C C23 486 . . . M 2 119.442 50.114 58.85 1 55.17 ? C23 486 801 B 1 HETATM 14 C C24 486 . . . M 2 119.281 49.603 60.16 1 53.55 ? C24 486 801 B 1 HETATM 15 N N27 486 . . . M 2 118.087 49.754 60.855 1 50.41 ? N27 486 801 B 1 HETATM 16 C C29 486 . . . M 2 117.517 51.091 60.826 1 57.09 ? C29 486 801 B 1 HETATM 17 C C28 486 . . . M 2 117.803 48.967 62.045 1 47.98 ? C28 486 801 B 1 HETATM 18 C C25 486 . . . M 2 120.402 48.957 60.727 1 49.42 ? C25 486 801 B 1 HETATM 19 C C26 486 . . . M 2 121.59 48.824 60.01 1 43.68 ? C26 486 801 B 1 HETATM 20 C C13 486 . . . M 2 123.396 50.388 56.944 1 45.75 ? C13 486 801 B 1 HETATM 21 C C12 486 . . . M 2 124.139 51.567 57.602 1 47.96 ? C12 486 801 B 1 HETATM 22 C C19 486 . . . M 2 123.15 52.434 58.4 1 48.54 ? C19 486 801 B 1 HETATM 23 C C17 486 . . . M 2 124.936 52.551 56.66 1 48.15 ? C17 486 801 B 1 HETATM 24 C C31 486 . . . M 2 125.712 51.911 55.586 1 46.1 ? C31 486 801 B 1 HETATM 25 C C30 486 . . . M 2 126.388 51.42 54.71 1 48.97 ? C30 486 801 B 1 HETATM 26 C C32 486 . . . M 2 127.218 50.841 53.657 1 46.43 ? C32 486 801 B 1 HETATM 27 O O3 486 . . . M 2 124.028 53.499 56.077 1 48.29 ? O3 486 801 B 1 HETATM 28 C C16 486 . . . M 2 125.925 53.259 57.665 1 50.08 ? C16 486 801 B 1 HETATM 29 C C15 486 . . . M 2 126.06 52.321 58.9 1 52.46 ? C15 486 801 B 1 HETATM 30 C C11 486 . . . M 2 125.31 51.045 58.469 1 52.28 ? C11 486 801 B 1 HETATM 31 C C9 486 . . . M 2 124.843 50.042 59.529 1 49.62 ? C9 486 801 B 1 HETATM 32 C C8 486 . . . M 2 125.903 49.661 60.573 1 46.81 ? C8 486 801 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 27 _model_server_stats.element_count 32 #